Search Results (693)

Vermicomposting is a sustainable biotechnological process that transforms organic waste through the synergistic activity of earthworms, such as Eisenia fetida, and their associated microbiota. This study evaluated bacterial and physicochemical dynamics during the vermicomposting of bovine manure by analyzing the microbial composition of the substrate and the gut of E. fetida at three time points (weeks 0, 6, and 12). The V3–V4 region of the 16S rRNA gene was sequenced, and microbial diversity was characterized using QIIME2. Significant differences in alpha diversity (observed features, Shannon index, and phylogenetic diversity) and beta diversity indicated active microbial succession. Proteobacteria, Bacteroidota, and Actinobacteriota were the dominant phyla, with abundances varying across habitats and over time. A significant enrichment of Proteobacteria, Bacteroidota, and the genera Chryseolinea, Flavobacterium, and Sphingomonas was observed in the manure treatments. In contrast, Actinobacteriota, Firmicutes, and the genera Methylobacter, Brevibacillus, Enhygromyxa, and Bacillus, among others, were distinctive of the gut samples and contributed to their dissimilarity from the manure treatments. Simultaneously, the physicochemical parameters indicated progressive substrate stabilization and nutrient enrichment. Notably, the organic matter and total organic carbon contents decreased (from 79.47% to 47.80% and from 46.10% to 27.73%, respectively), whereas the total nitrogen content increased (from 1.70% to 2.23%); these effects reduced the C/N ratio, which is a recognized indicator of maturity, from 27.13 to 12.40. The macronutrient contents also increased, with final values of 1.41% for phosphorus, 1.50% for potassium, 0.89% for magnesium, and 2.81% for calcium. These results demonstrate that vermicomposting modifies microbial communities and enhances substrate quality, supporting its use as a biofertilizer for sustainable agriculture, soil restoration, and agrochemical reduction. Full article

Soil organic carbon (SOC) is an important part of the global C pool and is sensitive to climate change. The SOC content and fractions of rice paddies along four elevations (250, 1150, 1600 and 1800 m) on the same slope in four seasons (spring, summer, autumn and winter) at Yuanyang Terrace in southwest China were investigated, and their relationship with environmental factors was analyzed. The contents of SOC, unprotected SOC (uPOM), physically protected SOC (pPOM) and biochemically protected SOC (bcPOM) in rice paddies at a low elevation (250 m), were significantly lower by 49–51% than those at relatively high elevations (1600 m and 1800 m). Among the SOC fractions, the highest proportion (33–50%) was uPOM, followed by pPOM and bcPOM (accounting for 17–40%), and the lowest proportion was chemically protected SOC (cPOM). In addition, there were interseasonal differences among the contents of SOC fractions, with a significantly higher content of SOC, uPOM and pPOM at an elevation of 1600 m in summer than in the other three seasons, whereas the cPOM content at an elevation of 250 m in spring was significantly higher than in the other three higher elevations. According to the redundancy analysis (RDA), total nitrogen was the key environmental factor, with an explanatory degree of 56% affecting the contents of SOC and its fractions. Thus, the SOC content increased with increasing elevation, and physical and biochemical protection were potential stabilization mechanisms responsible for their stability in the rice paddy of Yuanyang Terrace. These results provides empirical evidence for the elevational distribution patterns and seasonal dynamics of SOC fractions in rice paddies across Yuanyang Terrace. These findings highlight the importance of physical and biochemical protection mechanisms in stabilizing SOC in rice paddies, which could enhance long-term C sequestration and contribute to climate change mitigation in terraced agroecosystems. Full article

Understanding root decomposition dynamics is essential to address declining carbon sequestration and nutrient imbalances in monoculture plantations. This study elucidates how forest gaps regulate Pinus massoniana root decomposition through comparative methodological analysis, providing theoretical foundations for near-natural forest management and carbon–nitrogen cycle optimization in plantations. The results showed the following: (1) Root decomposition was significantly accelerated by the in situ soil litterbag method (ISLM) versus the traditional litterbag method (LM) (decomposition rate (k) = 0.459 vs. 0.188), reducing the 95% decomposition time (T_0.95) by nearly nine years (6.53 years vs. 15.95 years). ISLM concurrently elevated the root potassium concentration and reconfigured the relationships between root decomposition and soil nutrients. (2) Lower-order roots (orders 1–3) decomposed significantly faster than higher-order roots (orders 4–5) (k = 0.455 vs. 0.193). This disparity was amplified under ISLM (lower-/higher-order root k ratio = 4.1) but diminished or reversed under LM (lower-/higher-order root k ratio = 0.8). (3) Forest gaps regulated decomposition through temporal phase interactions, accelerating decomposition initially (0–360 days) while inhibiting it later (360–720 days), particularly for higher-order roots. Notably, forest gap effects fundamentally reversed between methodologies (slight promotion under LM vs. significant inhibition under ISLM). Our study reveals that conventional LM may obscure genuine ecological interactions during root decomposition, confirms lower-order roots as rapid nutrient-cycling pathways, provides crucial methodological corrections for plantation nutrient models, and advances theoretical foundations for precision management of P. massoniana plantations. Full article

Integrated rice–crayfish (Oryza sativa–Procambarus clarkii) co-culture (RC) systems have gained prominence due to their economic benefits and ecological sustainability; however, the interactions between soil properties and microbial communities in such systems remain poorly understood. This study evaluated the effects of the RC systems on soil physicochemical characteristics and microbial dynamics in paddy fields of southern Henan Province, China, over the 2023 growing season and subsequent fallow period. Using a randomized complete design, rice monoculture (RM, as the control) and RC treatments were compared across replicated plots. Soil and water samples were collected post-harvest and pre-transplanting to assess soil properties, extracellular enzyme activity, and microbial community structure. Results showed that RC significantly enhanced soil moisture by up to 30.2%, increased soil porosity by 9.6%, and nearly tripled soil organic carbon compared to RM. The RC system consistently elevated nitrogen (N), phosphorus (P), and potassium (K) throughout both the rice growth and fallow stages, indicating improved nutrient availability and retention. Elevated extracellular enzyme activities linked to carbon, N, and P cycling were observed under RC, with enzymatic stoichiometry revealing increased microbial nutrient limitation intensity and a shift toward P limitation. Microbial community composition was significantly altered under RC, showing increased biomass, a higher fungi-to-bacteria ratio, and greater relative abundance of Gram-positive bacteria, reflecting enhanced soil biodiversity and ecosystem resilience. Further analyses using the Mantel test and Random Forest identified extracellular enzyme activities, PLFAs, soil moisture, and bulk density as major factors shaping microbial communities. Redundancy analysis (RDA) confirmed that total potassium (TK), vector length (VL), soil pH, and total nitrogen (TN) were the strongest environmental predictors of microbial variation, jointly explaining 74.57% of the total variation. Our findings indicated that RC improves soil physicochemical conditions and microbial function, thereby supporting sustainable nutrient cycling and offering a promising, environmentally sound strategy for enhancing productivity and soil health in rice-based agro-ecosystems. Full article

The environmental heterogeneity caused by altitude can lead to trade-offs in nutrient utilization and allocation strategies among plant organs; however, there is still a lack of research on the nutrient variation in the “flower–leaf–branch–fine root–soil” systems of native shrubs along altitude gradients in China’s unique karst regions. Therefore, we analyzed the carbon (C), nitrogen (N), and phosphorus (P) contents and their ratios in flowers, leaves, branches, fine roots, and surface soil of Hypericum kouytchense shrubs across 2200–2700 m altitudinal range in southwestern China’s karst areas, where this species is widely distributed and grows well. The results show that H. kouytchense organs had higher N content than both global and Chinese plant averages. The order of C:N:P value across plant organs was branches > fine roots > flowers > leaves. Altitude significantly affected the nutrient dynamics in plant organs and soil. With increasing altitude, P content in plant organs exhibited a significant concave pattern, leading to unimodal trends in the C:P of plant organs, as well as the N:P of leaves and fine roots. Meanwhile, plant organs except branches displayed significant homeostasis coefficients in C:P and fine root P, indicating a shift in H. kouytchense’s P utilization strategy from acquisitive-type to conservative-type. Strong positive relationships between plant organs and soil P and available P revealed that P was the key driver of nutrient cycling in H. kouytchense shrubs, enhancing plant organ–soil coupling relationships. In conclusion, H. kouytchense demonstrates flexible adaptability, suggesting that future vegetation restoration and conservation management projects in karst ecosystems should consider the nutrient adaptation strategies of different species, paying particular attention to P utilization. Full article

In order to achieve the efficient utilization of agricultural by-products and overcome the bottleneck of animal feed shortages in dry seasons, this study utilized corn stover (CS; Zea mays L.) as a material to systematically investigate the dynamic changes in the fermentation quality, bacterial community structure, and pathogenic risk of silage under different fermentation times (0, 3, 7, 15, and 30 days). CS has high nutritive value, including crude protein and sugar, and can serve as a carbon source and a nitrogen source for silage fermentation. After ensiling, CS silage (CSTS) exhibited excellent fermentation quality, characterized by relatively high lactic acid content, low pH, and ammonia nitrogen content within an acceptable range. In addition, neither propionic acid nor butyric acid was detected in any of the silages. CS exhibited high α-diversity, with Serratia marcescens being the dominant bacterial species. After ensiling, the α-diversity significantly (p < 0.05) decreased, and Lactiplantibacillus plantarum was the dominant species during the fermentation process. With the extension of fermentation days, the relative abundance of Lactiplantibacillus plantarum significantly (p < 0.05) increased, reaching a peak and stabilizing between 15 and 30 days. Ultimately, lactic acid bacteria dominated and constructed a microbial symbiotic network system. In the bacterial community of CSTS, the abundance of “potential pathogens” was significantly (p < 0.01) lower than that of CS. These results provide data support for establishing a microbial regulation theory for silage fermentation, thereby improving the basic research system for the biological conversion of agricultural by-products and alleviating feed shortages in dry seasons. Full article

Aquatic plants, as sedentary lifestyle organisms that accumulate chemical substances from their surroundings, can serve as valuable indicators of long-term anthropogenic pressure. In Poland, water monitoring is limited both spatially and temporally, which hampers a comprehensive assessment of water quality. Since the implementation of the Water Framework Directive (WFD), biotic elements, including macrophytes, have played an increasingly important role in water monitoring. Moreover, running waters, due to their dynamic nature, are susceptible to episodic pollution inputs that may be difficult to detect during isolated, point-in-time sampling campaigns. The analysis of stable carbon (δ¹³C) and nitrogen (δ¹⁵N) isotope signatures in macrophytes enables the identification of elemental sources, including potential pollutants. Research conducted between 2008 and 2011 encompassed 38 sites along 15 rivers and 108 sites across 21 lakes in northern Poland. This study focused on the isotope signatures of three pondweed species: Stuckenia pectinata, Potamogeton perfoliatus, and Potamogeton crispus. The results revealed statistically significant differences in the δ¹³C and δ¹⁵N values of plant organic matter between river and lake environments. Higher δ¹⁵N values were observed in rivers, whereas higher δ¹³C values were recorded in lakes. Spearman correlation analysis showed a negative relationship between δ¹³C and δ¹⁵N, as well as correlations between δ¹⁵N and the concentrations of Ca²⁺ and HCO₃⁻. A positive correlation was also found between δ¹³C and dissolved oxygen levels. These findings confirm the utility of δ¹³C and, in particular, δ¹⁵N as indicators of anthropogenic eutrophication, including potentially domestic sewage input and its impact on aquatic ecosystems. Full article

Volcanic ash from explosive eruptions can significantly alter lake water chemistry through ash–water interactions, potentially influencing primary productivity. Alkaline (soda) lakes, mostly found in volcanic regions, are particularly sensitive due to their unique geochemical properties. However, the effects of volcanic ash on the biogeochemistry and phytoplankton dynamics of soda lakes remain poorly understood. This study presents the first nutrient release experiments using natural alkaline water from Lake Van (Türkiye) and volcanic ash from four volcanoes (Hekla, Arenal, Sakurajima, Rabaul-Tavurvur) with different compositions. Sixteen abiotic leaching experiments were conducted over contact durations ranging from 1 to 24 h. Results show rapid increases in pH (~0.4–0.5 units), enhanced silica and phosphate concentrations, and elevated levels of Na, K, Ca, Sr, and S. Nitrate and Mg were generally depleted. The low N:P ratio (~0.06) in Lake Van water indicated nitrogen limitation, partially mitigated by ash-derived inputs. Cyanobacteria dominated the phytoplankton community (95%), consistent with nitrogen fixation under low-nitrate conditions. Elevated silica may promote diatom growth, while changes in Mg/Ca ratios suggest possible impacts on carbonate precipitation and microbialite development. These findings highlight the biogeochemical and ecological relevance of volcanic ash inputs to soda lakes. Full article

The dynamic phosphorylation of the human RNA Pol II CTD establishes a code applicable to all eukaryotic transcription processes. However, the ability of these specific post-translational modifications to convey molecular signals through structural changes remains unclear. We previously explained that each gene can be modeled as a combination of n circuits connected in parallel. RNA Pol II accesses these circuits and, through a series of pulses, matches the resonance frequency of the DNA qubits, enabling it to extract genetic information and quantum teleport it. Negatively charged phosphates react under RNA Pol II catalysis, which increases the electron density on the deoxyribose acceptor carbon (2’C in the DNA sugar backbone). The phosphorylation effect on the stability of a carbon radical connects tyrosine to the nitrogenous base, while the subsequent pulses link the protein to molecular water through hydrogen bonds. The selective activation of inert C(sp³)–H bonds begins by reading the quantum information stored in the nitrogenous bases. The coupling of hydrogen proton transfer with electron transfer in water generates a supercurrent, which is explained by the correlation of pairs of the same type of fermions exchanging a boson. All these changes lead to the formation of a molecular protein–DNA–water transcriptional condensate. Full article

Qingke (Hordeum vulgare L. var. nudum Hook. f.), a staple crop in the Tibetan Plateau, suffers from severe yield reduction under continuous cropping (by 38.67%), yet the underlying mechanisms remain unclear. This study systematically investigated the effects of 23-year continuous cropping (23y-CC) on the nutrient dynamics, carbohydrate metabolism, and enzymatic activities in Qingke leaves across five developmental stages (T1: seedling; T2: tillering; T3: jointing; T4: flowering; T5: filling). Compared to the control (first-year planting), 23y-CC significantly reduced leaf nitrogen (N), phosphorus (P), and potassium (K) contents by 60.94%, 47.96%, and 60.82%, respectively, at early growth stages. Key nitrogen-metabolizing enzymes, including glutamate synthase (GOGAT), glutamine synthase (GS), and nitrate reductase (NR), exhibited reduced activities under 23y-CC, indicating impaired nitrogen assimilation. Carbohydrate profiling revealed lower starch and glucose contents but higher sucrose accumulation in later stages (T4–T5) under 23y-CC, accompanied by the dysregulation of sucrose synthase (SS) and invertase activities. These findings elucidate how continuous cropping disrupts nutrient homeostasis and carbon allocation, ultimately compromising Qingke productivity. This study provides novel insights into agronomic strategies for mitigating continuous cropping obstacles in Qingke. Full article

Straw mulching is an important strategy for regulating soil moisture, nutrient availability, and thermal conditions in agricultural systems. However, the mechanisms by which the mulching period, thickness, and planting density interact to influence yield formation in wheat–soybean rotation systems remain insufficiently understood. In this study, we systematically examined the combined effects of straw mulching at the seedling and jointing stages of winter wheat, as well as varying mulching thicknesses and soybean planting densities, on soil properties and crop yields through field experiments. The experimental design included straw mulching treatments during the seedling stage (T₁) and the jointing stage (T₂) of winter wheat, with soybean planting densities classified as low (D₁, 1.8 × 10⁵ plants·ha⁻¹) and high (D₂, 3.6 × 10⁵ plants·ha⁻¹). Mulching thicknesses were set at low (S₁, 2830.19 kg·ha⁻¹), medium (S₂, 8490.57 kg·ha⁻¹), and high (S₃, 14,150.95 kg·ha⁻¹), in addition to a no-mulch control (CK) for each treatment. The results demonstrated that (1) straw mulching significantly increased soil water content in the order S₃ > S₂ > S₁ > CK and exerted a temperature-buffering effect. This resulted in increases in soil organic carbon, available phosphorus, and available potassium by 1.88−71.95%, 1.36−165.8%, and 1.92−36.34%, respectively, while decreasing available nitrogen content by 1.42−17.98%. (2) The T₁ treatments increased wheat yields by 1.22% compared to the control, while the T₂ treatments resulted in a 23.83% yield increase. Soybean yields increased by 23.99% under D₁ and by 36.22% under D₂ treatments. (3) Structural equation modeling indicated that straw mulching influenced yields by modifying interactions among soil organic carbon, available nitrogen, available phosphorus, available potassium, bulk density, soil temperature, and soil water content. Wheat yields were primarily regulated by the synergistic effects of soil temperature, water content, and available potassium, whereas soybean yields were determined by the dynamic balance between organic carbon and available potassium. This study provides empirical evidence to inform the optimization of straw return practices in wheat–soybean rotation systems. Full article

Inselbergs are rocky outcrops with specialized vegetation, including woody species growing in poorly developed soils. We investigated whether populations of the lithophytic tree Pseudobombax petropolitanum A. Robyns (Malvaceae), a key species endemic to Atlantic Forest inselbergs, have convergent or divergent patterns of functional traits related to leaf chemistry. This study was carried out on three inselbergs located in southeastern Brazil. Green and senescent leaves from nine healthy trees and soil samples were collected in each inselberg. The carbon, nitrogen, phosphorus, potassium, calcium, and magnesium concentrations, and the natural abundances of δ¹³C and δ¹⁵N, were measured in leaves and soil, and the C/N, C/P, and N/P ratios were calculated. The specific leaf area (SLA) was measured, and the nutrient retranslocation rate between green and senescent leaves was estimated. Divergences between populations were observed in the concentrations of potassium and magnesium in the green and senescent leaves, as well as in the C/P and N/P ratios in senescent leaves. Our results suggest that nutrient and water dynamics may differ in some inselbergs due to specific nutrients or their relationships, even though there were convergences in most functional traits related to leaf chemistry among the Pseudobombax populations. The divergences among the populations could have important implications for species selection in the ecological restoration context. Full article

The response of plants to elevated atmospheric [CO₂] is highly dynamic and influenced by developmental stage, yet its role in photosynthetic acclimation remains underexplored. This study examines the physiological and molecular responses of wheat (Triticum durum, var. Amilcar) to elevated [CO₂] (700 ppm vs. 400 ppm) at two distinct developmental stages: the vegetative stage at the end of the elongation stage and the reproductive stage at the beginning of ear emergence (Z39 and Z51, respectively). Wheat plants at the developmental stage Z39, cultivated under elevated [CO₂], maintained photosynthetic rates despite a carbohydrate build-up. However, at Z51, photosynthetic acclimation became more evident as the decline in Rubisco carboxylation capacity (Vc_max) persisted, but also stomatal conductance and diffusion were decreased. This was accompanied by the up-regulation of the CA1 and CA2 genes, likely as a compensatory mechanism to maintain CO₂ supply. Additionally, hormonal adjustments under elevated [CO₂], including increased auxin and bioactive cytokinins (zeatin and isopentenyl adenine), may have contributed to delayed senescence and nitrogen remobilization, sustaining carbon assimilation despite biochemical constraints. These findings highlight the developmental regulation of photosynthetic acclimation, emphasizing the need for the stage-specific assessments of crop responses to future atmospheric conditions. Full article

We present a theoretical model of the hydrogenation and amination of a primal carbon cluster of the tangled polycyclic type. Hydrogen atoms were introduced via H₂, while the nitrogen source was NH₃. The initial chemical processes were modeled using Born–Oppenheimer Molecular Dynamics. Metadynamics was employed to accelerate the saturation. The reactions were characterized in terms of barriers, topology, and intricate changes in the electronic structure. All transition states were identified. Multiple mechanisms for each type of reaction were discovered. Occasional unbiased changes in the carbon skeleton, induced by the guided processes, were observed. The initial addition reactions had no barriers due to the instability and high reactivity of the carbon structure. The final product of barrierless hydrogen saturation was C₂₅H₂₆. This molecule included multiple isolated double bonds, a medium-sized conjugated π system, and no triple bonds. Ammonia additions resulted in quaternary ammonium groups and primary amino groups. In the subsequent amination, a barrier appeared in fewer steps than in repetitive hydrogenation. The final product of barrierless saturation with NH₃ was C₂₅H₂(NH₃)₂NH₂. Further amination was characterized by a forward free-energy barrier of an order of magnitude larger than the reverse reaction, and the product was found to be unstable. Full article

Background: Huang Qin Decoction (HQD) is a well-established Traditional Chinese Medicine (TCM) formulation recognized for its application in the treatment of colorectal cancer (CRC). However, the precise therapeutic mechanisms remain inadequately defined. Methods: This study integrates metabolomics from a mouse model and network pharmacology to screen potential targets and bio-active ingredients of HQD. The pharmacological activity of HQD for CRC was evidenced via single-cell RNA sequencing (scRNA-seq), molecular docking, and molecular dynamics simulations. Atomic force microscopy (AFM) assays and cellular experimental validation were used to confirm the relative mechanisms. Results: The metabolite profile undergoes significant alterations, with metabolic reprogramming evident during the malignant progression of CRC liver metastasis. Network pharmacology analysis identified that HQD regulates several metabolic pathways, including arginine biosynthesis, alanine, aspartate, and glutamate metabolism, nitrogen metabolism, phenylalanine metabolism, and linoleic acid metabolism, by targeting key proteins such as aspartate aminotransferase (GOT1), cytochrome P450 1A2 (CYP1A2), and carbonic anhydrase 2 (CA2). ScRNA-seq analysis indicated that HQD may enhance the functionality of cytotoxic T cells, thereby reversing the immunosuppressive microenvironment. Virtual verification revealed a strong binding affinity between the identified hub targets and active constituents of HQD, a finding subsequently corroborated by AFM assays. Cellular experiments confirmed that naringenin treatment inhibits the proliferation, migration, and invasion of CRC cells by downregulating GOT1 expression and disrupting glutamine metabolism. Conclusions: Computational prediction and in vitro validation reveal the active ingredients, potential targets, and molecular mechanisms of HQD against CRC liver metastasis, thereby providing a scientific foundation for the application of TCM in CRC treatment. Full article