Search Results (164)

The brown planthopper, Nilaparvata lugens (Stål, 1854), is the most devastating pest of rice (Oryza sativa L.). Although insecticides are used to control this pest, host plant resistance is a more effective and economic solution. Therefore, identification of N. lugens-resistant genes and elucidation of their underlying resistance mechanisms are critical for developing elite rice cultivars with enhanced and durable resistance. Research has shown that in the long-term evolutionary arms race, rice has developed complex defense systems against N. lugens, while N. lugens has developed diverse and sophisticated strategies to overcome the plant’s defenses. This review emphasizes recent advances in the molecular interactions between rice and the N. lugens, particularly focusing on the resistance mechanisms of 17 cloned major N. lugens resistance genes, which have significantly improved our understanding of the molecular basis of rice–N. lugens interactions. We also highlight the roles of several N. lugens salivary components in activating or suppressing rice defense responses. These insights provide a foundation for developing sustainable and effective strategies to manage this devastating pest of rice. Full article

Many vertebrates have evolved resistance to snake venom as a result of coevolutionary chemical arms races. In Australian skinks (family Scincidae), who often encounter venomous elapid snakes, the frequency, diversity, and molecular basis of venom resistance have been unexplored. This study investigated the evolution of neurotoxin resistance in Australian skinks, focusing on mutations in the muscle nicotinic acetylcholine receptor (nAChR) α1 subunit’s orthosteric site that prevent pathophysiological binding by α-neurotoxins. We sampled a broad taxonomic range of Australian skinks and sequenced the nAChR α1 subunit gene. Key resistance-conferring mutations at the toxin-binding site (N-glycosylation motifs, proline substitutions, arginine insertions, changes in the electrochemical state of the receptor, and novel cysteines) were identified and mapped onto the skink organismal phylogeny. Comparisons with other venom-resistant taxa (amphibians, mammals, and reptiles) were performed, and structural modelling and binding assays were used to evaluate the impact of these mutations. Multiple independent origins of α-neurotoxin resistance were found across diverse skink lineages. Thirteen lineages evolved at least one resistance motif and twelve additional motifs evolved within these lineages, for a total of twenty-five times of α-neurotoxic venoms resistance. These changes sterically or electrostatically inhibit neurotoxin binding. Convergent mutations at the orthosteric site include the introduction of N-linked glycosylation sites previously known from animals as diverse as cobras and mongooses. However, an arginine (R) substitution at position 187 was also shown to have evolved on multiple occasions in Australian skinks, a modification previously shown to be responsible for the Honey Badger’s iconic resistance to cobra venom. Functional testing confirmed this mode of resistance in skinks. Our findings reveal that venom resistance has evolved extensively and convergently in Australian skinks through repeated molecular adaptations of the nAChR in response to the enormous selection pressure exerted by elapid snakes subsequent to their arrival and continent-wide dispersal in Australia. These toxicological findings highlight a remarkable example of convergent evolution across vertebrates and provide insight into the adaptive significance of toxin resistance in snake–lizard ecological interactions. Full article

This study presents one of the most extensive analyses of the lifecycle of leaked authentication credentials to date, bridging the gap between database breaches and real-world cyberattacks. We analyze over 27 billion leaked credentials—nearly 4 billion unique—using a sophisticated data filtering and normalization pipeline to handle breach inconsistencies. Following this analysis, we deploy a distributed sensor network of 39 honeypots running 14 unique services across 9 networks over a one-year-long experiment, capturing one of the most comprehensive authentication datasets in the literature. We analyze leaked credentials, SSH and Telnet session data, and HTTP authentication requests for their composition, characteristics, attack patterns, and occurrence. We comparatively assess whether credentials from leaks surface in real-world attacks. We observe a significant overlap of honeypot logins with common password wordlists (e.g., Nmap, John) and defaultlists (e.g., Piata, Mirai), and limited overlaps between leaked credentials, logins, and dictionaries. We examine generative algorithms (e.g., keywalk patterns, hashcat rules), finding they are widely used by users but not attackers—unless included in wordlists. Our analyses uncover unseen passwords and methods likely designed to detect honeypots, highlighting an adversarial arms race. Our findings offer critical insights into password reuse, mutation, and attacker strategies, with implications for authentication security, attack detection, and digital forensics. Full article

The co-evolution between plants and herbivorous insects has led to a continuous arms race on defense and anti-defense mechanisms. In this process, insect-derived effectors are crucial for suppressing plant defense. Despite considerable progress in plant–insect interaction studies, the functional role of heat shock cognate protein 70 (HSC70) as an effector in herbivorous insects remains poorly characterized. This study provides evidence that HSC70-3 functions as an effector in interactions between the cruciferous specialist diamondback moth (Plutella xylostella) and its host plant radish (Raphanus sativus ‘Nanpan Prefecture’). Using immunofluorescence labeling and in situ Western blot (WB), we demonstrated that HSC70-3 is secreted into plant wound sites through larval gut regurgitant during feeding. Short-term host transfer experiments revealed tissue-specific hsc70-3 expression changes, indicating a dynamic response to plant-derived challenges. These findings suggest hsc70-3 is differentially regulated at transcriptional and translational levels to facilitate insect adaptation to host plant shifts. Knockout of hsc70-3 using CRISPR/Cas9 technology significantly impaired larval growth, prolonged development duration, and reduced pupal weight on host plants, indicating its involvement in host adaptation. However, knockout mutants exhibited no significant developmental defects when reared on an artificial diet, suggesting that hsc70-3 primarily functions in modulating plant-induced defense responses rather than directly affecting insect physiology. Collectively, these findings provide evidence for the functional roles of HSC70-3 in P. xylostella and plant interactions, laying a foundation for further investigations into insect effectors and their mechanisms in modulating plant defense responses. Full article

The prolonged arms race between plants and their antagonists has resulted in the evolution of multiple plant defence mechanisms to combat attacks by pests and pathogens. Silicon (Si) accumulation occurs mainly in grasses and provides a physical barrier against antagonists. Biochemical pathways may also be involved in Si-mediated plant resistance, although the precise mode of action in this case is less clear. Most studies have focussed on Si-based effects against single attackers. In this review, we consider how Si-based plant resistance operates when simultaneously and/or sequentially attacked by insect herbivores, fungal phytopathogens, and plant parasitic nematodes and how the plant hormones jasmonic acid (JA) and salicylic acid (SA) are involved. Si defence may mediate both intra- and interspecific competition and facilitation. Si has been found to impact plant-mediated interactions between insect herbivores within the same feeding guild and across different feeding guilds, with varying patterns of JA and SA. These results suggest that hormonal crosstalk may play a role in the Si-mediated effects, although this finding varied between studies. While some reports support the notion that JA is linked to Si responses, others indicate that Si supplementation reduces JA production. In terms of phytopathogens, SA has not been found to be involved in Si-mediated defences. Improving our understanding of Si-mediated plant defence could be beneficial for sustainable agriculture under future climates. Full article

SARS-CoV-2 virus and its variants remain a global health threat, due to their capacity for rapid evolution. Variants throughout the COVID-19 pandemic exhibited variations in virulence, impacting vaccine protection and disease severity. Investigating nonstructural protein variants is critical to understanding viral evolution and manipulation of host protein interactions. We focus on nonstructural protein 3 (nsp3), with multiple domains with different activities, including viral polyprotein cleavage, host deubiquitylation, de-ISGylation, and double-membrane vesicle formation. Using affinity purification–mass spectrometry (AP-MS), we identify differential protein interactions in nsp3 caused by mutations found in variants identified between 2019 and 2024: Alpha 20I, Beta 20H, Delta 21I, Delta 21J, Gamma 20J, Kappa 21B, Lambda 21G, Omicron 21K, and Omicron 21L. A small set of amino acid substitutions in the N-terminal region of nsp3 (nsp3.1) could be traced to increased interactions with RNA-binding proteins, which are vital in viral replication. Meanwhile, variants of the central region of nsp3 (nsp3.2) were found to share interactions with protein quality control machinery, including ER-associated degradation. In this construct, shared trends in interactor enrichment are observed between Omicron 21K and Delta 21I. These results underscore how minor mutations reshape host interactions, emphasizing the evolutionary arms race between the host and virus. We provide a roadmap to track the interaction changes driven by SARS-CoV-2 variant evolution. Full article

The evolutionary arms race between host restriction factors and viral antagonists provides crucial insights into immune system evolution and viral adaptation. This study investigates the structural and evolutionary dynamics of the double-domain restriction factors A3F and A3G and their viral inhibitor, Vif, across diverse primate species. By constructing 3D structural homology models and integrating ancestral sequence reconstruction (ASR), we identified patterns of sequence diversity, structural conservation, and functional adaptation. Inactive CD1 (Catalytic Domain 1) domains displayed greater sequence diversity and more positive surface charges than active CD2 domains, aiding nucleotide chain binding and intersegmental transfer. Despite variability, the CD2 DNA-binding grooves remained structurally consistent with conserved residues maintaining critical functions. A3F and A3G diverged in loop 7’ interaction strategies, utilising distinct molecular interactions to facilitate their roles. Vif exhibited charge variation linked to host species, reflecting its coevolution with A3 proteins. These findings illuminate how structural adaptations and charge dynamics enable both restriction factors and their viral antagonists to adapt to selective pressures. Our results emphasize the importance of studying structural evolution in host–virus interactions, with implications for understanding immune defense mechanisms, zoonotic risks, and viral evolution. This work establishes a foundation for further exploration of restriction factor diversity and coevolution across species. Full article

A significant number of people with disabilities rely on assistive devices, yet these technologies often face limitations, including restricted functionality, inadequate user-centered design, and a lack of standardized evaluation metrics. While upper-limb prosthetics remain a key research focus, existing commercial solutions still fall short of meeting daily reliability and usability needs, leading to high abandonment rates. CYBATHLON integrates assistive technologies into daily living tasks, driving innovation and prioritizing user needs. In CYBATHLON 2024, the HANDSON hand secured first place in the arm prosthesis race, showcasing breakthroughs in human–robot integration. This paper presents the HANDSON hand’s design, core technologies, training strategies, and competition performance, offering insights for advancing multifunctional prosthetic hands to tackle real-world challenges. Full article

Bacteriophages (phages) have coevolved with their bacterial hosts for billions of years. With the rise of antibiotic resistance, the significance of using phages in therapy is increasing. Investigating the dynamics of phage evolution can provide valuable insights for pre-adapting phages to more challenging clones of their hosts that may arise during treatment. Two primary models describe interactions in phage–bacteria systems: arms race dynamics and fluctuating selection dynamics. Numerous factors influence which dynamics dominate the interactions between a phage and its host. These dynamics, in turn, affect the coexistence of phages and bacteria, ultimately determining which organism will adapt more effectively to the other, and whether a stable state will be reached. In this review, we summarize key findings from research on phage–bacteria coevolution, focusing on the different concepts that can describe these interactions, the factors that may contribute to the prevalence of one model over others, and the effects of various dynamics on both phages and bacteria. Full article

This paper aims to review researchers’ concerns over time (from the 1980s to the present) regarding the transmission of mechanical vibrations in the workplace to the limbs, with a preponderant focus on the hand–arm system and some of the effects over time. These concerns are strictly approached from the point of view of their effects on different races, types of jobs, and forms of tools handled in the workplace. In this regard, when we refer to unwanted vibrations (harmful to a person) in the industrial environment, these are vibrations that can produce harmful effects on an individual’s health, leading to occupational diseases such as white finger syndrome. Some of the terms specific to the studies reviewed, such as vibration perception and biodynamic force, among others, are explained in this paper as needed. Studies in the field have shown that vibrations are transmitted differently when the arm is bent at the elbow joint compared to when it is outstretched; also, the transmission of vibrations is influenced by other factors, such as the temperature of the working environment, the gender and age of the person who is using the vibrating devices, and last but not least, the time of their use and the frequency. The conclusions presented by the specialized literature often refer to existing standards, in particular SR EN ISO 5349/2003. Finally, in this paper, conclusions are drawn regarding how to analyze the transmission of vibrations over time, and some recommendations are given for avoiding or minimizing them, which can be added to the already-existing standards. Full article

We propose a hypothesis for the simultaneous emergence of bacteria, archaea, viruses, and mobile elements by sequential and concrete biochemical pathways. The emergence process can be considered analogous to crystallization, where genetic and biochemical systems stabilize as organisms evolve from their common ancestor, the LUCA, which was a non-free-living pool of single operon type genomes including double-stranded (ds) DNA at an ancient submarine alkaline vent. Each dsDNA operon was transcribed by different systems in σ, TFIIB, or TBP genomes. Double-stranded DNA operons can fuse and stabilize through the action of specific transcription systems, leading to differentiation between the Bacteria (σ genome) and Archaea (TBP genome) domains. Error catastrophe can be overcome by the parallel gain of DNA replication and DNA repair mechanisms in both genomes. Enlarged DNA enabled efficient local biochemical reactions. Both genomes independently recruited lipids to facilitate reactions by forming coacervates at the chamber of the vent. Bilayer lipid membrane formation, proto-cell formation with a permeable membrane, proto-cell division, and the evolution of membrane-associated biochemistry are presented in detail. Simultaneous crystallization of systems in non-free-living bacteria and non-free-living archaea triggered the co-crystallization of primitive viruses and mobile elements. An arms race between non-free-living cells and primitive viruses finally led to free-living cells with a cell wall and mature viruses. Full article

Background/Objectives: Acupuncture is an efficacious integrative therapy for treating pain, fatigue, and sleep disturbance (the psychoneurological symptom cluster) in breast cancer survivors. However, the mechanisms underlying its effects remain unclear, and related metabolomics studies are limited. This study aimed to examine serum metabolite changes after acupuncture and their relationships to symptom improvement. Methods: Forty-two breast cancer survivors experiencing pain, fatigue, and sleep disturbance participated in a single-arm acupuncture trial. They received a 10-session acupuncture intervention over 5 weeks. Fasting blood samples and symptom surveys were collected before and after the acupuncture intervention, and untargeted metabolomics profiling was conducted on serum samples. Mixed-effects models adjusting for covariates (age, race, body mass index, and antidepressant use) were applied for analysis. Results: After acupuncture, there was a significant reduction in the psychoneurological symptom cluster (mean reduction = −6.2, p < 0.001).Bonferroni correction was applied to 40 independent metabolite clusters (α = 0.00125); cysteine-glutathione disulfide (p = 0.0006) significantly increased, and retinal (p = 0.0002) and cis-urocanate (p = 0.0005) were significantly decreased. Dimethyl sulfone (p = 0.00139) showed a trend towards reduction after acupuncture and its change (p = 0.04, β =1.97) was positively associated with reduction in the psychoneurological symptom cluster. Also, increased lauroylcarnitine (p = 0.0009) and decreased cytosine (p = 0.0008) can modulate the therapeutic effects of acupuncture. Conclusions: Acupuncture demonstrates beneficial effects on the psychoneurological symptom cluster in breast cancer survivors. Dimethyl sulfone may be a promising mediator in the relationship between acupuncture and psychoneurological symptoms, while acylcarnitine metabolism may modulate the therapeutic effect of acupuncture. Full article

Fusarium wilt is a soil borne fungal disease that has devastated banana production in plantations around the world. Most Cavendish-type bananas are susceptible to strains of Fusarium oxysporum f. sp. cubense (Foc) belonging to the Subtropical Race 4 (STR4) and Tropical Race 4 (TR4). The wild banana diploid Musa acuminata ssp. malaccensis (AA, 2n = 22) carries resistance to Foc TR4. A previous study using segregating populations derived from M. acuminata ssp. malaccensis identified a quantitative trait locus (QTL) (12.9 cM) on the distal part of the long arm of chromosome 3, conferring resistance to both Foc TR4 and STR4. An SNP marker, based on the gene Macma4_03_g32560 of the reference genome ‘DH-Pahang’ v4, detected the segregation of resistance to Foc STR4 and TR4 at this locus. Using this marker, we assessed putative TR4 resistance sources in 123 accessions from the breeding program in Brazil, which houses one of the largest germplasm collections of Musa spp. in the world. The resistance marker allele was detected in a number of accessions, including improved diploids and commercial cultivars. Sequencing further confirmed the identity of the SNP at this locus. Results from the marker screening will assist in developing strategies for pre-breeding Foc TR4-resistant bananas. This study represents the first-ever report of marker-assisted screening in a comprehensive collection of banana accessions in South America. Accessions carrying the resistance marker allele will be validated in the field to confirm Foc TR4 resistance. Full article

This research compares the performance of structural steel and general aluminum alloys in identical crank arm designs when bearing loads are applied at different stages of paddling, such as starting, climbing, and racing. Finite element analysis (FEA) was utilized to evaluate fatigue life and safety factors. A design modification strategy was proposed to reduce critical stress in failure zones, resulting in an increased fatigue life. Although steel and aluminum alloys both have significant life and nominal high fatigue life during racing and climbing, respectively, aluminum alloys are unable to withstand a 1815 N starting load, even after modification. Full article