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Keywords = atropisomerism

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33 pages, 2757 KB  
Review
Bridging Two Worlds: Structural and Pharmacological Aspects of Natural Triterpenoid Dimers: Pristimerin-Pristimerin-Type Dimers
by Andrzej Günther and Barbara Bednarczyk-Cwynar
Molecules 2026, 31(9), 1386; https://doi.org/10.3390/molecules31091386 - 23 Apr 2026
Viewed by 886
Abstract
This review summarizes current knowledge on naturally occurring pristimerin-pristimerin triterpenoid dimers, a rare and structurally diverse class of secondary metabolites reported mainly from Celastraceae species. Known dimers are compiled with emphasis on botanical sources and key architectural features, including the variety of interunit [...] Read more.
This review summarizes current knowledge on naturally occurring pristimerin-pristimerin triterpenoid dimers, a rare and structurally diverse class of secondary metabolites reported mainly from Celastraceae species. Known dimers are compiled with emphasis on botanical sources and key architectural features, including the variety of interunit linkages, regio- and stereochemical diversity, and distinct isomeric forms (including atropisomerism). Major advances in structure elucidation and structural revisions are discussed, highlighting the role of modern spectroscopic tools—particularly 2D NMR methods and chiroptical techniques—in resolving connectivity and absolute configuration, and in correcting several earlier assignments. Proposed biosynthetic scenarios are outlined, focusing on the reactivity of the quinone-methide motif and its interconversion with 2,3-diketone forms, as well as (hetero) Diels-Alder-type processes; selected biomimetic studies are summarized as supportive evidence for these pathways. A critical overview of available biological data indicates that many pristimerin dimers display limited activity in common antimicrobial and cytotoxicity assays when compared with monomeric congeners, which may point to alternative ecological roles or storage/transport functions in planta. Finally, key knowledge gaps and future directions are identified, including improved isolation coverage, rigorous synthetic/biomimetic work, and broader pharmacological screening beyond standard panels. Full article
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15 pages, 762 KB  
Article
Acetylenic Fatty Acids and Stilbene Glycosides Isolated from Santalum yasi Collected from the Fiji Islands
by Khalid Al Maqbali, Miriama Vuiyasawa, Mercy Ayinya Gube-Ibrahim, Shubham Sewariya, Clément Balat, Kirsti Helland, Tamar Garcia-Sorribes, Mercedes de la Cruz, Bastien Cautain, Jeanette Hammer Andersen, Fernando Reyes and Jioji N. Tabudravu
Molecules 2025, 30(24), 4752; https://doi.org/10.3390/molecules30244752 - 12 Dec 2025
Viewed by 800
Abstract
In our continuing search for new anticancer and/or antimicrobial compounds from natural products, we screened for these activities in bark and leaf extracts of sandalwood plants collected from the Fiji Islands and found Santalum yasi to be the most active. Resulting chemical workup [...] Read more.
In our continuing search for new anticancer and/or antimicrobial compounds from natural products, we screened for these activities in bark and leaf extracts of sandalwood plants collected from the Fiji Islands and found Santalum yasi to be the most active. Resulting chemical workup enabled the isolation and structural characterization of a new acetylenic acid, methyl (E)-octadec-6-en-8-ynoate (1), and an atropisomeric stilbene glycoside (4) (Yasibeneoside) together with six known compounds: 11,13-octadecadien-9-ynoic acid (2), methyl octadeca-9,11-diynoate (3), gaylussacin (5) chrysin-7-beta-monoglucoside (6), neoschaftoside (7), and chrysin-6-C-glucoside-8-C-arabinoside (8). Compound 1 (18:2 (6t, 8a) is an example of a Δ6, Δ8 acetylenic system containing the trans double bond at C-6 and the triple bond at C-8, which is reported here for the first time. All molecular structure elucidations and dereplications were performed using spectroscopic techniques, including 2D NMR and HRMS-MS/MS spectrometry. Methyl (E)-octadec-6-en-8-ynoate showed moderate activity activity with an IC50 of 91.2 ug/mL against the human breast adenocarcinoma cell line MCF-7. Full article
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23 pages, 5961 KB  
Article
Bifunctional Azido(thio)ureas from an O-Protected 2-Amino-2-deoxy-d-glucopyranose: Synthesis and Structural Analyses
by Concepción Sosa-Gil, Esther Matamoros, Pedro Cintas and Juan C. Palacios
Molecules 2024, 29(23), 5687; https://doi.org/10.3390/molecules29235687 - 30 Nov 2024
Viewed by 1483
Abstract
This publication reports a facile and convenient preparation of tri-O-acetyl-glucopyranoses, derived from the corresponding 2-deoxyaminosugar, where the vicinal anomeric and C2 positions are decorated by azido and (thio)ureido groups, respectively. This double functionalization leads to an inherently chiral core incorporating the [...] Read more.
This publication reports a facile and convenient preparation of tri-O-acetyl-glucopyranoses, derived from the corresponding 2-deoxyaminosugar, where the vicinal anomeric and C2 positions are decorated by azido and (thio)ureido groups, respectively. This double functionalization leads to an inherently chiral core incorporating the versatile azido and (thio)ureido linkages prone to further manipulation. The latter also provides a structural element for hydrogen-bonded donor-acceptor (HB-DA) sites, which are of immense value in organocatalytic pursuits. A computation-aided conformational analysis unveils the landscape of available conformers and their relative stability. N-aryl (thio)ureas bearing substituents at ortho positions exist as mixtures of M- and P-atropisomeric conformers. Full article
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9 pages, 2040 KB  
Article
Total Synthesis of Talarolide A and atrop-Talarolide A: Hydroxamate H-Bond Bridge Stabilization of Cyclic Peptide Conformers Invokes Non-Canonical Atropisomerism
by Waleed M. Hussein, Yuxuan Zhu, Angela A. Salim and Robert J. Capon
Mar. Drugs 2024, 22(10), 454; https://doi.org/10.3390/md22100454 - 3 Oct 2024
Cited by 3 | Viewed by 2583
Abstract
The first total synthesis of the Australian marine tunicate fungus-derived cyclic peptide talarolide A (1) has confirmed the structure previously proposed on the basis of spectroscopic and chemical analyses and re-affirmed the importance of the unique hydroxamate H-bond bridge in ring [...] Read more.
The first total synthesis of the Australian marine tunicate fungus-derived cyclic peptide talarolide A (1) has confirmed the structure previously proposed on the basis of spectroscopic and chemical analyses and re-affirmed the importance of the unique hydroxamate H-bond bridge in ring conformer stabilization. The unexpected co-synthesis of atrop-talarolide A (8) revealed, for the first time, that hydroxamate H-bond bridging in the talarolide framework invokes non-canonical atropisomerism and that talarolides A (1), C (3), and D (4) all exist naturally as atropisomers. These discoveries raise the intriguing prospect that comparable functionalisation of other cyclic peptides, including those with commercial value, could provide ready access to new “unnatural atropisomeric” chemical space, with new and/or improved chemical and biological properties. Full article
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8 pages, 2531 KB  
Article
Atroposelective Formal [2 + 5] Macrocyclization Synthesis for a Novel All-Hydrocarbon Cyclo[7] Meta-Benzene Macrocycle
by Chao Gao, Hongchen Li, Jing Zhao, Lulu Bu, Mei Sun, Jingrui Wang, Gang Tao, Longde Wang, Li Li, Guilin Wen and Yunhu Hu
Molecules 2024, 29(14), 3363; https://doi.org/10.3390/molecules29143363 - 17 Jul 2024
Viewed by 1949
Abstract
A novel axially chiral all-hydrocarbon cyclo[7] (1,3-(4,6-dimethyl)benzene (CDMB-7) was designed and synthesized using atroposelective[2 + 5] cyclization through Suzuki–Miyaura coupling. CDMB-7 adopts an irregular bowl-like shape with C2 symmetry and exhibits two diastereoisomers in its crystallographic structure. The conformational isomers [...] Read more.
A novel axially chiral all-hydrocarbon cyclo[7] (1,3-(4,6-dimethyl)benzene (CDMB-7) was designed and synthesized using atroposelective[2 + 5] cyclization through Suzuki–Miyaura coupling. CDMB-7 adopts an irregular bowl-like shape with C2 symmetry and exhibits two diastereoisomers in its crystallographic structure. The conformational isomers of CDMB-7 racemates remain stable at high temperatures (393 K). High-performance liquid chromatography (HPLC) confirmed that a single chiral isomer will spontaneously undergo racemization within 30 min at room temperature. This finding opens up possibilities for achieving adaptive chirality in all-hydrocarbon cyclo[7] m-benzene macrocycles. Full article
(This article belongs to the Section Organic Chemistry)
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13 pages, 3676 KB  
Communication
C(sp)-C(sp) Lever-Based Targets of Orientational Chirality: Design and Asymmetric Synthesis
by Ting Xu, Jia-Yin Wang, Yu Wang, Shengzhou Jin, Yao Tang, Sai Zhang, Qingkai Yuan, Hao Liu, Wenxin Yan, Yinchun Jiao, Xiao-Liang Yang and Guigen Li
Molecules 2024, 29(10), 2274; https://doi.org/10.3390/molecules29102274 - 11 May 2024
Cited by 5 | Viewed by 2318
Abstract
In this study, the design and asymmetric synthesis of a series of chiral targets of orientational chirality were conducted by taking advantage of N-sulfinylimine-assisted nucleophilic addition and modified Sonogashira catalytic coupling systems. Orientational isomers were controlled completely using alkynyl/alkynyl levers [C(sp)-C(sp) axis] [...] Read more.
In this study, the design and asymmetric synthesis of a series of chiral targets of orientational chirality were conducted by taking advantage of N-sulfinylimine-assisted nucleophilic addition and modified Sonogashira catalytic coupling systems. Orientational isomers were controlled completely using alkynyl/alkynyl levers [C(sp)-C(sp) axis] with absolute configuration assignment determined by X-ray structural analysis. The key structural element of the resulting orientational chirality is uniquely characterized by remote through-space blocking. Forty examples of multi-step synthesis were performed, with modest to good yields and excellent orientational selectivity. Several chiral orientational amino targets are attached with scaffolds of natural and medicinal products, showing potential pharmaceutical and medical applications in the future. Full article
(This article belongs to the Section Organic Chemistry)
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16 pages, 4424 KB  
Article
Synthesis and Structure of Unsymmetrical Anthracenyl-Isoxazole Antitumor Agents Via the Diastereoselective Bromination of 3-(9′-Anthryl)-Isoxazole Esters
by Michael J. Campbell, Daniel A. Decato, Chun Li, Matthew J. Weaver and Nicholas R. Natale
Crystals 2024, 14(3), 256; https://doi.org/10.3390/cryst14030256 - 5 Mar 2024
Cited by 3 | Viewed by 2552
Abstract
In pursuit of unsymmetrical precursors for the novel series of anthracenyl-isoxazole amide (AIM) antitumor agents, a series of substituted anthracenes were subjected to bromination and re-aromatization in our study, during which we solved four single crystal X-ray diffractometry (Sc-xrd) structures which we report [...] Read more.
In pursuit of unsymmetrical precursors for the novel series of anthracenyl-isoxazole amide (AIM) antitumor agents, a series of substituted anthracenes were subjected to bromination and re-aromatization in our study, during which we solved four single crystal X-ray diffractometry (Sc-xrd) structures which we report herein. The C-9 nitrile oxide, after its reaction with bromine, was isolated, but when subjected to re-aromatization, it returned to the starting 10-bromo nitrile oxide 1, which did provide an accurate crystal structure, with R = 0.018. The 10-halogenated 3-(9’-anthryl)-isoxazole esters were subjected to bromination and re-aromatization. Surprisingly, the yields obtained in the presence of the isoxazole were reasonably good (62–68% isolated yields), and the major diastereomers allowed for the characterization using Sc-xrd. The penta bromo product 2 showed a trans, trans, cis relationship for the four bromines on the A-ring of the anthracene, and we observed that for the unit cell, the atropisomers displayed a 1:1 ratio at the chiral axis between the isoxazole and anthrancene rings. Similarly, the 10-chloro 3 indicated a ratio of 1:1 at the chiral axis in the crystal structure. A base-induced re-aromatization afforded 3,10-dihalogenated analogues selectively in very good yields (X = Cl, 89%; X = Br 92%), of which the dibromo 4 was characterized using Sc-xrd. The improved yields of the unique diastereomeric bromination products suggested the consideration of a novel electrophilic aromatic substitution mechanism driven by the stereo-electronic environment, imposed by the isoxazole ester substituent. The promise of the application of this chemistry in the future development of AIM antitumor agents is suggested. Full article
(This article belongs to the Special Issue Feature Papers in Biomolecular Crystals in 2022-2023)
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13 pages, 4304 KB  
Article
On the Nature of the Rotational Energy Barrier of Atropisomeric Hydrazides
by Andrea Pellegrini, Laura Marcon, Paolo Righi, Giovanni Centonze, Chiara Portolani, Marco Capodiferro, Shilashi Badasa Oljira, Simone Manetto, Alessia Ciogli and Giorgio Bencivenni
Molecules 2023, 28(23), 7856; https://doi.org/10.3390/molecules28237856 - 29 Nov 2023
Cited by 1 | Viewed by 4096
Abstract
N-N atropisomers represent a useful class of compounds that has recently received important attention from many research groups. This article presents an in-depth analysis of the energy barrier needed for the racemization process of atropoisomeric hydrazides, combining an experimental and computational approach. The [...] Read more.
N-N atropisomers represent a useful class of compounds that has recently received important attention from many research groups. This article presents an in-depth analysis of the energy barrier needed for the racemization process of atropoisomeric hydrazides, combining an experimental and computational approach. The focus is on examining how electronic and steric factors impact the racemization process. The results obtained indicate that the barrier observed during the racemization process mainly arises from an increase in the p-orbital character of the nitrogen atoms. Full article
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17 pages, 4108 KB  
Article
Diaryl-Pyrano-Chromenes Atropisomers: Stereodynamics and Conformational Studies
by Alessia Ciogli, Andrea Fochetti, Andrea Sorato, Giancarlo Fabrizi, Nunzio Matera, Andrea Mazzanti and Michele Mancinelli
Molecules 2023, 28(13), 4915; https://doi.org/10.3390/molecules28134915 - 22 Jun 2023
Viewed by 2312
Abstract
The dynamic scenario of di-aryls-pyrano-chromenes was investigated using DFT calculations. The symmetry of the chromene scaffold and the presence of two ortho-substituted aryls substituents can generate two syn/anti diastereoisomers and conformational enantiomers with different rotational barriers. The relative conformations and [...] Read more.
The dynamic scenario of di-aryls-pyrano-chromenes was investigated using DFT calculations. The symmetry of the chromene scaffold and the presence of two ortho-substituted aryls substituents can generate two syn/anti diastereoisomers and conformational enantiomers with different rotational barriers. The relative conformations and configurations were derived using NOESY-1D experiments. Depending on the energies related to the conformational exchange, the experimental energy barriers were determined through Dynamic NMR, Dynamic HPLC or kinetic studies. The atropisomeric pairs were resolved in the latter scenario, and their absolute configuration was assigned using the ECD/TD-DFT method. Full article
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35 pages, 50152 KB  
Review
Asymmetric Synthesis of Axially Chiral Molecules via Organocatalytic Cycloaddition and Cyclization Reactions
by Wei-Yun Cai, Qian-Ni Ding, Ling Zhou and Jie Chen
Molecules 2023, 28(11), 4306; https://doi.org/10.3390/molecules28114306 - 24 May 2023
Cited by 14 | Viewed by 6165
Abstract
Atropisomeric molecules are present in many natural products, biologically active compounds, chiral ligands and catalysts. Many elegant methodologies have been developed to access axially chiral molecules. Among them, organocatalytic cycloaddition and cyclization have attracted much attention because they have been widely used in [...] Read more.
Atropisomeric molecules are present in many natural products, biologically active compounds, chiral ligands and catalysts. Many elegant methodologies have been developed to access axially chiral molecules. Among them, organocatalytic cycloaddition and cyclization have attracted much attention because they have been widely used in the asymmetric synthesis of biaryl/heterobiaryls atropisomers via construction of carbo- and hetero-cycles. This strategy has undoubtedly become and will continue to be a hot topic in the field of asymmetric synthesis and catalysis. This review aims to highlight the recent advancements in this field of atropisomer synthesis by using different organocatalysts in cycloaddition and cyclization strategies. The construction of each atropisomer, its possible mechanism, the role of catalysts, and its potential applications are illustrated. Full article
(This article belongs to the Special Issue Synthesis and Application of Atropisomeric Molecules)
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21 pages, 4708 KB  
Article
Elagolix Sodium Salt and Its Synthetic Intermediates: A Spectroscopic, Crystallographic, and Conformational Study
by Samuele Ciceri, Diego Colombo, Enrico M. A. Fassi, Patrizia Ferraboschi, Giovanni Grazioso, Paride Grisenti, Marco Iannone, Carlo Castellano and Fiorella Meneghetti
Molecules 2023, 28(9), 3861; https://doi.org/10.3390/molecules28093861 - 3 May 2023
Cited by 2 | Viewed by 5457
Abstract
Elagolix sodium salt is the first marketed orally active non-peptide gonadotropin-releasing hormone receptor antagonist (GnRHR-ant) for the management of hormone dependent diseases, such as endometriosis and uterine fibroids. Despite its presence on the market since 2018, a thorough NMR analysis of this drug, [...] Read more.
Elagolix sodium salt is the first marketed orally active non-peptide gonadotropin-releasing hormone receptor antagonist (GnRHR-ant) for the management of hormone dependent diseases, such as endometriosis and uterine fibroids. Despite its presence on the market since 2018, a thorough NMR analysis of this drug, together with its synthetic intermediates, is still lacking. Hence, with the aim of filling this literature gap, we here performed a detailed NMR investigation, which allowed the complete assignment of the 1H, 13C, and 15N NMR signals. These data allowed, with the support of the conformational analysis, the determination of the stereochemical profile of the two atropisomers, detectable in solution. Moreover, these latter were also detected by means of cellulose-based chiral HPLC, starting from a sample prepared through an implemented synthetic procedure with respect to the reported ones. Overall, these results contribute to further understanding of the topic of atropisomerism in drug discovery and could be applied in the design of safe and stable analogs, endowed with improved target selectivity. Full article
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29 pages, 4389 KB  
Article
Atropostatin: Design and Total Synthesis of an Atropisomeric Lactone–Atorvastatin Prodrug
by Daniel Pecorari, Andrea Mazzanti and Michele Mancinelli
Molecules 2023, 28(7), 3176; https://doi.org/10.3390/molecules28073176 - 3 Apr 2023
Cited by 3 | Viewed by 4064
Abstract
Atorvastatins play an important role in the inhibition of HMG-CoA reductase, an enzyme present in the liver that takes part in the biosynthesis of cholesterol. In this article, we report the total synthesis of a lactone–atorvastatin prodrug with additional atropisomeric features. Conformational and [...] Read more.
Atorvastatins play an important role in the inhibition of HMG-CoA reductase, an enzyme present in the liver that takes part in the biosynthesis of cholesterol. In this article, we report the total synthesis of a lactone–atorvastatin prodrug with additional atropisomeric features. Conformational and experimental studies of model compounds were designed to test the stability of the chiral axis. Docking calculations were performed to evaluate the constant inhibition of a library of atorvastatins. Full synthesis of the best candidate was achieved and thermally stable atropisomeric lactone–atorvastatin was obtained. The absolute configuration of the chiral axis of the atropisomers was assigned by means of chiroptical ECD spectroscopy coupled with TD-DFT calculations. Full article
(This article belongs to the Special Issue Synthesis and Application of Atropisomeric Molecules)
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28 pages, 22579 KB  
Article
An Efficient Asymmetric Cross-Coupling Reaction in Aqueous Media Mediated by Chiral Chelating Mono Phosphane Atropisomeric Biaryl Ligand
by Katarzyna Kapłon, Sławomir Frynas, Barbara Mirosław, Janusz Lipkowski and Oleg M. Demchuk
Catalysts 2023, 13(2), 353; https://doi.org/10.3390/catal13020353 - 4 Feb 2023
Cited by 3 | Viewed by 3558
Abstract
The enantiomerically pure ligand BisNap-Phos was obtained in a straightforward sequence of reactions beginning with inexpensive starting materials under the readily affordable conditions in high overall yield. An asymmetric BisNap-Phos-palladium complex-catalyzed Suzuki–Miyaura coupling leading to axially chiral biaryl compounds was described. [...] Read more.
The enantiomerically pure ligand BisNap-Phos was obtained in a straightforward sequence of reactions beginning with inexpensive starting materials under the readily affordable conditions in high overall yield. An asymmetric BisNap-Phos-palladium complex-catalyzed Suzuki–Miyaura coupling leading to axially chiral biaryl compounds was described. The reactions were carried out under mild conditions in aqueous and organic media. A series of atropisomeric biaryls were synthesized with excellent yields and high enantioselectivities (up to 86% ee). The methodology provides an efficient and practical strategy for the synthesis of novel multifunctionalized axially chiral biaryl compounds under mild environmentally friendly and easily affordable conditions. Full article
(This article belongs to the Special Issue Feature Papers in Catalysis in Organic and Polymer Chemistry)
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10 pages, 1614 KB  
Article
A New C2-Symmetric Atropisomeric Thiophene-Based Monomer for Inherently Chiral Electroactive Materials: Synthesis, HPLC Resolution, and Absolute Configuration Assignment
by Alessia Rosetti, Giulio Apolloni, Claudio Villani, Tiziana Benincori and Roberto Cirilli
Appl. Sci. 2023, 13(3), 1407; https://doi.org/10.3390/app13031407 - 20 Jan 2023
Cited by 2 | Viewed by 2491
Abstract
Herein, we report on the synthesis and high-performance liquid chromatography (HPLC) resolution of a new atropisomeric C2-symmetry chiral monomer based on the 3,3′-bithiophene core, which was developed to produce novel, inherently oligomeric chiral electroactive materials. The analytical enantioseparation was optimized using [...] Read more.
Herein, we report on the synthesis and high-performance liquid chromatography (HPLC) resolution of a new atropisomeric C2-symmetry chiral monomer based on the 3,3′-bithiophene core, which was developed to produce novel, inherently oligomeric chiral electroactive materials. The analytical enantioseparation was optimized using the cellulose-type Chiralpak IB-3 column and a mixture of n-hexane–methanol–dichloromethane 90:5:5 (v/v/v) as the mobile phase. During the scale-up of the enantioseparation analytical conditions to a semipreparative level, remarkable deformations in the HPLC profile, such as peak splitting and plateau zones between enantiomeric peaks, were observed. We demonstrate the effects of sample diluent as they relate to distorted peak profiles, as well as provide experimental solutions to prevent the disturbing phenomenon. The optimized chromatographic conditions were exploited to collect milligram amounts of the enantiopure sample, which was submitted to chiroptical and stereochemical characterization studies. Full article
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9 pages, 1713 KB  
Short Note
5,5,7,7-Tetrametyl-6,7-dihydro-5H-dibenzo[c,e]azepine
by Roberto Bisaccia, Patrizia Scafato, Daniele Casarini and Stefano Superchi
Molbank 2023, 2023(1), M1554; https://doi.org/10.3390/M1554 - 16 Jan 2023
Cited by 1 | Viewed by 2150
Abstract
5,5,7,7-Tetrametyl-6,7-dihydro-5H-dibenzo[c,e]azepine has been synthesized as a possible pro-chiral (or tropos) unit for the construction of a chiral catalyst and as a molecular chirality sensor for the absolute configuration assignment by chiroptical spectroscopy. A straightforward synthetic strategy [...] Read more.
5,5,7,7-Tetrametyl-6,7-dihydro-5H-dibenzo[c,e]azepine has been synthesized as a possible pro-chiral (or tropos) unit for the construction of a chiral catalyst and as a molecular chirality sensor for the absolute configuration assignment by chiroptical spectroscopy. A straightforward synthetic strategy for the preparation of the title compound in high overall yield through sequential addition of the four methyl groups on benzylic positions has been described. A VT-NMR study was used to determine the rotational barrier of the aryl–aryl bond in this biphenylazepine, revealing its torsional flexibility at room temperature, which makes the biphenylazepine suitable as both a chirality probe and a tropos moiety in chiral ligands. Full article
(This article belongs to the Section Organic Synthesis and Biosynthesis)
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