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19 pages, 2175 KB  
Article
Pomegranate Germplasm Collections from Elche (Spain) and Bari (Italy): Genetic Resources Characterization for Emerging Mediterranean Challenges
by Ana Lozano-Soria, Agata Gadaleta, Ilaria Marcotuli, Giuseppe Ferrara, Andrea Mazzeo, Julián Bartual and Elena Zuriaga
Plants 2025, 14(21), 3239; https://doi.org/10.3390/plants14213239 - 22 Oct 2025
Viewed by 245
Abstract
Pomegranate (Punica granatum L.) is a strategic crop for Mediterranean agriculture due to its adaptability to arid environments—an increasingly important trait in the context of climate change—and its rising market demand driven by nutritional and medicinal properties. To support breeding and conservation [...] Read more.
Pomegranate (Punica granatum L.) is a strategic crop for Mediterranean agriculture due to its adaptability to arid environments—an increasingly important trait in the context of climate change—and its rising market demand driven by nutritional and medicinal properties. To support breeding and conservation efforts, this study evaluated the genetic diversity and phenotypic traits of two Mediterranean germplasm collections from Elche (Spain) and Bari (Italy). A total of 184 accessions were analyzed using SSR markers and evaluated for key pomological and phenological traits, including fruit weight, skin and aril color, seed hardness, aril weight, titratable acidity, soluble solids content, and harvest time. Genetic analyses revealed high levels of diversity within and between collections, with clear population structure influenced by geographic origin. Phenotypic evaluation revealed considerable variation in agronomic and quality traits, and several accessions with notably desirable characteristics were identified. For example, Ovadan and Molla Nepes displayed very high soluble solids content (>19 °Bx), Sanrà Nero, Sanrà Rosso, and Tajikistan Dark Red exhibited titratable acidity exceeding 40 g/L citric acid, and De Marco reached aril weights of up to 0.60 g. The integration of molecular and morphological data provided valuable insights into the distinctiveness and breeding potential of the studied genotypes. Misclassifications were identified, as well as phenotypic differences attributable to environmental influences. These findings highlight the importance of characterizing regional germplasm to preserve local adaptations and support development of new cultivars adapted to changing environmental conditions. This work reinforces the role of European pomegranate collections as reservoirs of genetic resources for sustainable cultivation and future breeding programs. Full article
(This article belongs to the Special Issue Characterization and Conservation of Vegetable Genetic Resources)
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24 pages, 10501 KB  
Article
Unveiling Dark Web Identity Patterns: A Network-Based Analysis of Identification Types and Communication Channels in Illicit Activities
by Luis de-Marcos, Adrián Domínguez-Díaz, Javier Junquera-Sánchez, Carlos Cilleruelo and José-Javier Martínez-Herráiz
Information 2025, 16(11), 924; https://doi.org/10.3390/info16110924 - 22 Oct 2025
Viewed by 188
Abstract
The Dark Web, a hidden segment of the internet, has become a hub for illicit activities, facilitated by various forms of digital identification (IDs) such as email addresses, Telegram accounts, and cryptocurrency wallets. This study conducts a comprehensive analysis of the Dark Web’s [...] Read more.
The Dark Web, a hidden segment of the internet, has become a hub for illicit activities, facilitated by various forms of digital identification (IDs) such as email addresses, Telegram accounts, and cryptocurrency wallets. This study conducts a comprehensive analysis of the Dark Web’s identification and communication patterns, focusing on the roles of different ID types and their associated activities. Using a dataset of Dark Web documents, we construct and analyze a bipartite network to model the relationships between IDs and web documents, employing graph–theoretical metrics such as degree centrality, closeness centrality, betweenness centrality, and k-core decomposition, while analyzing subnetworks formed by ID type. Our findings reveal that Telegram forms the backbone of the network, serving as the primary communication tool for hacking-related activities, particularly within Russian-speaking communities. In contrast, email plays a more decentralized role, facilitating finance–crypto and other activities but with a high level of fragmentation and English as the predominant language. XMR (Monero) wallets emerge as a key component in financial transactions, forming a cohesive subnetwork focused on cryptocurrency-related activities. The analysis also highlights the modular and hierarchical nature of the Dark Web, with distinct clusters for hacking, finance–crypto, and drugs–narcotics, often operating independently but with some cross-topic interactions. This study provides a foundation for understanding the Dark Web’s structure and dynamics, offering insights that can inform strategies for monitoring and mitigating its risks. Full article
(This article belongs to the Section Information Security and Privacy)
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23 pages, 572 KB  
Article
Zero-Shot Classification of Illicit Dark Web Content with Commercial LLMs: A Comparative Study on Accuracy, Human Consistency, and Inter-Model Agreement
by Víctor-Pablo Prado-Sánchez, Adrián Domínguez-Díaz, Luis De-Marcos and José-Javier Martínez-Herráiz
Electronics 2025, 14(20), 4101; https://doi.org/10.3390/electronics14204101 - 19 Oct 2025
Viewed by 506
Abstract
This study evaluates the zero-shot classification performance of eight commercial large language models (LLMs), GPT-4o, GPT-4o Mini, GPT-3.5 Turbo, Claude 3.5 Haiku, Gemini 2.0 Flash, DeepSeek Chat, DeepSeek Reasoner, and Grok, using the CoDA dataset (n = 10,000 Dark Web documents). Results [...] Read more.
This study evaluates the zero-shot classification performance of eight commercial large language models (LLMs), GPT-4o, GPT-4o Mini, GPT-3.5 Turbo, Claude 3.5 Haiku, Gemini 2.0 Flash, DeepSeek Chat, DeepSeek Reasoner, and Grok, using the CoDA dataset (n = 10,000 Dark Web documents). Results show strong macro-F1 scores across models, led by DeepSeek Chat (0.870), Grok (0.868), and Gemini 2.0 Flash (0.861). Alignment with human annotations was high, with Cohen’s Kappa above 0.840 for top models and Krippendorff’s Alpha reaching 0.871. Inter-model consistency was highest between Claude 3.5 Haiku and GPT-4o (κ = 0.911), followed by DeepSeek Chat and Grok (κ = 0.909), and Claude 3.5 Haiku with Gemini 2.0 Flash (κ = 0.907). These findings confirm that state-of-the-art LLMs can reliably classify illicit content under zero-shot conditions, though performance varies by model and category. Full article
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14 pages, 834 KB  
Article
Development of Fermented Cricket Paste and Its Characteristic Comparison with Traditional Fermented Shrimp Paste (terasi)
by Reggie Surya, Felicia Tedjakusuma, Kantiya Petsong, Aphinya Thinthasit and David Nugroho
Foods 2025, 14(20), 3562; https://doi.org/10.3390/foods14203562 - 19 Oct 2025
Viewed by 353
Abstract
The demand for sustainable protein has increased interest in edible insects, and fermentation can improve the sensory and nutritional profiles of novel foods. This study aimed to develop a fermented cricket paste using a method analogous to traditional shrimp paste and evaluate the [...] Read more.
The demand for sustainable protein has increased interest in edible insects, and fermentation can improve the sensory and nutritional profiles of novel foods. This study aimed to develop a fermented cricket paste using a method analogous to traditional shrimp paste and evaluate the physiochemical, nutritional, microbiological, and sensory properties. Both pastes were produced via a biphasic fermentation protocol and subsequently analyzed for their physicochemical, nutritional, microbiological, and sensory properties including consumer acceptance testing in a chili paste. The cricket paste showed a comparable protein content, but higher in carbohydrates and lower in fat. It also showed enhanced stability and safety, with a significantly lower level of histamine (2.37 ppm) compared with shrimp paste (50.51 ppm). While the microbial profiles were broadly similar, the cricket paste had a lower lactic acid bacteria community. Sensory analysis revealed distinct profiles, with the cricket paste characterized by a dark color, coarse texture, nutty/earthy aroma, bitter, and less umami. Despite these differences, consumer liking for chili pastes made with either product was statistically identical. Cricket paste is therefore a safe, stable, and nutritionally advantageous alternative that is highly acceptable to consumers when used as a culinary ingredient. Full article
(This article belongs to the Section Food Systems)
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20 pages, 3425 KB  
Article
Exploring ALZHIR Through Dark Tourism Lenses: Representations, Commemoration and Emotions
by Aigerim Assylkhanova, Gyula Nagy and Lajos Boros
Tour. Hosp. 2025, 6(4), 220; https://doi.org/10.3390/tourhosp6040220 - 18 Oct 2025
Viewed by 309
Abstract
Dark tourism sites serve as powerful spaces where history, memory, and emotion intersect, shaping both individual experiences and collective narratives. The aim of this paper is to investigate how dark tourism narratives are constructed around post-Soviet memory and gendered suffering. A mixed-methods approach [...] Read more.
Dark tourism sites serve as powerful spaces where history, memory, and emotion intersect, shaping both individual experiences and collective narratives. The aim of this paper is to investigate how dark tourism narratives are constructed around post-Soviet memory and gendered suffering. A mixed-methods approach was employed, including content analysis of media sources (2013–2023), semiotic analysis of brochures and promotional materials, and survey data with Likert and open-ended questions (n = 250) collected via QR codes in 2023. ALZHIR (Akmolinski Lager Zhen Izmennikov Rodiny) is predominantly portrayed as a symbol of Soviet repression and gendered trauma. Media visibility remains limited due to geographic isolation, while museum narratives emphasize resilience and national unity. ALZHIR functions both as a commemorative and political space, blending authentic storytelling with state narratives. This study contributes to the international dark tourism literature by highlighting the transformative role of emotion, the politicization of memory in post-Soviet states, and the underexplored dimension of gendered suffering. Full article
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19 pages, 18396 KB  
Article
Composition and Genesis of Dark Dolomite-Type Nephrite in the Kavokta Deposit, Middle Vitim Mountain Country, Russia
by Evgeniy V. Kislov, Irina Yu. Kotova, Viktor F. Posokhov, Artem V. Trofimov and Elena A. Khromova
Geosciences 2025, 15(10), 398; https://doi.org/10.3390/geosciences15100398 - 14 Oct 2025
Viewed by 197
Abstract
The Kavokta deposit in Russia contains gray and black dolomite-type nephrite, which is in high demand commercially. Although the fact that black nephrite has been found in several deposits, the reasons for its color are not well understood. The present study aims to [...] Read more.
The Kavokta deposit in Russia contains gray and black dolomite-type nephrite, which is in high demand commercially. Although the fact that black nephrite has been found in several deposits, the reasons for its color are not well understood. The present study aims to identify the localization and mineral composition of gray and black nephrite, and to determine the reasons for its dark coloration. The mineral composition of nephrite was studied using a scanning electron microscope with energy-dispersive microanalysis (SEM-EDX) and X-ray phase analysis. Also, the isotopic composition of carbon in graphite in nephrite and in carbonates associated with nephrite in the surrounding strata was determined. The gray–black color in most samples from the southeastern part of the Kavokta deposit (lodes 17 and 28 of the nephrite-bearing zone 4 of the Medvezhy section and lode 6-1 of the nephrite-bearing zone 6 of the Levoberezhny section) is due to the presence of graphite. Syngenetic graphite formed both by the organic matter buried in dolomites and by the decomposition of carbon dioxide that is released during decarbonation under the influence of deep-seated hydrogen. The color of nephrite also depends on the iron content, changing from white to light green as the iron content increases. The gray color of tremolite–diopside nephrite is due to the development of chlorite aggregates that replace diopside and/or tremolite. The gray-green to black color of the nephrite in the northwestern part of the Kavokta deposit (lode 1 of the nephrite-bearing zone 1 of the Prozrachny section) is due to the high iron content in the tremolite–actinolite at the contact with the epidote–tremolite skarn formed after amphibolite. The identified patterns of black nephrite localization can be used in the process of geological exploration of similar deposits elsewhere in Russia and abroad. Full article
(This article belongs to the Section Geochemistry)
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25 pages, 6250 KB  
Article
Influence of Brewing Methods on the Bioactive and Mineral Composition of Coffee Beverages
by Monika Sijko-Szpańska, Iwona Mystkowska and Aleksandra Dmitrowicz
Molecules 2025, 30(20), 4080; https://doi.org/10.3390/molecules30204080 - 14 Oct 2025
Viewed by 411
Abstract
The chemical profile of coffee depends on numerous factors, the complexity of which makes it difficult to clearly assess their influence. The aim of this study was to comprehensively evaluate the impact of selected coffee brewing methods (Espresso, Simple Infusion, French Press, V60), [...] Read more.
The chemical profile of coffee depends on numerous factors, the complexity of which makes it difficult to clearly assess their influence. The aim of this study was to comprehensively evaluate the impact of selected coffee brewing methods (Espresso, Simple Infusion, French Press, V60), taking into account the coffee species (Arabica, Robusta, Blends), the degree of roasting (light, medium, dark) and the geographical origin (single-origin and multi-origin) on the chemical composition of the brew. Eighteen different types of coffee, which differ in the aforementioned characteristics, were analyzed. The caffeine content (using high-performance liquid chromatography), the total phenolic content (TPC; using a spectrophotometric method), and selected minerals (calcium, iron, potassium, magnesium, sodium, phosphorus, zinc; using Inductively Coupled Plasma–Optical Emission Spectrometry) were analyzed. The analysis showed that both the brewing method and the species had a significant influence on the chemical profile of the resulting brews, while the degree of roasting and the origin showed no significant influence. The Espresso method showed the highest caffeine, TPC, potassium, magnesium, and phosphorus content, the V60 method—calcium, iron, and sodium, and the French Press and Simple Infusion methods showed intermediate values. Robusta coffee contained more caffeine and TPC, Arabica contained more magnesium, and Blend showed medium values for both species. The results obtained may have practical implications for both consumers and the coffee industry, supporting informed decision-making and the refinement of brewing methods. Full article
(This article belongs to the Special Issue Extraction and Analysis of Natural Products in Food—3rd Edition)
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16 pages, 3163 KB  
Article
Chloroplast Hibernation-Promoting Factor PSRP1 Prevents Ribosome Degradation Under Darkness Independently of 100S Dimer Formation
by Kenta Tanaka, Yusuke Yoshizawa, Takashi Oda and Yasuhiko Sekine
Plants 2025, 14(20), 3155; https://doi.org/10.3390/plants14203155 - 13 Oct 2025
Viewed by 524
Abstract
Ribosome hibernation is a conserved translational stress response in bacteria, regulated by the hibernation-promoting factor (HPF). Plastid-specific ribosomal protein 1 (PSRP1) is the chloroplast ortholog of bacterial HPF. Although bacterial HPFs have been extensively characterized, both structurally and mechanistically, the physiological roles and [...] Read more.
Ribosome hibernation is a conserved translational stress response in bacteria, regulated by the hibernation-promoting factor (HPF). Plastid-specific ribosomal protein 1 (PSRP1) is the chloroplast ortholog of bacterial HPF. Although bacterial HPFs have been extensively characterized, both structurally and mechanistically, the physiological roles and mechanisms of PSRP1 in plant chloroplasts remain unclear. Here, we aimed to clarify the role of PSRP1 in chloroplast ribosome hibernation by examining its function under dark-stress conditions in the moss Physcomitrium patens. The PSRP1 knockout mutant exhibited moderate but statistically significant growth defects under both long- and short-day conditions compared to those of the wild-type plants. Moreover, the mutant displayed pronounced growth delay when co-cultured with wild-type plants, indicating a competitive disadvantage. Under dark conditions, wild-type plants exhibit increased PSRP1 protein accumulation, whereas the knockout mutant displayed reduction in chloroplast rRNA content. Notably, although PSRP1 is capable of inducing 100S dimers, we detected no chloroplast 100S dimers either in vivo or in vitro, suggesting a chloroplast-specific ribosome protection mechanism distinct from that of bacteria. These findings reveal PSRP1-mediated chloroplast ribosome protection and could provide new insights into plant stress tolerance. Full article
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18 pages, 2387 KB  
Article
Comparative Proteomic Analysis Provides Insight into the Effect of Monochromatic Light Wavelength on Metabolic Pathways Regulation of the Edible Mushroom Pleurotus ostreatus Grown in Submerged Fermentation
by Georgios Bakratsas, Martina Samiotaki, Renia Fotiadou, Haralambos Stamatis and Petros Katapodis
Horticulturae 2025, 11(10), 1234; https://doi.org/10.3390/horticulturae11101234 - 13 Oct 2025
Viewed by 529
Abstract
Light plays an essential role in regulating the growth, development, and metabolic activities of the edible mushroom Pleurotus ostreatus. In this research, the influence of white, blue, green, yellow, and red light, and darkness, on the global protein expression of P. ostreatus [...] Read more.
Light plays an essential role in regulating the growth, development, and metabolic activities of the edible mushroom Pleurotus ostreatus. In this research, the influence of white, blue, green, yellow, and red light, and darkness, on the global protein expression of P. ostreatus LGAM 1123 grown in submerged culture was explored. The growth of the fungus was not inhibited by light in any of the conditions tested compared with the dark. However, the mycelial protein content was reduced by 10% under blue and white light. Proteomic analysis revealed distinct proteomes for each light wavelength, with red and blue light presenting the most distinctive proteome profiles. (Data are available via ProteomeXchange with identifier PXD065402.) Blue light activates pathways such as the citrate cycle (TCA cycle), glycolysis/gluconeogenesis, and amino acid biosynthesis, while red light stimulates mRNA-related pathways. GC-MS analysis of the biomass revealed differences in the amino acids, sugars, and lipids produced. The distinct regulation of proteins and bioactive compounds under different light wavelengths suggests that specific wavelengths can direct the metabolism of P. ostreatus into biochemical pathways. These strategies could be beneficial for the food industry because particular nutrients can be increased during the fermentation of edible fungi without the need for genetic engineering of the strain. Full article
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26 pages, 5245 KB  
Article
Sedimentary Environment and Organic Matter Enrichment of the First Member in the Upper Triassic Xujiahe Formation, Southeastern Sichuan Basin
by Hao Huang, Zhongyun Chen, Tingshan Zhang, Xi Zhang and Jingxuan Zhang
Minerals 2025, 15(10), 1071; https://doi.org/10.3390/min15101071 - 13 Oct 2025
Viewed by 328
Abstract
The Xujiahe Formation (FM) is a significant source rock layer in the Sichuan Basin. In recent years, a growing number of scholars believe that the shale gas potential of the Xujiahe Formation is equally substantial, with the first member of the formation being [...] Read more.
The Xujiahe Formation (FM) is a significant source rock layer in the Sichuan Basin. In recent years, a growing number of scholars believe that the shale gas potential of the Xujiahe Formation is equally substantial, with the first member of the formation being the richest resource. The deposition of Member (Mbr) 1 of Xujiahe FM represents the first and most extensive transgression event within the entire Xujiahe Formation. This study investigates the sedimentary environment and organic matter (OM) enrichment mechanisms of the dark mud shales in the Mbr1 of Xujiahe FM on the southeastern margin of the Sichuan Basin, utilizing methods such as elemental geochemistry and organic geochemistry analyses. The results indicate that these dark mud shales possess a relatively high OM abundance, averaging 2.20% and reaching a maximum of 6.22%. The OM is primarily Type II2 to Type III. Furthermore, the paleoclimate during the Mbr1 period in the study area was warm and humid with lush aquatic vegetation. Intense weathering and ample precipitation transported large amounts of nutrients into the lacustrine/marine basin, promoting the growth and reproduction of algae and terrestrial plants. Correlation analysis between the Total Organic Carbon (TOC) content and various geochemical proxies in the Mbr1 mud shales suggests that OM enrichment in the study area was primarily controlled by the climate and sedimentation rate; substantial OM accumulation occurred only with abundant terrigenous OM input and a relatively high sedimentation rate. Redox conditions, primarily productivity, and terrigenous detrital input acted as secondary factors, collectively modulating OM enrichment. Event-driven transgressions also played an important role in creating conditions favorable for OM preservation. Synthesizing the influence of these multiple factors on OM enrichment, this study proposes two distinct composite models for OM enrichment, dominated by climate and sedimentation rate. Full article
(This article belongs to the Special Issue Element Enrichment and Gas Accumulation in Black Rock Series)
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20 pages, 4234 KB  
Article
Different Temperature Storage Conditions and Packaging Types Affects Colour Parameters, Amino Acid Composition, Microbial Contamination, and Key Bioactive Molecules of Moringa oleifera Lam. Powder
by Ashwell R. Ndhlala, Gladness T. Ngobeni, Rofhiwa Mulaudzi and Sogolo L. Lebelo
Molecules 2025, 30(20), 4048; https://doi.org/10.3390/molecules30204048 - 11 Oct 2025
Viewed by 331
Abstract
Moringa oleifera, renowned for its medicinal potency, was investigated to discern the impact of varying storage temperatures (4 °C, 25 °C, 40 °C) and light conditions (dark and light) on the quality attributes of its leaf powder during a 12-month storage period. [...] Read more.
Moringa oleifera, renowned for its medicinal potency, was investigated to discern the impact of varying storage temperatures (4 °C, 25 °C, 40 °C) and light conditions (dark and light) on the quality attributes of its leaf powder during a 12-month storage period. The study encompassed comprehensive analyses of phytochemical levels, nutritional properties, microbial contamination, and colour changes in response to these diverse storage environments. The lightness L* colour value changed significantly (40 to 60) from baseline tests when stored at 40 °C in transparent packaging. Results highlighted distinct variations in phytochemical composition and nutritional content based on the interplay between temperature and light conditions. Lower temperatures, particularly 4 °C, in both dark and light environments, demonstrated superior preservation of bioactive compounds, with mean values for quercetin-3-rutinoside of 3.34 µg/g and 3.19 µg/g, respectively; both are significantly higher compared to other treatments (p < 0.05). This trend was also observed for rutin, chlorogenic acid, and quercetin. Conversely, higher temperatures (25 °C, 40 °C) coupled with light exposure hastened degradation, notably impacting phytochemical stability. Microbial proliferation was evident in elevated temperatures, indicating potential safety risks. Further observations unveiled significant colour changes within the leaf powder, notably influenced by storage temperatures and light exposure. Lower temperatures exhibited diminished colour alterations compared to higher temperatures, underscoring their impact on product quality. This study underscores the critical role of controlled storage conditions, especially cooler temperatures and reduced light exposure, in maintaining the potency and quality of M. oleifera leaf powder. Recommendations advocate for stringent temperature control (preferably 4 °C) and light shielding during storage to uphold phytochemical stability and mitigate microbial proliferation. While this study provides valuable insights into temperature-mediated alterations, future research avenues should delve deeper into elucidating the underlying mechanisms of colour changes and long-term temperature effects on phytochemical and nutritional integrity. Full article
(This article belongs to the Special Issue Bioactive Compounds from Foods for Health Benefits)
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19 pages, 2825 KB  
Article
The Impact of Information Layout and Auxiliary Instruction Display Mode on the Usability of Virtual Fitting Interaction Interfaces
by Xingmin Lin and Peiling Pan
Information 2025, 16(10), 862; https://doi.org/10.3390/info16100862 - 4 Oct 2025
Viewed by 402
Abstract
With the widespread adoption of virtual fitting technology in e-commerce and fashion, optimizing user experience through interface design has become increasingly critical. However, research on the usability of virtual fitting interaction interfaces remains limited. Current interfaces frequently suffer from disorganized information layouts and [...] Read more.
With the widespread adoption of virtual fitting technology in e-commerce and fashion, optimizing user experience through interface design has become increasingly critical. However, research on the usability of virtual fitting interaction interfaces remains limited. Current interfaces frequently suffer from disorganized information layouts and ambiguous auxiliary instructions, reducing efficiency and immersion. This study systematically investigates the effects of information layout (matrix layout, list layout, horizontal layout) and auxiliary instruction display mode (positive polarity: dark content on light background; negative polarity: light content on dark background) on user task performance and subjective experience. A between-subjects experiment was conducted with 60 participants across six conditions. Participants performed a series of tasks, and data were collected on task completion time, subjective ratings, and Technology Acceptance Model responses. Analyses were conducted using two-way ANOVA. The main findings were as follows: (1) The matrix layout demonstrated higher efficiency in multi-target search and complex decision-making tasks, and also received higher subjective ratings for perceived ease of use. (2) The positive polarity display mode demonstrated better performance in single-information search and cognitively intensive tasks, coupled with higher subjective ratings for interface rationality and information clarity. (3) A significant interaction effect was identified between information layout and display mode. The matrix layout combined with positive polarity improved efficiency, whereas the list layout with negative polarity impaired task performance. The horizontal layout was also rated lower for operational fluency. These findings provide practical guidance for designing virtual fitting interfaces that enhance both performance and subjective user experience. Full article
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27 pages, 3267 KB  
Article
Regulatory Mechanisms of Tannins on the Decomposition Rate of Mixed Leaf Litter in Submerged Environments
by Lisha Li, Jiahao Tan, Gairen Yang, Yu Huang, Yusong Deng, Yuhan Huang, Mingxia Yang, Jizhao Cao and Huili Wang
Plants 2025, 14(19), 3064; https://doi.org/10.3390/plants14193064 - 3 Oct 2025
Viewed by 550
Abstract
Terrestrial cross-boundary inputs of leaf litter serve as a critical foundation for secondary productivity in freshwater ecosystems. The regulatory mechanisms of tannins in leaf litter on degradation rates under submerged conditions remain unclear. This study employed leaf litter from low-tannin plants Osmanthus fragrans [...] Read more.
Terrestrial cross-boundary inputs of leaf litter serve as a critical foundation for secondary productivity in freshwater ecosystems. The regulatory mechanisms of tannins in leaf litter on degradation rates under submerged conditions remain unclear. This study employed leaf litter from low-tannin plants Osmanthus fragrans (A) and Canna glauca (B) as decomposition substrates, with the high-tannin species Myriophyllum verticillatum (C) incorporated to adjust tannin levels. A 140-day hydroponic degradation experiment was conducted under controlled temperature and dark conditions, which included four mixed litter treatments with a gradient of tannin additions (AB as the control, 0 g; ABC1: 0.5 g; ABC2: 2.5 g; ABC3: 4.5 g) along with two single-species treatments (A and B). The following results were found: (1) Low tannin levels (ABC1) promoted degradation rates of A and B (increased by 1.33–12.70%), whereas high tannin (ABC3) inhibited decomposition (decreased by 6.21–6.82%). (2) Tannin–protein complexes reduce nitrogen bioavailability and inhibit nitrification, thereby disrupting the nitrogen cycle in aquatic systems. In ABC3, total nitrogen content in A and B litter increased by 17.69–26.46% compared to AB, with concurrent 59.29% elevation in water NH4+-N concentration. (3) High tannin induced dominance of oligotrophic stress-resistant bacterial communities (e.g., Treponema) through nutrient limitation and toxicity stress; however, their low metabolic efficiency reduced overall decomposition efficiency. Research reveals that the ecological benefits of plant secondary metabolites outweigh their nutritional quality attributes. Full article
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17 pages, 3716 KB  
Article
Direct Transcriptional Activation of LEHP2 and LEHP3 by LeMYB2 and LeMYB5 Underlies Postharvest Browning in Lentinus edodes
by Bing Deng, Yunzhi Li, Xuewen Yuan, Jingyu Liu, Cunkun Chen and Hongyan Zhang
Horticulturae 2025, 11(10), 1176; https://doi.org/10.3390/horticulturae11101176 - 2 Oct 2025
Viewed by 293
Abstract
Postharvest shiitake mushrooms (Lentinus edodes) often undergo browning under low-temperature, high-humidity storage conditions, which significantly reduces their commercial value and constrains industry development. However, the molecular mechanisms regulating this process remain unclear. In this study, we used ‘Nongxiang No. 1’ as [...] Read more.
Postharvest shiitake mushrooms (Lentinus edodes) often undergo browning under low-temperature, high-humidity storage conditions, which significantly reduces their commercial value and constrains industry development. However, the molecular mechanisms regulating this process remain unclear. In this study, we used ‘Nongxiang No. 1’ as the experimental material and observed that during storage, the L* value of caps and stipes decreased continuously, shifting from light brown to dark brown-black. Concurrently, the relative electrical conductivity increased by approximately 3.07-fold, and the membrane lipid peroxidation product malondialdehyde (MDA) content increased by approximately 7.9-fold. Superoxide dismutase (SOD) activity initially increased then declined, indicating that elevated membrane permeability accelerates senescence. Peroxidase (POD) activity exhibited a significant upward then downward trend and improved 75.83% at day 22 of postharvest storage, with LEHP1, LEHP2, and LEHP3 gene expression patterns closely aligning with these changes. Specifically, LEHP2 and LEHP3 expression was upregulated by 23.8-fold and 2.35-fold on day 22 than day 0. Cis-element analysis identified MYB binding sites in all three LEHP genes. Genome-wide screening combined with qRT-PCR revealed two MYB transcription factors, LeMYB2 and LeMYB5, whose expression synchronized with LEHP genes. Transient expression assays in tobacco leaves confirmed their nuclear localization, consistent with transcription factor characteristics. Electrophoretic Mobility Shift Assay (EMSA) and Dual-Luciferase Reporter Assay (DLR) experiments further demonstrated that LeMYB2 and LeMYB5 directly activate LEHP2 and LEHP3 promoters, highlighting their key regulatory roles in postharvest browning of shiitake mushrooms. Full article
(This article belongs to the Section Postharvest Biology, Quality, Safety, and Technology)
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12 pages, 4480 KB  
Article
Transcriptomic Insights into Anthocyanin Biosynthesis in Aronia melanocarpa Callus Under Different Light Conditions
by Mingjun Hou, Bingrui Wang, Chang An, Yulai Wu, Mohammad Gul Arabzai, Xiaopeng Fan, Changbing Liu and Zongshen Zhang
Int. J. Mol. Sci. 2025, 26(19), 9588; https://doi.org/10.3390/ijms26199588 - 1 Oct 2025
Viewed by 340
Abstract
Aronia melanocarpa is rich in anthocyanins, compounds with significant medicinal and industrial value, making it an attractive species for enhanced production. Compared with fruits or intact plants, callus tissue offers a uniform, controllable in vitro system that is particularly suitable for dissecting regulatory [...] Read more.
Aronia melanocarpa is rich in anthocyanins, compounds with significant medicinal and industrial value, making it an attractive species for enhanced production. Compared with fruits or intact plants, callus tissue offers a uniform, controllable in vitro system that is particularly suitable for dissecting regulatory mechanisms under defined environmental conditions. Although light quality is known to influence anthocyanin biosynthesis, its specific regulatory mechanisms in A. melanocarpa remain unclear. In this study, callus tissues were cultured under six light regimes: full-spectrum LED, blue:red (5:1), red:blue (5:1), red:blue:white (1:1:1), red:white (5:1), and pure blue light. Anthocyanin content was quantified using the pH differential method, and the results showed that the blue:red (5:1) treatment produced the highest accumulation, reaching 14.06 mg/100 g. Transcriptome sequencing was then performed to compare the gene expression profiles between calli cultured under blue:red (5:1) light and those maintained in darkness. A total of 10,547 differentially expressed genes (DEGs) were identified, including 6134 upregulated and 4413 downregulated genes. Functional enrichment analysis indicated that these DEGs were mainly involved in anthocyanin biosynthesis and transport. Importantly, key structural genes such as PAL, C4H, 4CL, CHS, ANS, UFGT, and GST were significantly upregulated under blue:red (5:1) light, as further validated by qRT-PCR. Overall, our findings demonstrate that a blue:red (5:1) light ratio enhances anthocyanin accumulation by promoting the expression of biosynthetic and transport-related genes. This study not only provides new transcriptomic insights into the light-mediated regulation of secondary metabolism in A. melanocarpa callus, but also establishes a foundation for optimizing in vitro culture systems for sustainable anthocyanin production. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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