Search Results (1,107)

Major depressive disorder (MDD) is associated with complex metabolic alterations. In this study, we applied a multiplatform metabolomics approach (GC-MS and LC-MS) to characterize the plasma extracellular vesicle (EV) metabolome in healthy controls (N = 50), responsive MDD patients (N = 60), and patients with treatment-resistant depression (TRD; N = 65). Longitudinal analyses were performed following 8-week treatment with duloxetine (N = 30), bright-light therapy (BLT; N = 30), or esketamine (N = 35). A total of 230 metabolites were identified, with the most pronounced metabolic alterations observed in TRD patients, particularly in lipid, amino acid, and energy metabolism pathways. Elevated lysophospholipids and fatty acids in TRD suggested dysregulated lipid metabolism and inflammatory processes. All treatments resulted in clinical improvement, accompanied by partial normalization of metabolic profiles. Duloxetine treatment was associated with modulation of amino acid and glycerophospholipid metabolism, including increases in tryptophan-related metabolites and normalization of specific lipid species. BLT primarily reduced lysophospholipids and mannose levels, while esketamine modulated metabolites related to lipid turnover, short-chain fatty acids, carbohydrate metabolism, and neuroendocrine function, including increased thyrotropin-releasing hormone levels. These findings support the concept that TRD represents a biologically distinct and more metabolically dysregulated subtype of depression and highlight EV-based metabolomics as a promising approach for elucidating disease and treatment mechanisms. Full article

Background/Objectives: Dietary treatment may play a complimentary part alongside established medical treatment pathways for children with Crohn’s disease. The aim of this review was to explore the impact of a range of dietary treatments, including the capability of preserving the mucosal barrier, during the maintenance phase of Crohn’s disease. Methods: Randomised controlled trials and cohort studies were retrieved from five databases (Cochrane library, MEDLINE, EMBASE, ScienceDirect, and Web of Science) and through hand searching (last search: June 2025). In the inclusion criteria, this review only included studies that directly assessed children with Crohn’s disease who achieved clinical remission after the induced phase but simultaneously appeared to have signs of inflammation. Results: Six studies were identified, three of which reported outcomes directly associated with the mucosal barrier, while the other studies reported intestinal inflammation and nutritional status. A range of dietary approaches were investigated, with mixed outcomes. A carbohydrate-based diet had a mixed-effect influence on the mucosal barrier, whereas an exclusion diet significantly reduced intestinal inflammation (p = 0.01). One study reported that bovine colostrum (BC) milk (a novel approach) demonstrated mucosal integrity improvement, while the timing of partial enteral nutrition (PEN) also improved nutritional status. Importantly, compliance with all these strict regimes is complex and difficult to implement, even with the support of a dietitian. Conclusions: Consideration of the most appropriate dietary approach within CD management including remission has reported mixed effects to date. Further research is needed, especially to establish the benefits and any negative consequences of dietary intervention more clearly, and especially regarding mucosal integrity. Full article

The development of sustainable alternatives to fossil-based feedstocks is a global priority in light of climate change and resource depletion. Seaweeds, particularly green seaweeds, represent promising candidates for biorefinery applications due to their rapid growth, high carbohydrate content, and non-competition with arable land. In this study, the feasibility of lactic acid production from acid hydrolysates of the green seaweed Ulva pertusa was systematically investigated. Proximate composition analysis revealed that dried Ulva pertusa contained 52.3% carbohydrates, highlighting its suitability as a fermentation substrate. Acid hydrolysis with dilute sulfuric acid released 23.8 g of fermentable monosaccharides per 100 g of biomass, with L-rhamnose and D-glucose as the predominant sugars. Fermentation experiments were conducted using five Lactobacillus strains (L. casei, L. plantarum, L. brevis, L. salivarius, and L. rhamnosus). Among these, L. rhamnosus and L. salivarius achieved the highest lactic acid yields (0.66 g g⁻¹), followed by L. plantarum (0.63 g g⁻¹), whereas L. casei and L. brevis exhibited comparatively lower yields (0.46 and 0.39 g g⁻¹, respectively). Time-course analysis demonstrated that the superior strains reached maximum productivity within 9 h, significantly faster than typical lignocellulosic feedstocks such as corn stover, which require extensive pretreatment and longer fermentation times. Furthermore, the mineral-rich composition of Ulva pertusa (notably Mg²⁺ and Ca²⁺) provided intrinsic nutrients that supported microbial growth, thereby reducing the requirement for external supplementation. Comparative evaluation with lignocellulosic hydrolysates confirmed that Ulva pertusa offers higher efficiency, faster kinetics, and lower process complexity. To our knowledge, this work represents the first comprehensive assessment of multiple Lactobacillus strains for lactic acid production from Ulva pertusa hydrolysates. The findings highlight the unique advantages of green seaweeds as a sustainable biomass resource and contribute to the advancement of marine biomass-based biorefineries. Future studies should focus on improving the utilization of non-fermentable sugars, optimizing fermentation strategies, and evaluating techno-economic feasibility on an industrial scale. Full article

Purpose: Low HDL cholesterol (HDL-C) is a common lipid abnormality among East Asian populations, including Koreans, and is closely associated with increased cardiovascular disease risk. This has traditionally been linked to high-carbohydrate dietary patterns. Therefore, it is essential to assess how recent changes in dietary and lifestyle habits in Korea have influenced HDL-C levels. Methods: This study utilized data from the Korea National Health and Nutrition Examination Survey (KNHANES), conducted from 2014 to 2023. Using a complex sampling method, we analyzed annual trends in carbohydrate intake and HDL-C levels in Korean adults (aged 20–59 years), stratified by gender (male and female) and age (20–39 and 40–59 years), and identified determinants such as demographic factors, health behaviors, and dietary intake. Results: The primary factor in the increase in HDL-C levels was a reduction in carbohydrate intake. When analyzed by age and gender, this significant upward trend in HDL-C levels was consistently observed across all four groups: young men, middle-aged men, young women, and middle-aged women. However, the increase in obesity, indicated by increased BMI and waist circumference, had a negative impact on the improvement in HDL-C levels. The recent improvement in HDL-C levels in Korean adults can be attributed to the successful national dietary policy (reducing carbohydrate intake and increasing healthy fat intake). Conclusions: Public health policies should thus continue emphasizing healthy dietary practices, strengthening smoking cessation initiatives, and managing obesity. These findings suggest similar dietary and lifestyle interventions could effectively reduce cardiovascular disease risk in other Asian populations undergoing comparable dietary transitions. Full article

The global prevalence of obesity continues to rise, posing serious risks to human health largely because obesity itself leads to metabolic disorders of carbohydrate and lipids. Currently, effective and healthy interventions for lowering blood glucose, reducing blood lipids, and promoting weight loss remain limited due to the complexity of obesity development. Lactobacillus plantarum (GDMCC 1.140) was shown to promote catabolic processes and reduce hepatic lipid accumulation in largemouth bass fed with high-starch feed (HSF) in our previous study; however, molecular mechanisms underlying the function of this probiotic remain unclear. Here, we evaluated the effects of L-carnosine, one of metabolites produced by Lactobacillus plantarum, on carbohydrate and lipid metabolisms in an obesity model of zebrafish, which was induced by HSF. Histopathological analyses of livers from different groups indicated that a dietary supplement with L-carnosine can alleviate hepatic impairment and reduce lipid accumulation in the hepatocytes of obese zebrafish. Transcriptomic analyses revealed that L-carnosine supplementation can reverse the expression of about 70 HSF-induced genes, mainly gene-specific transcription regulators and metabolite interconversion enzymes. Furthermore, approximately 250 HSF-inhibited genes were found to be up-regulated by L-carnosine, reaching levels comparable to those in normal-starch feed (NSF) zebrafish. These genes, targeted by L-carnosine and inhibited by HSF, are highly enriched in GO terms such as lipid metabolic process, small molecule metabolic process, and cellular response to chemical stimulus, with monocarboxylic acid metabolic process, modified amino acid metabolic process and aldehyde metabolic process following, and in KEGG pathways of carbohydrate, lipid and amino acid metabolisms, such as pentose and glucuronate interconversions, glycolysis/gluconeogenesis, glycerolipid metabolism, pentose phosphate pathways, fatty acid degradation, beta-alanine metabolism and arginine and proline metabolism. These findings provide functional and molecular evidence that L-carnosine can ameliorate HSF-induced disorders of carbohydrate and lipid metabolisms. Full article

Background/Objectives: Sea urchin gonads (“roe”) are a valuable seafood product and a chemically complex matrix whose composition varies with physiology and environment. We present a biphasic extraction and ¹H NMR workflow to build a reusable reference inventory of polar metabolites and apolar lipid features in Paracentrotus lividus. Methods: Gonads from 37 adults (23 males, 14 females) collected at two sites (Alicante and Jávea–Dénia, Spain; October 2024) were lyophilized, extracted with methanol/chloroform/water, and analyzed by 400 MHz ¹H NMR in buffered aqueous solution (polar) and CDCl₃ (apolar). Polar metabolite identification combined 1D patterns with database matching and ¹H–¹³C HSQC confirmation on representative samples, yielding 71 annotated resonances corresponding to 37 metabolites spanning amino acids, osmolytes/quaternary amines, carbohydrates/aminosugars, and nucleoside/purine-related compounds. Results: Polar fingerprints enabled supervised modelling: PLS-LDA separated sexes with low cross-validated error, and SPA/COSS ranking highlighted glycine, alanine, creatine and osmolyte-associated signals as key discriminants; pathway mapping supported the enrichment of amino-acid and one-carbon/purine networks. Apolar spectra were annotated at the motif level and used for lipid-index estimation, indicating substantial unsaturation but low docosahexaenoic acid (DHA) and modest sex effects. Conclusions: The curated peak lists and reporting framework facilitate reproducible NMR annotation and future comparative studies of P. lividus gonads. Full article

Agro-industrial waste impacts populations worldwide. Food waste, in turn, is a major source of complex lipids, carbohydrates, and other substances. Therefore, it is crucial to convert food waste into products that reduce environmental problems. Enzymatic hydrolysis has advantages over chemical hydrolysis. Examples include the enzymatic hydrolysis of starch by α-amylase and the hydrolysis of inulin by inulinase, which occur under milder environmental and temperature conditions than acid hydrolysis of starch or inulin. Despite these milder temperature conditions, during substate hydrolysis, enzyme deactivation occurs under exposure to temperature. As temperature increases above $T_{opt}$ (which maximizes catalytic activity), enzyme deactivation becomes more pronounced, leading to a decrease in enzyme activity. Therefore, determining the rate constant of deactivation $k_d$, during biotransformation is an important aspect in understanding enzyme kinetics. Most experimental studies focus on changes in enzyme activity with time and temperature. However, enzyme deactivation also occurs during enzymatic reactions conducted at different temperatures, and this process is characterized by specific deactivation parameters. The study is to present the rate constants of deactivation $k_d$, for selected biotransformation processes. The selected biotransformation processes are hydrolysis of olive oil by lipase, hydrolysis of inulin by inulinase, and hydrolysis of starch by α-amylase. Given the widespread use of enzymes in industry, the information on enzyme deactivation presented in this study can be used by engineers involved in modeling and optimizing enzymatic processes. This knowledge is also essential for the effective and sustainable use of enzymes in industrial applications. It is important to emphasize that the deactivation parameters discussed in this study also carry significant economic, social, and environmental implications. Full article

Pyruvate dehydrogenase complex deficiency (PDCD) is a heterogenous mitochondrial inborn error in carbohydrate oxidation manifesting as congenital lactic acidosis. PDCD presents diagnostic and therapeutic challenges. While no curative treatment exists for PDCD, certain therapeutic modalities may improve prognosis and ameliorate symptom severity. This article examines the effectiveness of treatments for PDCD and presents a case series of three patients with PDCD. A scoping literature review was conducted for treatments of PDCD. Patient data for case reports was extracted retrospectively from electronic medical records from a large tertiary hospital. We reviewed and summarized findings from seven preclinical studies and ten human studies, which showed that dichloroacetate and the ketogenic diet were the most frequently studied treatments. Therapeutic approaches observed select positive outcomes such as reduced lactate levels, improved neuropathological manifestations, and increased longevity. However, most interventions have yet to be rigorously investigated. Early diagnosis of PDCD is integral, as treatment methods may offer improved clinical and biochemical outcomes. Clinical trials of existing and novel treatments are necessary to improve management and further understand the prognostic potential of this metabolic disorder. Full article

Soybean (Glycine max (L.) Merr.) is a globally important legume valued for the high protein, oil, and carbohydrate content of its seeds. However, it is difficult to simultaneously optimize the content of these three macronutrients due to their negatively correlated metabolic pathways and complex quantitative inheritance patterns. In this study, a genome-wide association study (GWAS) was conducted to elucidate the genetic architecture underlying the seed protein, oil, and carbohydrate content in 328 soybean accessions evaluated over two years using near-infrared spectroscopy. Significant negative correlations (r = −0.323 to −0.656, p < 0.001) were observed between the three traits, confirming the trade-off in carbon partitioning during seed development. The GWAS identified nine significant loci distributed across chromosomes 4, 6, 8, 9, 10, 16, and 18 as stable quantitative trait loci (QTLs) regulating the three traits. Of these, three pleiotropic loci (qProOil.4, qProOil.16, and qOilCarb.6) were found to be associated with multiple seed compositional traits. Haplotype analysis revealed seven haplotype blocks with distinct phenotypic variation, indicating that they have the potential for use as trait-specific markers in marker-assisted selection. Functional annotation of the stable QTL regions identified 22 putative genes, among which five candidate genes, Glyma.06g201700, Glyma.08g281900, Glyma.09g164900, Glyma.13g155600, and Glyma.16g209800 were likely to be involved in carbon allocation, protein biosynthesis, lipid metabolism, and carbohydrate modification pathways based on their relative expression levels. Overall, this study enhances the understanding of the genetic and molecular mechanism controlling the composition of soybean seed and identifies promising genomic targets for precision breeding programs aimed at improving nutritional quality. Full article

Meat quality characteristics are important economic traits of ducks. To identify the molecular bases of these traits, we performed an integrated multi-omics analysis (metabolomics, transcriptomics, and miRNAomics) that compared the breast muscle of 300-day-old Liancheng white duck (LD), which is a lean-type breed prized for its soup flavor, and traditional meat duck Cherry Valley duck (CD), which is a fast-growing fat-type breed used for roasting. The results show that LD had higher levels of amino and bile acids, while CD had higher levels of carbohydrates. Integration analysis revealed key breed-specific molecular signatures. In LD, upregulation of the amino acid transporters SLC7A6 and SLC6A9 related to amino acid transport was consistent with elevated intramuscular amino acids. For carbohydrate metabolism, SOCS3—a well-established negative regulator of glucose uptake in mammalian skeletal muscle—was significantly upregulated in LD, consistent with their lower intramuscular carbohydrate levels. SLC6A9 and SOCS3 were predicted to be negatively regulated by oan-miR-1386. In LD, upregulation of the bile acid biosynthesis gene CH25H paralleled the higher bile acid content, suggesting complex, tissue-specific regulation of these pathways. This integrated analysis provides a resource for candidate genes, miRNAs, and metabolic pathways underlying breed-specific meat quality traits in ducks. The findings generate testable hypotheses for future functional studies and offer potential molecular targets for breeding strategies aimed at improving poultry meat quality. Full article

Advanced glycation end products (AGEs) such as Nε-carboxymethyllysine (CML) and Nε-carboxyethyllysine (CEL) are implicated in chronic disease processes in humans and may serve as biomarkers of dietary exposure and metabolic health. Urinary measurement of AGEs is of interest due to its non-invasive nature and relevance to biobanking and field-based sample collection; however, AGE stability in urine under common handling conditions has been poorly characterized. This study evaluates the short-term stability of CML and CEL in canine urine stored at room temperature (20 °C) for up to 168 h prior to −80 °C storage. Midstream free-catch urine samples from eight healthy dogs were aliquoted, stored at defined intervals, and analyzed in duplicate using liquid chromatography–mass spectrometry (LC-MS) with isotope-labeled standards. Results demonstrate minimal detectable changes in CML and CEL concentrations, as well as in the CML/CEL ratio, over the ambient storage period. Inter-replicate agreement is high, and regression and non-parametric analyses show no association between storage duration and analyte concentration. These findings indicate that urinary CML and CEL measurements may remain reliable despite delayed processing, supporting field-based sampling and retrospective analyses. Evaluation of additional AGE species and storage conditions will further inform best practices for sample handling in veterinary and comparative biomedical research. Full article

Drought stress is a significant environmental factor affecting plant growth, fruit quality and distribution. Wild jujube is an important species of eco-economic forest tree. In this study, two wild jujube families, ‘NO. 1’ (tolerant) and ‘NO. 5’ (sensitive), which show significant differences in morphological and physiological indicators in drought treatment, are considered. Compared with the ‘NO. 5’, the ‘NO. 1’ exhibited lower water loss, leaf yellowing and abscission rates, as well as reduced malondialdehyde (MDA) content, while showing higher superoxide dismutase (SOD) activity and elevated levels of soluble sugars (SS), soluble proteins (SP), and proline (Pro). In contrast, the ‘NO. 5’ suffered more severe damage to leaf epidermal cells compared with the ‘NO. 1’, accompanied by a significant decline in net photosynthetic rate (A) and instantaneous water use efficiency (WUEi). Transcriptomic profiles between two wild jujube families with markedly different drought responses (withholding water for 15 days) are shown. The two wild jujube families included 3238 up-regulated and 2675 down-regulated differentially expressed genes (DEGs). Many DEGs enriched in the GO and KEGG pathways are related to antioxidant activity, transmembrane transport, carbohydrate biosynthesis and metabolism, plant hormones, and photosynthesis. The biosynthesis of amino acids, the MAPK signaling pathway, plant hormone signal transduction, and flavonoid and alkaloid biosynthesis were the transcriptome modifications most significantly altered by drought stress. Real-time quantitative polymerase chain reaction (RT-qPCR) was used to verify the precision of the RNA-seq data. ZjJIP23-1, ZjbZIP53, ZjSPS8, ZjCAO, ZjADH1 and ZjERF39 may play important roles in the drought tolerance of the wild jujube. This study provides a solid foundation for further studies on the complex mechanisms and breeding of drought-resistant plants in wild jujube. Full article

The genus Polygonatum encompasses numerous species with complex phenotypes, necessitating robust molecular markers for accurate species identification and superior germplasm screening. This study identified and developed SSR markers based on transcriptome analysis of three Polygonatum species to assess the genetic diversity of Polygonatum resources. The results showed that a total of 43,217 SSR loci were detected, and 31,703 primer pairs were successfully designed. Characterization of SSR motifs revealed mono-nucleotide repeats (SNRs) were the most frequent (59.45%). Unigenes containing SSRs were annotated across seven databases. In KEGG, 222 pathways were assigned, with genes annotated to carbohydrate metabolism being the most abundant. To validate and apply these markers, 100 primer pairs covering all eight SSR locus types were tested across 21 Polygonatum accessions. Of these, 49 polymorphic markers were identified, revealing high genetic diversity, with average expected heterozygosity (He) and polymorphism information content (PIC) values of 0.763 and 0.718, respectively, alongside significant population differentiation (Fst = 0.307). Cluster analysis grouped 21 accessions into three groups, which correlated with certain agronomic traits. Nine core markers were selected that effectively distinguished six species and intraspecific groups. Notably, the FB-9 marker, associated with polysaccharide biosynthesis, effectively discriminated among six Polygonatum species and also distinguished distinct germplasm resources within P. kingianum var. grandifolium. Overall, the transcriptome-derived SSR markers validated in this study constitute valuable resources for gene function analysis, population genetics research, and variety identification and genetic improvement of Polygonatum. Full article

Pollen development is a complex process that is highly sensitive to environmental stresses. Abscisic acid (ABA), a key hormone mediating plant growth and stress responses, has been implicated in the regulation of sexual reproduction, especially pollen development, yet its precise regulatory role remains unclear. This study investigated the effects of exogenous ABA on Arabidopsis thaliana pollen development and function through integrated phenotypic, cytological, and transcriptomic approaches. ABA treatment specifically impaired pollen function by reducing germination rates and inhibiting pollen tube elongation, which resulted in shortened siliques and decreased seed set, without affecting pollen morphology or viability. Transcriptome analysis of mature anthers revealed a transient and time-dependent transcriptional response, with the number of differentially expressed genes (DEGs) peaking at 8 h post-ABA treatment and markedly declining by 22 h. These DEGs were enriched in stress-response pathways (e.g., salt, cold, and dehydration), hormone signaling, and carbohydrate metabolism. Moreover, we identified 25 differentially expressed transcription factors and 16 pollen development and function-related genes, highlighting their key roles in ABA-mediated regulation. In parallel, 146 differentially expressed lncRNAs (DELs) were identified, which formed 144 cis-regulatory pairs with genes involved in ABA response and pollen tube growth, with their predicted targets enriched in pathways such as hormone and MAPK signaling, carbohydrate metabolism and stress response. Trans-regulatory analysis further revealed that these DELs co-expressed with DEGs in modules enriched for stress response, pollen development, and tube growth pathways. Notably, key pollen function genes showed strong co-expression with DELs, indicating that lncRNAs participate in ABA-induced transcriptional reprogramming that shifts metabolic resources from growth to defense, thereby suppressing pollen germination and tube elongation. Together, these findings elucidate a coordinated regulatory network involving mRNAs, lncRNAs and transcription factors roles in modulating ABA responses during pollen/anther development. Full article

Wheat is rich in carbohydrates and proteins but is susceptible to pest infestation and microbial contamination during storage. Owing to itself high efficiency, energy savings, and lack of chemical residues, electron beam irradiation (EBI) has been widely applied for disinfesting and sterilizing cereals and has been shown to influence dough quality. Notably, starch is present within complex wheat flour systems during processing, and its irradiation response may differ from that of purified systems. In this study, the effects of different EBI doses (0, 3, 6, 9 and 12 kGy) on the multiscale structure and physicochemical properties of wheat starch isolated from irradiated dough were systematically investigated, and key analytical techniques such as Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), and rheological analysis were employed to elucidate the mechanisms underlying its impact on the dough thermomechanical behavior of dough. The results demonstrated that EBI weakened gluten–starch interactions and disrupted gluten network the continuity and compactness of the gluten network, resulting in significant dough farinography and pasting property changes. Compared with those of the control group, the dough development and stability time of the 12 kGy sample decreased from 3.920 and 6.465 to 0.970 and 1.290, respectively (p < 0.05). Moreover, irradiation induced cracks on the starch surface, reduced its molecular weight, and disrupted its crystallinity and short-range order. These changes resulted in decreases in the thermal stability level and swelling capacity of starch, while increasing its solubility. A correlation analysis revealed that the starch chain length distribution, molecular weight, molecular order, and pasting properties are key determinants of EBI-induced dough quality changes. This study provides theoretical insights into the applicability of EBI in the context of wheat flour storage and quality modulation. Full article