Search Results (2,000)

The introduction of living mulches into an orchard can be considered an agroecological practice that can provide several ecosystem services related to integrated crop protection, also in relation to the impact on soil microbiome. In this study, the introduction in an organic apple orchard of two plant mixtures designed as multifunctional living mulches to reduce weed competition and increase shelter for beneficial arthropods was evaluated in relation to their impact on soil nutrient content and bacterial activity indices. One mixture was composed of Trifolium repens (20%) and Festuca ovina (80%), the second made of 40 different plant species including legumes, flowering species and grasses. Both living mulches increased N-nitrate levels in spring, and the two-component plant mixture was also able to improve P and K levels in soil at the same time, in comparison to the natural cover (control). The two mixtures induced an increase in bacterial activity in the beginning (40 plant species mix) or middle of the growing season (two-component plant mix), without major effects on bacterial biodiversity at the phyla level, showing a high share of Proteobacteria and Actinobacteriota among treatments. Nevertheless, both plant mixtures modified the phenotypic profile of the bacterial population, measured with the Biolog method, of different classes of C sources including carbohydrates, amino acids and carboxylic acid. The results are pointing to possible benefits of the practice on soil microbial activity, which will have to be confirmed by longer studies. Full article

Continuous cropping can often deteriorate soil quality and reduce crop yield. Soil properties and microbial communities usually play a vital role in maintaining rhizosphere micro-ecosystem sustainability, which is yet to be addressed in continuous peony monoculture systems. Herein, variations in soil physiochemical properties were extensively investigated following 1, 4, and 10 years of continuous tree peony cropping, as well as microbial community diversity, composition, and predicted functions. The soil pH and contents of available Mg, Mn, Zn, and B significantly declined after 10 years of continuous monoculture, while the contents of soil organic carbon, nitrate, and available P, K, Fe, and Cu notably increased by more than 100%, implying an imbalance of soil nutrients resulting from long-term continuous cropping. High-throughput sequencing results indicated that the microbial community structure and composition were remarkably altered after either 4 or 10 years of continuous cropping, interfering with diverse microbial metabolic pathways and phenotype functions. In addition, the relative abundances of some beneficial bacteria dramatically increased, especially for Acidobacteriota and Bacillus members. Microbial selections or adaptations in response to soil nutrient changes were expected to remediate negative impacts of continuous cropping on soil quality. Findings in this study provide insights into the establishment of proper management strategies for sustaining soil quality to resist potential obstacles after long-term continuous peony cropping. Full article

Yellow leaf disease (YLD) has been the most severe disease threatening areca palm, commonly known in areca palm cultivation. However, it has not yet been systematically studied in terms of the relationship between infected plants and the structure of rhizosphere microbial communities. In order to systematically study the impact of YLD on the rhizosphere fungi of the areca palm, we implemented high-throughput sequencing technology to analyze the microbial community structure and diversity under different disease conditions. The results indicate that as the severity of the disease increases, the diversity of the fungal community diminishes, with species abundance and richness initially decreasing before subsequently increasing, while phylogenetic diversity increases, and significant changes occur in the structure of the soil fungal community. At the phylum level, the dominant fungal phyla in the rhizosphere of areca palm are Ascomycota and Basidiomycota. At the genus level, the dominant genera are Sarocladium, Roussoella, Penicillium, etc., and their relative abundance increases with the severity of the disease. LEfSe analysis revealed that Archaeorhizomyces, Codinaea, and Albifimbria serve as indicator species for healthy areca palms, with their relative abundance trends consistent with changes in Alpha diversity. FUNGuild prediction results indicated that the fungal nutrient type structures of the three rhizosphere samples were highly similar, with saprotrophs being the absolutely dominant type. With the increase in the severity of the disease, the number of harmful fungi in the soil (such as Plectosphaerella, Fusarium, etc.) increases, thereby limiting the sustainable development of the soil. Network analysis indicates that beneficial microbial communities such as Stachybotrys and Roussoella exhibit extensive negative interactions. Therefore, the YLD of areca palm significantly alters the structure and diversity of the rhizosphere fungal community. Simultaneously, some beneficial microorganisms may be recruited by the areca rhizosphere to resist the invasion of YLD by improving the rhizosphere environment and enhancing plant immunity, such as Trechispora, Saitozyma, and Marasmiellus. This experiment is expected to provide a theoretical basis for the study of the rhizosphere microecology of the areca palm, the exploration of excellent biocontrol resources, and the green control of YLD in the areca palm. Full article

Olive pomace (OP), an olive mill byproduct, poses environmental risks if mismanaged due to its high phenolic content, acidic pH, organic load, and electrical conductivity. This study evaluated the impact of olive pomace filtrate (OPF) at varying doses (OP-5, OP-10, OP-15) on broad bean (Vicia faba L.) growth, secondary metabolites, and nutrient accumulation. The highest OPF dose (OP-15) exhibited a clear negative, dose-dependent phytotoxic effect, causing stem discoloration, reduced root growth, necrosis, and chlorosis, while untreated controls showed vigorous growth. This significantly (p < 0.05) reduced leaf development, average number of leaves, and total leaf area, even at the lowest concentration (5%). Consequently, OP-15 reduced dry and fresh biomass by over 50% and shoot/root lengths by up to 61.55% compared to the control. Liquid chromatography mass spectrometry (LC-MS/MS) analysis revealed a positive dose-dependent effect of OPF on beneficial phenol and flavonoid accumulation, with significantly higher amounts of ferulic, isoferulic, caffeic, chlorogenic, and 4-hydroxybenzoic acids, as well as luteolin-4′-rutinoside and 4,7-dihydroxyflavone. OP application significantly (p < 0.05) decreased relative water content and increased electrolyte leakage and malondialdehyde, indicating stress. Furthermore, OP decreased the uptake of K, P, Fe, S, Zn, and Cu. Therefore, the intrinsic phytotoxicity of OPF suggests that mitigation measures are essential before considering environmental application to prevent potential adverse effects on sensitive crops and the wider ecosystem. Full article

Biochar is increasingly recognized as a multifunctional soil amendment that improves soil fertility, nutrient cycling, and crop productivity. Studies across field, greenhouse, and incubation settings show that biochar enhances nutrient retention, reduces leaching, and regulates carbon, nitrogen, and phosphorus cycling. Its effects are shaped by intrinsic physicochemical properties and interactions with soil minerals, microbial communities, and enzymatic processes. Short-term benefits of biochar applications often include improved nutrient adsorption and water regulation, while long-term applications support stable soil organic matter formation, root development, and fertilizer use efficiency. Biochar also reshapes soil microbial diversity and activity. Beneficial bacterial groups such as Proteobacteria and Actinobacteria, along with fungi such as Mortierella, respond positively, enhancing nitrogen fixation, phosphorus solubilization, and organic matter decomposition. Meanwhile, biochar applications could suppress pathogens. Enzyme activities, including urease and phosphatase, are typically stimulated, driving nutrient mobilization. Yet outcomes remain context-dependent, with biochar feedstock, application rate, soil conditions, and crop type influencing results; excessive use may suppress enzymatic activity, reduce nutrient availability, or shift microbial communities unfavorably. Practically, biochar can improve fertilizer efficiency, restore degraded soils, and reduce greenhouse gas emissions, contributing to climate-smart agriculture. Future work should prioritize long-term, multi-site trials and advanced analytical tools to refine sustainable application strategies. Full article

Reducing dietary crude protein (CP) while sustaining growth performance and minimizing nitrogen emissions is a critical challenge in swine production. Beyond growth efficiency, the influence of low-protein diets (LPDs) on meat quality traits, gut microbiota, and systemic metabolism in finishing pigs remains insufficiently understood. In this study, 180 healthy crossbred finishing pigs (Duroc × Liangguang Small Spotted; initial body weight 85.49 ± 4.90 kg) were assigned to three dietary regimens for 35 days (six replicate pens per treatment, ten pigs per pen, male/female = 1:1): Control (CON, 15.5% CP), Low-Protein 1 (LP1, 14.5% CP), and Low-Protein 2 (LP2, 13.5% CP). Growth performance and nutrient digestibility were not impaired by protein reduction. Notably, LP1 pigs exhibited thicker backfat (p < 0.05), while LP2 pigs showed decreased concentrations of specific fatty acids (C12:0–C22:1n9) and essential amino acids (aspartic acid, glutamic acid, lysine) compared with LP1 (p < 0.05), indicating that dietary protein levels affected muscle composition. Cecal microbiota analysis revealed distinct shifts, with Prevotella spp., Faecalibacterium spp., and Plesiomonas spp. enriched in CON, whereas LP1 promoted Eubacteriaceae spp., Christensenellaceae spp., and Clostridia spp. (p < 0.05). Serum metabolomics further distinguished groups: LP1 reduced bile secretion and cholesterol metabolism pathways (p < 0.05) and LP2 further suppressed cholesterol metabolism and primary bile acid biosynthesis (p < 0.05), with a trend toward reduced phenylalanine metabolism (p = 0.07). Collectively, these findings demonstrate that moderate dietary protein reduction, when balanced with essential amino acids, maintains growth, reduces nitrogen output, and beneficially alters muscle composition, gut microbiota, and host metabolic pathways, offering nutritional strategies to enhance pork quality and promote sustainable pig production. Full article

Diet influences brain health through many connected metabolic and molecular pathways, and these effects are stronger in obesity. This review links diet quality with cognitive decline and dementia risk. Ultra-processed, high-fat, high-sugar diets drive weight gain, insulin resistance, and chronic inflammation. These changes trigger brain oxidative stress, reduce DNA repair, deplete NAD⁺, disturb sirtuin/PARP balance, and alter epigenetic marks. Gut dysbiosis and leaky gut add inflammatory signals, weaken the blood–brain barrier, and disrupt microglia. Mediterranean and MIND diets, rich in plants, fiber, polyphenols, and omega-3 fats, slow cognitive decline and lower dementia risk. Trials show extra benefit when diet improves alongside exercise and vascular risk control. Specific nutrients can help in certain settings. DHA and EPA support brain health in people with low omega-3 status or early disease. B-vitamins slow brain shrinkage in mild cognitive impairment when homocysteine is high. Vitamin D correction is beneficial when levels are low. A practical plan emphasizes healthy eating and good metabolic control. It includes screening for deficiencies and supporting the microbiome with fiber and fermented foods. Mechanism-based add-ons, such as NAD⁺ boosters, deserve testing in lifestyle-focused trials. Together, these measures may reduce diet-related brain risk across the life span. At the same time, artificial intelligence can integrate diet exposures, adiposity, metabolic markers, multi-omics, neuroimaging, and digital phenotyping. This can identify high-risk phenotypes, refine causal links along the diet–obesity–brain axis, and personalize nutrition-plus-lifestyle interventions. It can also highlight safety, equity, and privacy considerations. Translationally, a pattern-first strategy can support early screening and personalized risk reduction by integrating diet quality, adiposity, vascular risk, micronutrient status, and microbiome-responsive behaviors. AI can aid measurement and risk stratification when developed with privacy, equity, and interpretability safeguards, but clinical decisions should remain mechanism-aligned and trial-anchored. Full article

Soil salinity poses a critical threat to global agricultural productivity, exacerbating food security challenges in arid and semi-arid regions. This review synthesizes current knowledge on the physiological and biochemical impacts of salinity stress in plants, with a focus on the role of gibberellic acid (GA₃) in mitigating these effects. Salinity disrupts ion homeostasis, induces osmotic stress, and generates reactive oxygen species (ROS), leading to reduced chlorophyll content, impaired photosynthesis, and stunted growth across all developmental stages, i.e., from seed germination to flowering. Excess sodium (Na⁺) and chloride (Cl⁻) accumulation disrupts nutrient uptake, destabilizes membranes, and inhibits enzymes critical for carbon fixation, such as Rubisco. GA₃ emerges as a key regulator of salinity resilience, enhancing stress tolerance through various mechanisms like scavenging ROS, stabilizing photosynthetic machinery, modulating stomatal conductance, and promoting osmotic adjustment via osmolyte accumulation (e.g., proline). Plant hormone’s interaction with DELLA proteins and cross-talk with abscisic acid, ethylene, and calcium signaling pathways further fine-tune stress responses. However, gaps persist in understanding GA₃-mediated floral induction under salinity and its precise role in restoring photosynthetic efficiency. While exogenous GA₃ application improves growth parameters, its efficacy depends on the concentration- and species-dependent, with lower doses often proving beneficial and optimum doses potentially inhibitory. Field validation of lab-based findings is critical, given variations in soil chemistry and irrigation practices. Future research must integrate biotechnological tools (CRISPR, transcriptomics) to unravel GA₃ signaling networks, optimize delivery methods, and develop climate-resilient crops. This review underscores the urgency of interdisciplinary approaches to harness GA₃’s potential in sustainable salinity management, ensuring food security and safety in the rapidly salinizing world. Full article

Progressive urbanization and increasing pressure on urban green areas necessitate the search for innovative, ecological, and efficient solutions for lawn management. The shallow root system of grasses, combined with a long vegetation period, makes these plants particularly sensitive to water and nutrient deficiencies. One research direction involves the use of zeolites, natural aluminosilicate minerals that, due to their porous structure and high sorption capacity, improve water retention and nutrient availability in soil. The aim of this study was to assess the effect of different zeolite doses on the initial growth and development of two turfgrass species (Lolium perenne, Festuca rubra), as well as on selected lawn performance traits, and to determine the persistence of these effects over time. This research was conducted in 2020–2023 under pot and micro-plot experiment conditions, using mixtures containing the above species. Four levels of zeolite addition to the substrate were applied: 0% (control), 1%, 5%, and 10%. The results clearly confirmed the beneficial effects of zeolite. Its addition improved the germination, growth, and biomass yield of aboveground parts and roots, as well as enhancing turf aesthetics, ground cover, and winter hardiness, while reducing the proportion of dicotyledonous species. The best effects were obtained with the 5% dose, which should be considered optimal—it significantly improved lawn utility parameters with lower material input compared to the 10% dose. Species response varied: L. perenne responded more strongly to improved water–air conditions, whereas F. rubra utilized higher zeolite doses more effectively in root system development. The highest overall effectiveness was recorded with the 10% dose. Zeolite effectiveness was greatest in the first year after application, showing a declining trend in subsequent years, although a positive effect was still observed in the third year of use. The findings support the recommendation of zeolite as an ecological soil additive that enhances lawn quality and durability, particularly in low-fertility soils and under water deficit conditions. Its application may represent an important component of modern green space management technologies in line with the principles of sustainable development. Full article

Triclocarban (TCC), a synthetic antimicrobial compound prevalent in personal care products, has emerged as a typical contaminant in aquatic ecosystems. Intestinal microbiota maintains the host’s health homeostasis by regulating nutrient metabolism and immunity and is regarded as a sensitive biomarker for the risk assessment of pollutants. Currently, there is still a lack of toxicity assessment of TCC on the intestinal microbiota homeostasis of shrimp. Therefore, this study employed 16S rDNA sequencing to explore intestinal microbiota perturbations in Penaeus monodon following subchronic exposure (14 days) to graded TCC concentrations (1 and 10 μg/L). The results showed that TCC exposure altered intestinal microbiota diversity, marked by increases in the ACE, Chao1, and Shannon indices and a decrease in the Simpson index; however, none of these changes reached statistical significance (p > 0.05). Furthermore, the community composition was also altered, characterized by a significant increase in Bacteroidetes and a significant decrease in Tenericutes (p < 0.05), alongside non-significant increases in Proteobacteria and decreases in Firmicutes (p > 0.05). The abundances of some putative beneficial bacterial genera (Alloprevotella, Bacteroidales S24-7 group_norank, Cetobacterium, Enterococcus and Lactobacillus) and harmful bacteria (Photobacterium and Aeromonas) were decreased (p > 0.05); the abundance of Vibrio was decreased in the T1 group but increased in the T10 group (p > 0.05). Additionally, the predicted functions of the intestinal microbiota, such as glycan biosynthesis and degradation, steroid and isoflavone biosynthesis, and nucleotide metabolism, were enhanced. These results indicated that TCC exposure had a negative effect on the homeostasis of the intestinal microbiota of P. monodon. Full article

Background/Objectives: People in the developed world tend to consume food that is rich in calories but lacks sufficient nutrients such as essential minerals, vitamins, and other health-promoting metabolites. At the same time, hunger and malnutrition are still problems in other countries. Therefore, various forms of micronutrient deficiencies and diseases caused by unbalanced nutrition are global issues. Methods: In order to elucidate the beneficial potential of alternative food sources, we employed state-of-the-art UHPLC-MS and ICP-MS technologies to perform comprehensive metabolome and metallome analyses of five edible European plants, some of which are known as underutilized crops: Achillea millefolium, Agastache rugosa, Cercis siliquastrum, Crithmum maritimum, and Mespilus germanica. Results: This study reveals valuable nutritional properties such as high levels of essential amino acids, sugars, organic acids, health-promoting secondary metabolites, and essential microelements that are important for human diet. The analyzed samples indicate that A. millefolium, C. siliquastrum, and M. germanica could be marked as a viable source of beneficial flavonoids. In turn, both leaves and fruits of A. rugosa had elevated abundances of organic acids, along with A. millefolium and C. siliquastrum. Similar results were observed for amino acids. Conclusions: Taken as a whole, the fruits of C. siliquastrum could be described as the best source for most of the identified compounds. The M. germanica samples were rich in mineral contents, with indications that they can supply 26% of the recommended daily intake per 100 g for K, 16% for Mg, 26% for Fe, 63% for Mn, and 89% for B. The leaves of C. maritimum and A. millefolium are also a good source of K and Mn. Interestingly, the sampled leaves of C. maritimum contained a very high amount of B, representing more than three times the reference nutrient value for 100 g of plant material. In conclusion, these underutilized species can be used to diversify the European food systems by enriching our diets with essential nutrients and health-promoting metabolites. Full article

Deep-sea mussels of the genus Bathymodiolus exhibit adaptability to nutrient-poor deep-sea environments by establishing nutritional intracellular symbiosis with chemosynthetic bacteria harbored within the gill epithelial cells. However, this poses a conflict for the innate immune system of the host, which must balance the tolerance of beneficial symbiotic bacteria with the need to eliminate exogenous microbes. This review synthesizes existing knowledge and recent findings on Bathymodiolus japonicus to outline the cellular and molecular mechanisms governing this symbiotic relationship. In the host immune system, hemocytes are responsible for systemic defense, whereas gill cells are involved in local symbiotic acceptance. Central to the establishment of symbiosis is the host’s phagocytic system, which non-selectively engulfs bacteria but selectively retains symbionts. We highlight a series of cellular events in gill cells involving the engulfment, selection, retention and/or digestion of symbionts, and the regulatory mechanism of phagocytosis through mechanistic target of rapamycin complex 1, which connects bacterial nutrient supply with host immune and metabolic responses. This integrated model of symbiosis regulation, which links immunity, metabolism, and symbiosis, provides a fundamental framework for understanding how hosts establish and maintain a stable coexistence with microbes, offering a new perspective on symbiotic strategies in diverse organisms. Full article

Heavy metal (HM) contamination in agricultural soils poses a significant threat to soil health and plant productivity. This study investigates the impact of cadmium (Cd) and zinc (Zn) stress on tomato plants (Solanum lycopersicum) and explores the mitigation potential of microbial biostimulants (MBs), including arbuscular mycorrhizal fungi (AMF) and Pseudomonas fluorescens So_08 (PGPR), over a 52-day period using multi-omics approaches. Root exudate profiling revealed distinct metabolic changes under HM stress, which compromised soil–plant interactions. Cd stress reduced the secretion of phenylpropanoids (sum LogFC: −45.18), lipids (sum LogFC: −27.67), and isoprenoids (sum LogFC: −11–67), key metabolites in antioxidative defense, while also suppressing rhizosphere fungal populations. Conversely, Zn stress enhanced lipid exudation (such as sphingolipids and sterols, as sum LogFC of 8.72 and 9.99, respectively) to maintain membrane integrity and reshaped rhizobacterial communities. The MBs application mitigated HM-induced stress by enhancing specialized metabolite syntheses, including cinnamic acids, terpenoids, and flavonoids, which promoted crop resilience. MBs also reshaped microbial diversity, fostering beneficial species like Portibacter spp., Alkalitalea saponilacus under Cd stress, and stimulating rhizobacteria like Aggregatilinea spp. under Zn stress. Specifically, under Cd stress, bacterial diversity remained relatively stable, suggesting their resilience to Cd. However, fungal communities exhibited greater sensitivity, with a decline in diversity in Cd-treated soils and partial recovery when MBs were applied. Conversely, Zn stress caused decline in bacterial α-diversity, while fungal diversity was maintained, indicating that Zn acts as an ecological filter that suppresses sensitive bacterial taxa and favors Zn-tolerant fungal species. Multi-omics data integration combined with network analysis highlighted key features associated with improved nutrient availability and reduced HM toxicity under MB treatments, including metabolites and microbial taxa linked to sulfur cycling, nitrogen metabolism, and iron reduction pathways. These findings demonstrate that MBs can modulate plant metabolic responses and restore rhizosphere microbial communities under Cd and Zn stress, with PGPR showing broader metabolomic recovery effects and AMF influencing specific metabolite pathways. This study provides new insights into plant–microbe interactions in HM-contaminated environments, supporting the potential application of biostimulants for sustainable soil remediation and plant health improvement. Full article

Long-term positioning tests can systematically reveal the evolution characteristics of soil fertility and crop productivity, and reflect the spatiotemporal changes in soil quality and their driving factors. While soil microorganisms mediating nutrient cycling are crucial for maintaining crop productivity and the long-term resilience of agricultural ecosystems, how prolonged use of different fertilization strategies affects their functional capacity remains insufficiently understood. In this study, we applied metagenomic sequencing to investigate how three fertilization treatments, namely (i) N0 receiving only phosphorus (P) and potassium (K) fertilizers, (ii) N250 receiving conventional urea + P and K, and (iii) F250 receiving humic acid urea + P and K, influence soil microbial communities, functional genes related to C and N cycling, and associated soil properties in a long-term field experiment. The F250 treatment significantly increased average annual yields of wheat and maize to 7166.21 kg hm⁻² and 8309.96 kg hm⁻², respectively. These values were 148.66% and 73.47% higher than those under N0, and 8.22% and 11.64% higher than those under N250. Compared with N0, both N250 and F250 signally augmented soil nitrate, ammonium, total nitrogen (TN), and soil organic carbon (SOC), altered microbial community composition, and enhanced the relative abundance of genes engaged in C fixation and methane oxidation. Both treatments also promoted denitrification and dissimilatory nitrate reduction to ammonium (DNRA). Relative to N250, F250 specifically enriched the beneficial bacterial genus Pedobacter, further increased the abundance of the C fixation gene pccA, and markedly upregulated the DNRA gene nrfA. Soil TN and SOC were identified as the key environmental factors regulating microbial community structure and the functional potential of C and N cycling pathways. Collectively, our findings provide a mechanistic understanding of how long-term application of humic acid urea enhances crop productivity by modulating the genetic potential of soil microorganisms in biogeochemical cycles, offering a biological foundation for optimizing fertilization strategies in sustainable agriculture. Full article

The integration of beneficial microorganisms with sensor technologies represents a transformative advancement toward sustainable smart agriculture. This review synthesizes recent progress in combining microbial bioinoculants with sensor-based monitoring systems to enhance crop productivity, resource-use efficiency, and environmental resilience. Beneficial bacteria and fungi improve nutrient cycling, stress tolerance, and soil fertility thereby reducing the reliance on chemical fertilizers and pesticides. In parallel, sensor networks—including soil moisture, nutrient, environmental, and remote-sensing platforms—enable real-time, data-driven management of agroecosystems. Integrated microbe–sensor approaches have demonstrated 10–25% yield increases and up to 30% reductions in agrochemical inputs under optimized field conditions. We propose an integrative Microbe–Sensor Closed Loop (MSCL) framework in which microbial activity and sensor feedback interact dynamically to optimize inputs, monitor plant–soil interactions, and sustain productivity. Key applications include precision fertilization, stress diagnostics, and early detection of nutrient or pathogen imbalances. The review also highlights barriers to large-scale adoption, such as variable field performance of inoculants, high sensor costs, and limited interoperability of data systems. Addressing these challenges through standardization, cross-disciplinary collaboration, and farmer training will accelerate the transition toward climate-smart, self-regulating agricultural systems. Collectively, the integration of biological and technological innovations provides a clear pathway toward resilient, resource-efficient, and ecologically sound food production. Full article