Search Results (598)

Extracellular vesicles (EVs) mediate intercellular communication by delivering proteins and RNAs, with their molecular cargo often reflecting the biological context of their source. Perinatal tissues are promising sources of EV-related biomaterials with potential dermatologic applications. In this study, we compared EV-related molecular cargo from two umbilical cord-associated sources, umbilical cord mesenchymal stem cell (UCMSC)-derived EVs and cord blood plasma (CBP), to investigate whether these materials exhibit distinct functional effects on melanogenesis. UCMSC-derived EVs were isolated from conditioned culture medium and characterized using nanoparticle tracking analysis (NTA), cryo-electron microscopy (cryo-EM), and canonical EV marker detection, while cord blood samples were processed to obtain plasma following centrifugation and filtration, containing EVs together with soluble plasma components. Functional assays in the murine melanocyte cell line B16F10 demonstrated that UCMSC-derived EVs suppressed melanin production, whereas CBP treatment enhanced melanogenesis. Integrative omics analyses combining microRNAs (miRNAs) microarray profiling and proteomic characterization revealed distinct molecular signatures between UCMSC-derived EVs and CBP samples. Functional validation using miRNA mimic assays showed that selected miRNAs, including miR-6862-5p, miR-3622b-5p, miR-7847-3p, miR-6774-5p, and miR-4685-5p, reduced melanin production, whereas others, including miR-203a-3p, miR-126-3p, miR-139-5p, and miR-15b-5p, increased melanin levels. Pathway analysis using Ingenuity Pathway Analysis (IPA) (QIAGEN Inc.) associated these miRNA subsets with signaling pathways involved in melanogenesis. Together, these findings indicate that UCMSC-derived EVs and CBP exhibit opposite functional effects on melanogenesis and possess distinct miRNA and protein cargo profiles, providing potential molecular targets for modulating pigmentation and supporting the development of EV-related therapeutic strategies for pigmentation disorders. Full article

Renal organic anion transporters 1 (OAT1) and 3 (OAT3) mediate the excretion of endogenous metabolites and xenobiotics. Flavonoids interact significantly with these transporters, but the structural determinants—especially regarding in vivo phase II metabolism—remain unclear. This review integrates recent cryogenic electron microscopy (cryo-EM) structural biology and transporter kinetics to delineate the molecular basis of flavonoid–OAT interactions. We highlight phase II metabolites as key in vivo effectors. Structurally, OAT1 strictly favors compact, planar anionic scaffolds, whereas OAT3 accommodates bulkier, conjugated forms. Crucially, flavonoids exert a “double-edged” toxicological effect: high-affinity OAT inhibition risks herb–drug interactions, yet competitively limits the tubular uptake of nephrotoxins. Furthermore, disease states and post-translational regulation reshape these interactions. By bridging structural insights with biomarker-guided pharmacokinetics, we propose a mechanistic framework to improve the precise safety assessment of flavonoid-containing therapeutics. Full article

Members of Marseilleviridae, a family of icosahedral giant viruses, have been identified worldwide in all types of environments. The virion shows a characteristic internal membrane extrusion at the five-fold vertices of the capsid, but its structural details need to be elucidated. We now report the 4.4 Å cryo-electron microscopy structure of the melbournevirus capsid by using a block-based reconstruction approach. Results: An atomic model of the major capsid protein (MCP) shows a unique cup structure on the trimer that accommodates additional proteins. A polyalanine model of the Penton base protein shows internally extended N- and C-terminals, which indirectly connect to the internal membrane extrusion. The Marseilleviruses share the same orientational organization of the MCPs as previously reported for other giant viruses, but the unique minor capsid protein components named Scaffold may be alternatively utilized to control the dimensions of the capsid during assembly as the tape measure protein. Full article

Extracellular vesicles (EVs) derived from microbial sources, including beer yeast (Saccharomyces cerevisiae), have recently attracted increasing attention as bioactive nanostructures with potential biomedical and cosmetic applications. In this study, EVs were isolated from Saccharomyces cerevisiae (beer yeast) using an electrokinetic ion-binding filtration system, followed by tangential flow filtration (TFF)-based buffer exchange. Their physicochemical characteristics and hair follicle-related biological activities were systematically evaluated. Nanoparticle tracking analysis demonstrated a mean particle size within the typical EV range, and zeta potential analysis confirmed a negatively charged surface. Cryo-transmission electron microscopy further verified the presence of lipid bilayer-enclosed nanovesicles. Biological activity was assessed in human dermal papilla cells, keratinocytes, and dermal fibroblasts, which collectively represent key components of the hair follicle microenvironment. At non-cytotoxic concentrations, yeast-derived EVs enhanced dermal papilla cell proliferation and promoted keratinocyte migration. The EVs attenuated pro-inflammatory cytokine expression under stimulated conditions and upregulated collagen-related gene expression in dermal fibroblasts. In addition, measurable antioxidant activity was observed. Collectively, these findings indicate that S. cerevisiae-derived extracellular vesicles exhibit multifunctional bioactivity relevant to the regulation of hair follicle-associated cellular processes. This study supports the potential of microbial EVs as scalable bioactive platforms for modulating hair follicle microenvironmental homeostasis. Full article

Exosomes, a major subpopulation of small extracellular vesicles (sEV), are conserved mediators of intercellular communication, yet the properties of their endosomal precursors, intraluminal vesicles (ILV), have not been systematically quantified across species or imaging modalities. This study systematically evaluates ILV sizes across diverse eukaryotic species and modalities while assessing their relationship to secreted sEV sizes. We carried out two complementary meta-analyses of ILV sizes based on transmission electron microscopy (TEM) and cryogenic electron microscopy (cryo-EM) data across species. This was followed by in situ assessment of sEVs secreted by HEK293T cells with TEM, nanoparticle tracking analysis and super-resolution microscopy characterization. Across species, imaging modalities, and cellular contexts, ILV sizes were under approximately 200 nm, with a mean diameter of 100.5 nm, overlapping with the size range of sEVs. This study addresses an existing knowledge gap by systematically evaluating ILV size across species and revealing an upper size limit of approximately 200 nm. Full article

Protein condensates and filaments are both intracellular structures characterized by their ability to facilitate specific biological functions. Their formation is primarily driven by phase separation, which can be elucidated by fluorescence microscopy or electron microscopy. Here we summarize the main studies on protein condensates and filaments organized according to the techniques used, including fluorescence methods like localization screening, fluorescence co-localization spectroscopy, methods based on photobleaching, super-resolution imaging, and electron methods including negative-stain electron microscopy and cryo-EM. We also discuss correlative light/electron microscopy (CLEM), which integrates fluorescence microscopy and electron microscopy to provide complementary insights. Collectively, these methods offer temporal and spatial insights into investigating the phase separation of protein condensates and filaments, and promote the discovery of unexplored structures and their yet-to-be-characterized biological roles. Full article

Background: Cryopreservation induces oxidative stress, membrane disruption, and mitochondrial injury in spermatozoa, leading to impaired motility and fertility. Selenium, as an essential trace element, protects cells from oxidative damage through selenoproteins such as glutathione peroxidase 4 (GPX4), a critical enzyme that detoxifies lipid hydroperoxides and inhibits ferroptosis. This study investigated whether supplementation with L-selenomethionine (L-SeMet), an organic selenium source with superior bioavailability and lower toxicity than inorganic forms, could alleviate cryo-induced sperm injury by suppressing ferroptosis. Methods & Results: Dairy goat sperm were cryopreserved with 0, 2, 4, 6, 8, 10 μM L-SeMet. Supplementation with 6 μM L-SeMet significantly improved motility, membrane and acrosome integrity, and mitochondrial membrane potential. Biochemical assays showed reduced iron, ROS, and MDA levels, alongside increased ATP, SOD, and GSH contents. Proteomic analysis identified 148 differentially expressed proteins, including up-regulation of GPX4, FTH1, VDAC2, and VDAC3—core ferroptosis regulators. Metabolomic profiling further revealed enrichment in unsaturated fatty acid biosynthesis, amino acid metabolism, and the TCA cycle, pathways closely linked to ferroptosis regulation. Transmission electron microscopy confirmed that L-SeMet preserved mitochondrial ultrastructure. Mechanistically, L-SeMet mirrored the ferroptosis inhibitor N-acetyl-L-cysteine and reversed RSL3-induced oxidative damage. Western blotting verified activation of the NRF2–SLC7A11–GPX4 antioxidant axis and inhibition of KEAP1 expression. Conclusions: Collectively, these findings demonstrate that L-SeMet protects spermatozoa from cryo-induced injury by stabilizing redox homeostasis, maintaining mitochondrial function, and inhibiting ferroptosis. The results highlight ferroptosis as a critical mechanism of sperm cryodamage and identify L-SeMet as a promising metabolic intervention to enhance post-thaw sperm quality and fertility. Full article

Background: Tumor-derived small extracellular vesicles (sEV), which we call TEX, carry a cargo of molecules that resembles the producer tumor cells. Circulating freely in body fluids, TEX potentially serve as a liquid tumor biopsy. TEX horizontally transfer their cargo to various recipient cells, imparting to them pro-tumor activity. Mechanisms of TEX-driven reprogramming might involve nucleic acids, especially double-stranded (ds)DNA. Methods: TEX isolated from supernatants of human tumor cells were identified as sEV, based on their size, endocytic origin and morphology. TEX treated with DNase/RNase cocktail were examined by transmission and cryo-electron microscopy and tested for biologic activity. DNA was extracted from enzyme-treated TEX, quantified by Qubit and analyzed for fragment sizes. The presence of genomic DNA in TEX was confirmed by PCR, and sequencing of the TP53 gene fragment for a mutational signature was performed. Results: Enzymatic and microscopic studies of TEX showed that nucleic acids are present in the biocorona on the outer surface. Their removal interfered with the biocorona integrity. A short TEX exposure to DNase/RNase altered their morphology without impairing vesicle functions; longer treatments induced TEX re-organization into smaller membrane-bound vesicles. The TEX lumen contained long fragments of protected genomic DNA with a mutational signature reflecting that of the tumor. Conclusions: Nucleic acids present on the TEX surface support the vesicular integrity. The TEX lumen contains membrane-protected large (ds)DNA fragments with the mutational signature of the parent tumor. The presence of surface and luminal nucleic acids in TEX, and especially their mutational signature, suggests that TEX may serve as highly promising cancer-specific biomarkers. Full article

The use of microalgae as a food source is limited by consumers’ dislike of their organoleptic traits, primarily the intense green color and bitter taste associated with high chlorophyll content. The eukaryotic microalgae Chlorella vulgaris can grow under heterotrophic conditions, providing the opportunity to cultivate chlorophyll-less strains. In this work we applied random mutagenesis for breeding chlorophyll-deficient C. vulgaris strains. Wild-type strain was UVC-radiated, and 12 colonies with changed pigmentation were selected. Based on phenotypic stability two mutants, M6 and M11, were selected for characterization of growth, pigment and biomass accumulation. Cultivation under photo-, mixo- and heterotrophic conditions revealed distinct phenotypes for the two mutants. M6 remained chlorophyll-deficient in all cultivation conditions tested, while chlorophyll was observed in M11 when grown under light. Under heterotrophic and mixotrophic growth conditions, both mutants were chlorophyll-deficient while biomass productivity, protein content, and amino acid composition remained similar to wild type. Characterization of the cellular ultrastructure of the wild type and mutants using cryo Focused Ion-Beam Scanning Electron Microscopy revealed that functional chloroplasts and thylakoid membranes were absent in the mutants. Our work demonstrates how a simple approach using UV mutagenesis and visual screening can provide novel strains of C. vulgaris with traits for improved consumer acceptance, without compromising the use of the algae biomass as a protein-rich food source. Full article

Mitochondria play a crucial role in cellular bioenergetics, signaling, and metabolism; yet, many fundamental mechanisms such as the proton transfer along the membranes, the link between membrane curvature and oxidative phosphorylation, and the nanoscale organization of enzyme supercomplexes remain poorly understood due to the limitations of classical biochemical approaches. This review addresses this gap by systematically analyzing the contemporary physical methods used to investigate the mitochondrial structure and function from the micro to nano scale. It covers advanced fluorescence and super-resolution microscopy, electron and volume electron microscopy, and scanning probe techniques, as well as cryo-electron tomography for resolving supramolecular assemblies in near-native conditions. The review highlights the applications of the modern fluorescent probes, expansion and phase microscopy, and machine-learning-based image analysis for a quantitative assessment of the mitochondrial morphology, membrane potential, and dynamics in living cells and tissues. Complementary spectroscopic and scattering methods, including Raman spectroscopy, NMR, and X-ray and neutron scattering, are discussed as tools for probing the redox state, metabolite composition, and membrane organization. Emphasis is placed on integrating high-resolution experimental data with advanced computational frameworks to test competing models of mitochondrial function and pathology, and to guide the development of biomimetic and biomedical technologies. Full article

The aim of our study was to determine the importance of different pitcher syndrome characters (size of the trap, the presence of inner microscopic surface coverage, physical properties of the pitcher fluid) for insect trapping efficiency using artificial, “biomimetic” pitchers. We performed trapping experiments with Drosophila melanogaster flies, applied cryo scanning electron microscopy for characterization of the topography of surface coatings and visualization of their contaminability effects on insect attachment organs, and conducted contact angle measurements with different liquids used in experiments. The type of the liquid used as the pitcher fluid had the most important impact on the trapping efficiency; surfactant-containing liquids exhibiting strong wetting properties provided a high number of trapped flies. The diameter of the trap rather than its height influenced insect trapping efficiency; apparently, because wider traps provide a larger space for more insects to get into a trap, they captured more flies in comparison to narrower traps. The presence of both the calcium carbonate and kaolin coatings mimicking the epicuticular wax coverage inside pitchers in many Nepenthes species additionally contributed to the trapping success due to a reduction of contact between insect feet and the trap surface and to contamination of flies’ attachment organs by detached microparticles. Full article

This study used cryoSEM to analyze the seasonal stability of leaf surface micromorphology in cereal hybrids derived from crossing maternal ×Trititrigia cziczinii × Thinopyrum junceum lines with paternal wheat–wheatgrass hybrids. Over two growing seasons, relatively rare traits showed high stability, while most traits exhibiting initial diversity demonstrated seasonal variability. Paternal traits (hairs, prickles, elongated silica cells) predominated in hybrids, and hybrid diversity correlated significantly with paternal, but not maternal, line diversity. In 2025, a significant decrease in some paternally specific traits and an increase in rounded silica cells were observed compared to 2024. Coordinated dynamics were revealed: variations in maternal traits correlated positively with each other and negatively with some paternal traits. While certain micromorphological features exhibited relative stability, employing such traits for taxonomic purposes necessitates caution and a thorough understanding of their inherent variability ranges. Full article

Poliovirus (PV), a historically significant enterovirus responsible for severe paralytic diseases, has seen its incidence dramatically reduced through widespread vaccination efforts, propelling global eradication initiatives. Despite the success of traditional oral poliovirus vaccines (OPVs) and inactivated poliovirus vaccines (IPVs), challenges such as vaccine-derived virus reversion and biosafety concerns during vaccine production persist. Virus-like particle (VLP) vaccines, which mimic native viral structures without containing viral genomes, offer enhanced safety profiles and robust immunogenicity, positioning them as promising candidates for next-generation poliovirus vaccines, especially in the post-certification era. This review systematically summarizes current progress in poliovirus VLP vaccine research, including the diverse expression systems employed for VLP production, strategies for peptide assembly and stabilization, and evaluations of antigenicity and immunogenicity. Additionally, it highlights structural analyses utilizing cutting-edge cryo-electron microscopy. By integrating recent developments in genetic engineering, structural biology, and immunology, this article discusses the advantages and challenges associated with poliovirus VLP vaccines and explores future directions aimed at supporting the global goal of a poliovirus-free world. This comprehensive overview aims to provide a theoretical foundation and technical guidance to facilitate the development and deployment of safer and more effective poliovirus vaccines. Full article

Extracellular vesicles (EVs) are membrane-bound particles secreted by most cell types that play a pivotal role in intercellular communication via transporting protein, nucleic acid, lipid, and metabolite cargos. Among EVs, exosomes are a well-characterized subtype, typically ranging from 10–150 nm in diameter and originating from the endosomal pathway via the formation of multivesicular bodies that fuse with the plasma membrane. EVs/exosomes can be isolated from various biological fluids and cultured cells, with production and yield influenced by the cell type and culture conditions. Isolation methods, including ultracentrifugation or density-based ultracentrifugation, tangential flow filtration, size-exclusion chromatography, immunoaffinity and membrane-affinity capture, and recently developed commercial equipment, offer distinct advantages and limitations in terms of purity, scalability, and exosome integrity. Characterization techniques, such as nanoparticle tracking analysis (NTA), transmission electron microscopy (TEM), cryogenic electron microscopy (cryo-EM), atomic force microscopy (AFM), Western blotting, flow cytometry, and dynamic light scattering (DLS), assess exosome size, morphology, and biomarker expression. Given their biocompatibility and inherent targeting capabilities across a diverse range of diseases, EVs/exosomes hold clinical promise as diagnostic biomarkers, cell-free therapeutics, drug delivery vehicles, immune modulators, and in regenerative medicine. However, these emerging fields in exosome medicine continue to face challenges in standardizing EV sourcing, production, purification, yield, bio-targeting, drug loading, and drug delivery. While EVs/exosomes represent a rapidly advancing frontier in biomedical science, robust protocols for standardization and scalable production will be essential for their successful translation into clinical applications. This article provides a comprehensive overview of EV/exosome origins, their biological functions, the approaches for their isolation and characterization, and their therapeutic potential. Full article

Exocytosis is a fundamental biological process in all eukaryotes involving the vesicular transport of cellular cargo to the plasma membrane or extracellular space. However, in walled organisms such as plants, fungi, and certain archaea, the rigid cell wall presents a unique barrier to vesicular secretion. The dense, structured matrix of the mature cell wall restricts the passage of macromolecules and vesicles, raising the fundamental question of how vesicle secretion operates in this constrained environment. In the present study, we integrate transmission electron microscopy (TEM), cryo-electron tomography (cryo-ET), and serial section electron tomography (SS-ET) to investigate the structural mechanisms underlying cell wall-related exocytosis. We demonstrate that secretory vesicles do not undergo fusion with the plasma membrane in cell wall-related vesicle secretion in Arabidopsis thaliana (A. thaliana) and Saccharomyces cerevisiae (S. cerevisiae). Furthermore, in the floral nectary of A. thaliana, we identify the details of vesicles inside the multivesicular body (MVB)-like structure in cell wall. Collectively, these results reveal distinct vesicle secretion pathways adapted to the presence of a cell wall, expanding our understanding of how secretory vesicles traverse and deliver cargo beyond the plasma membrane in walled eukaryotic cells. Full article