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14 pages, 265 KiB  
Article
Bovine Leptospirosis: Serology, Isolation, and Risk Factors in Dairy Farms of La Laguna, Mexico
by Alejandra María Pescador-Gutiérrez, Jesús Francisco Chávez-Sánchez, Lucio Galaviz-Silva, Juan José Zarate-Ramos, José Pablo Villarreal-Villarreal, Sergio Eduardo Bernal-García, Uziel Castillo-Velázquez, Rubén Cervantes-Vega and Ramiro Avalos-Ramirez
Life 2025, 15(8), 1224; https://doi.org/10.3390/life15081224 (registering DOI) - 2 Aug 2025
Abstract
Leptospirosis is a globally significant zoonosis affecting animal health, productivity, and the environment. While typically associated with tropical climates, its persistence in semi-arid regions such as La Laguna, Mexico—characterized by low humidity, high temperatures, and limited water sources—remains poorly understood. Although these adverse [...] Read more.
Leptospirosis is a globally significant zoonosis affecting animal health, productivity, and the environment. While typically associated with tropical climates, its persistence in semi-arid regions such as La Laguna, Mexico—characterized by low humidity, high temperatures, and limited water sources—remains poorly understood. Although these adverse environmental conditions theoretically limit the survival of Leptospira, high livestock density and synanthropic reservoirs (e.g., rodents) may compensate, facilitating transmission. In this cross-sectional study, blood sera from 445 dairy cows (28 herds: 12 intensive [MI], 16 semi-intensive [MSI] systems) were analyzed via microscopic agglutination testing (MAT) against 10 pathogenic serovars. Urine samples were cultured for active Leptospira detection. Risk factors were assessed through epidemiological surveys and multivariable analysis. This study revealed an overall apparent seroprevalence of 27.0% (95% CI: 22.8–31.1), with significantly higher rates in MSI (54.1%) versus MI (12.2%) herds (p < 0.001) and an estimated true seroprevalence of 56.3% (95% CI: 50.2–62.1) in MSI and 13.1% (95% CI: 8.5–18.7) in MI herds (p < 0.001). The Sejroe serogroup was isolated from urine in both systems, confirming active circulation. In MI herds, rodent presence (OR: 3.6; 95% CI: 1.6–7.9) was identified as a risk factor for Leptospira seropositivity, while first-trimester abortions (OR:10.1; 95% CI: 4.2–24.2) were significantly associated with infection. In MSI herds, risk factors associated with Leptospira seropositivity included co-occurrence with hens (OR: 2.8; 95% CI: 1.5–5.3) and natural breeding (OR: 2.0; 95% CI: 1.1–3.9), whereas mastitis/agalactiae (OR: 2.8; 95% CI: 1.5–5.2) represented a clinical outcome associated with seropositivity. Despite semi-arid conditions, Leptospira maintains transmission in La Laguna, particularly in semi-intensive systems. The coexistence of adapted (Sejroe) and incidental serogroups underscores the need for targeted interventions, such as rodent control in MI systems and poultry management in MSI systems, to mitigate both zoonotic and economic impacts. Full article
(This article belongs to the Section Animal Science)
18 pages, 921 KiB  
Article
Occurrence and Transfer by Conjugation of Linezolid- Resistance Among Non-Enterococcus faecalis and Enterococcus faecium in Intensive Pig Farms
by Giorgia Piccioni, Andrea Di Cesare, Raffaella Sabatino, Gianluca Corno, Gianmarco Mangiaterra, Daniela Marchis and Barbara Citterio
Microbiol. Res. 2025, 16(8), 180; https://doi.org/10.3390/microbiolres16080180 (registering DOI) - 2 Aug 2025
Abstract
Enterococcus spp. are opportunistic and nosocomial pathogens. Intensive pig farms have been recently described as important hotspots for antibiotic resistance and reservoirs of potentially pathogenic enterococci, including other species than the most known E. faecalis and E. faecium. Here, we identified Linezolid-resistant [...] Read more.
Enterococcus spp. are opportunistic and nosocomial pathogens. Intensive pig farms have been recently described as important hotspots for antibiotic resistance and reservoirs of potentially pathogenic enterococci, including other species than the most known E. faecalis and E. faecium. Here, we identified Linezolid-resistant non-E. faecalis and E. faecium (NFF) Enterococcus strains isolated from different production stages (suckling piglets, weaning pigs, and fatteners) across six intensive pig farms. The transferability of the linezolid-resistance determinants was assessed by bacterial conjugation and strains were also characterized for biofilm production, hemolytic and gelatinase activity. Among 64 identified NFF Enterococcus strains, 27 were resistant to at least three different antibiotic classes and 8/27 specifically to Linezolid. E. gallinarum and E. casseliflavus both transferred their Linezolid resistance determinants to the main pathogenic species E. faecium. Remarkably, this is the first report of the optrA gene transfer from E. casseliflavus to E. faecium by conjugation, which can greatly contribute to the spread of antibiotic resistance genes among pathogenic enterococcal species. The “weaning pigs” stage exhibited a significantly higher number of antibiotic-resistant enterococci than the “fatteners”. These findings highlight the importance of monitoring pig farms as hotspots for the spread of antibiotic-resistant enterococci, especially in the early stages of production. Furthermore, they underscore the significant role of NFF Enterococcus species as carriers of antibiotic resistance genes, even to last-resort antibiotics, which may be transferable to the major enterococcal species. Full article
(This article belongs to the Special Issue Zoonotic Bacteria: Infection, Pathogenesis and Drugs—Second Edition)
18 pages, 2123 KiB  
Article
Neuroprotective Effect Against Ischemic Stroke of the Novel Functional Drink Containing Anthocyanin and Dietary Fiber Enriched-Functional Ingredient from the Mixture of Banana and Germinated Jasmine Rice
by Mubarak Muhammad, Jintanaporn Wattanathorn, Wipawee Thukham-mee, Sophida Phuthong and Supaporn Muchimapura
Life 2025, 15(8), 1222; https://doi.org/10.3390/life15081222 (registering DOI) - 2 Aug 2025
Abstract
Due to the stroke-protective effects of dietary fiber and anthocyanin together with the synergistic interaction, we hypothesized that the functional drink containing the anthocyanins and dietary fiber-enriched functional ingredient from banana and germinated black Jasmine rice (BR) should protect against ischemic stroke. [...] Read more.
Due to the stroke-protective effects of dietary fiber and anthocyanin together with the synergistic interaction, we hypothesized that the functional drink containing the anthocyanins and dietary fiber-enriched functional ingredient from banana and germinated black Jasmine rice (BR) should protect against ischemic stroke. BR at doses of 300, 600, and 900 mg/kg body weight (BW) was orally given to male Wistar rats weighing 290–350 g once daily for 21 days, and they were subjected to ischemic reperfusion injury induced by temporary occlusion of the middle cerebral artery (MCAO/IR) for 90 min. The treatment was prolonged for 21 days after MCAO/IR. They were assessed for brain infarction volume, neuron density, Nrf2, MDA, and catalase in the cortex together with serum TNF-α and IL-6. Lactobacillus and Bifidobacterium spp. in feces were also assessed. Our results showed that BR improved the increase in brain infarcted volume, MDA, TNF-α, and IL-6 and the decrease in neuron density, Nrf2, catalase, and both bacteria spp. induced by MCAO/IR. These data suggest the stroke-protective effect of the novel functional drink, and the action may involve the improvement of Nrf2, oxidative stress, inflammation, and the amount of Lactobacillus and Bifidobacterium spp. Full article
(This article belongs to the Special Issue Bioactive Compounds for Medicine and Health)
23 pages, 2750 KiB  
Article
Seasonal Sea Surface Temperatures from Mercenaria spp. During the Plio-Pleistocene: Oxygen Isotope Versus Clumped Isotope Paleothermometers
by Garrett F. N. Braniecki, Donna Surge and Ethan G. Hyland
Geosciences 2025, 15(8), 295; https://doi.org/10.3390/geosciences15080295 (registering DOI) - 2 Aug 2025
Abstract
The Mid-Piacenzian Warm Interval (MPWI) is marked by warmer temperatures and higher atmospheric CO2 levels than today, making it an analogue for late-21st-century-warming, whereas the early Pleistocene cooling is more like today. We compare seasonal growth temperatures derived from oxygen isotope ratios [...] Read more.
The Mid-Piacenzian Warm Interval (MPWI) is marked by warmer temperatures and higher atmospheric CO2 levels than today, making it an analogue for late-21st-century-warming, whereas the early Pleistocene cooling is more like today. We compare seasonal growth temperatures derived from oxygen isotope ratios (δ18O) and clumped isotopes (∆47) in Mercenaria. Modern shells were previously collected from coastal NC. The fossil shells are from the Duplin (MPWI) and Waccamaw Formations (early Pleistocene), NC. Oxygen isotope ratios range from −2.2‰ to 2.3‰ (modern), −0.9‰ to 2.4‰ (MPWI), and −0.9‰ to 2.9‰ (early Pleistocene). The values of Δ47 range from 0.576‰ to 0.639‰ (modern), 0.566‰ to 0.621‰ (MPWI), and 0.581‰ to 0.615‰ (early Pleistocene). We show that Mercenaria do not require a species-specific ∆47 calibration. Modern and MPWI ∆47-derived summer/winter temperatures (SST∆47) and seasonal amplitudes are indistinguishable from δ18O-derived temperatures. The early Pleistocene summer SST∆47 is indistinguishable from δ18O-derived temperatures, but the winter SST∆47 is warmer by 5 °C and may reflect within-shell time averaging. The modern summer/winter SST∆47 are indistinguishable from the MPWI, but the MPWI has a lower seasonal amplitude by 5 °C. Compared to our calculated δ18Osw values, modeled values for the MPWI are within error but are much lower, and they are not within error for the early Pleistocene. Full article
(This article belongs to the Special Issue Pliocene Studies in Paleobiology, Paleoenvironment and Paleoclimate)
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10 pages, 960 KiB  
Article
Study on the Vectoring Potential of Halyomorpha halys for Pantoea stewartii subsp. stewartii, the Pathogen Causing Stewart’s Disease in Maize
by Francesca Costantini, Agostino Strangi, Fabio Mosconi, Leonardo Marianelli, Giuseppino Sabbatini-Peverieri, Pio Federico Roversi and Valeria Scala
Agriculture 2025, 15(15), 1671; https://doi.org/10.3390/agriculture15151671 (registering DOI) - 2 Aug 2025
Abstract
Pantoea stewartii subsp. stewartii (Pss) is a Gram-negative bacterium first documented in North America, and is the causal agent of Stewart’s disease in maize (Zea mays), especially in sweet corn. First identified in North America, it is primarily spread by insect [...] Read more.
Pantoea stewartii subsp. stewartii (Pss) is a Gram-negative bacterium first documented in North America, and is the causal agent of Stewart’s disease in maize (Zea mays), especially in sweet corn. First identified in North America, it is primarily spread by insect vectors like the corn flea beetle (Chaetocnema Pulicaria) in the United States. However, Pss has since spread globally—reaching parts of Africa, Asia, the Americas, and Europe—mainly through the international seed trade. Although this trade is limited, it has still facilitated the pathogen’s global movement, as evidenced by numerous phytosanitary interceptions. Recent studies in Italy, as indicated in the EFSA journal, reported that potential alternative vectors were identified, including Phyllotreta spp. and the invasive Asian brown marmorated stink bug (Halyomorpha halys); the latter tested positive in PCR screenings, raising concerns due to its broad host range and global distribution. This information has prompted studies to verify the ability of Halyomorpha halys to vector Pss to assess the risk and prevent the further spread of Pss in Europe. In this study, we explored the potential transmission of Pss by the brown marmorated stink bugs in maize plants, following its feeding on Pss-inoculated maize, as well as the presence of Pss within the insect’s body. Full article
(This article belongs to the Section Crop Protection, Diseases, Pests and Weeds)
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19 pages, 812 KiB  
Article
Harnessing Extremophile Bacillus spp. for Biocontrol of Fusarium solani in Phaseolus vulgaris L. Agroecosystems
by Tofick B. Wekesa, Justus M. Onguso, Damaris Barminga and Ndinda Kavesu
Bacteria 2025, 4(3), 39; https://doi.org/10.3390/bacteria4030039 (registering DOI) - 1 Aug 2025
Abstract
Common bean (Phaseolus vulgaris L.) is a critical protein-rich legume supporting food and nutritional security globally. However, Fusarium wilt, caused by Fusarium solani, remains a major constraint to production, with yield losses reaching up to 84%. While biocontrol strategies have been [...] Read more.
Common bean (Phaseolus vulgaris L.) is a critical protein-rich legume supporting food and nutritional security globally. However, Fusarium wilt, caused by Fusarium solani, remains a major constraint to production, with yield losses reaching up to 84%. While biocontrol strategies have been explored, most microbial agents are sourced from mesophilic environments and show limited effectiveness under abiotic stress. Here, we report the isolation and characterization of extremophilic Bacillus spp. from the hypersaline Lake Bogoria, Kenya, and their biocontrol potential against F. solani. From 30 isolates obtained via serial dilution, 9 exhibited antagonistic activity in vitro, with mycelial inhibition ranging from 1.07-1.93 cm 16S rRNA sequencing revealed taxonomic diversity within the Bacillus genus, including unique extremotolerant strains. Molecular screening identified genes associated with the biosynthesis of antifungal metabolites such as 2,4-diacetylphloroglucinol, pyrrolnitrin, and hydrogen cyanide. Enzyme assays confirmed substantial production of chitinase (1.33–3160 U/mL) and chitosanase (10.62–28.33 mm), supporting a cell wall-targeted antagonism mechanism. In planta assays with the lead isolate (B7) significantly reduced disease incidence (8–35%) and wilt severity (1–5 affected plants), while enhancing root colonization under pathogen pressure. These findings demonstrate that extremophile-derived Bacillus spp. possess robust antifungal traits and highlight their potential as climate-resilient biocontrol agents for sustainable bean production in arid and semi-arid agroecosystems. Full article
21 pages, 6211 KiB  
Article
In Silico and In Vitro Potential Antifungal Insights of Insect-Derived Peptides in the Management of Candida sp. Infections
by Catarina Sousa, Alaka Sahoo, Shasank Sekhar Swain, Payal Gupta, Francisco Silva, Andreia S. Azevedo and Célia Fortuna Rodrigues
Int. J. Mol. Sci. 2025, 26(15), 7449; https://doi.org/10.3390/ijms26157449 (registering DOI) - 1 Aug 2025
Viewed by 56
Abstract
The worldwide increase in antifungal resistance, particularly in Candida sp., requires the exploration of novel therapeutic agents. Natural compounds have been a rich source of antimicrobial molecules, where peptides constitute the class of the most bioactive components. Therefore, this study looks into the [...] Read more.
The worldwide increase in antifungal resistance, particularly in Candida sp., requires the exploration of novel therapeutic agents. Natural compounds have been a rich source of antimicrobial molecules, where peptides constitute the class of the most bioactive components. Therefore, this study looks into the target-specific binding efficacy of insect-derived antifungal peptides (n = 37) as possible alternatives to traditional antifungal treatments. Using computational methods, namely the HPEPDOCK and HDOCK platforms, molecular docking was performed to evaluate the interactions between selected key fungal targets, lanosterol 14-demethylase, or LDM (PDB ID: 5V5Z), secreted aspartic proteinase-5, or Sap-5 (PDB ID: 2QZX), N-myristoyl transferase, or NMT (PDB ID: 1NMT), and dihydrofolate reductase, or DHFR, of C. albicans. The three-dimensional peptide structure was modelled through the PEP-FOLD 3.5 tool. Further, we predicted the physicochemical properties of these peptides through the ProtParam and PEPTIDE 2.0 tools to assess their drug-likeness and potential for therapeutic applications. In silico results show that Blap-6 from Blaps rhynchopeter and Gomesin from Acanthoscurria gomesiana have the most antifungal potential against all four targeted proteins in Candida sp. Additionally, a molecular dynamics simulation study of LDM-Blap-6 was carried out at 100 nanoseconds. The overall predictions showed that both have strong binding abilities and are good candidates for drug development. In in vitro studies, Gomesin achieved complete biofilm eradication in three out of four Candida species, while Blap-6 showed moderate but consistent reduction across all species. C. tropicalis demonstrated relative resistance to complete eradication by both peptides. The present study provides evidence to support the antifungal activity of certain insect peptides, with potential to be used as alternative drugs or as a template for a new synthetic or modified peptide in pursuit of effective therapies against Candida spp. Full article
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18 pages, 2714 KiB  
Article
Assessing the Efficacy of Chemical and Green-Synthesized CuO Nanoparticles in Combatting Clinical Candida Species: A Comparative Study
by Hiba Younis Khalaf, Ferid Ben Nasr, Bashar Sadeq Noomi, Sami Mnif and Sami Aifa
Microbiol. Res. 2025, 16(8), 178; https://doi.org/10.3390/microbiolres16080178 (registering DOI) - 1 Aug 2025
Viewed by 47
Abstract
The most prevalent growth of Candida cells is based on biofilm development, which causes the intensification of antifungal resistance against a large range of chemicals. Nanoparticles can be synthesized using green methods via various biological extracts and reducing agents to control Candida biofilms. [...] Read more.
The most prevalent growth of Candida cells is based on biofilm development, which causes the intensification of antifungal resistance against a large range of chemicals. Nanoparticles can be synthesized using green methods via various biological extracts and reducing agents to control Candida biofilms. This study aims to compare copper oxide nanoparticles (CuONPs) synthesized through chemical methods and those synthesized using Cinnamomum verum-based green methods against Candida infections and their biofilms isolated from Iraqi patients, with the potential to improve treatment outcomes. The physical and chemical properties of these nanoparticles were characterized using Fourier-transform infrared spectroscopy (FT-IR,) scanning electron microscopy (SEM), transmission electron microscopy (TEM), atomic force microscopy (AFM) and X-ray diffraction (XRD). Four strains of Candida were isolated and characterized from Iraqi patients in Tikrit Hospital and selected based on their ability to form biofilm on polystyrene microplates. The activity of green-synthesized CuONPs using cinnamon extract was compared with both undoped and doped (Fe, Sn) chemically synthesized CuONPs. Four pathogenic Candida strains (Candida glabrata, Candida lusitaniae, Candida albicans, and Candida tropicalis) were isolated from Iraqi patients, demonstrating high biofilm formation capabilities. Chemically and green-synthesized CuONPs from Cinnamomum verum showed comparable significant antiplanktonic and antibiofilm activities against all strains. Doped CuONPs with iron or tin demonstrated lower minimum inhibitory concentration (MIC) values, indicating stronger antibacterial activity, but exhibited weaker anti-adhesive properties compared to other nanoparticles. The antiadhesive activity revealed that C. albicans strain seems to produce the most resistant biofilms while C. glabrata strain seems to be more resistant towards the doped CuONPs. Moreover, C. tropicalis was the most sensitive to all the CuONPs. Remarkably, at a concentration of 100 µg/mL, all CuONPs were effective in eradicating preformed biofilms by 47–66%. The findings suggest that CuONPs could be effective in controlling biofilm formation by Candida species resistant to treatment in healthcare settings. Full article
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29 pages, 28274 KiB  
Article
Long-Term Neuroprotective Effects of Hydrogen-Rich Water and Memantine in Chronic Radiation-Induced Brain Injury: Behavioral, Histological, and Molecular Insights
by Kai Xu, Huan Liu, Yinhui Wang, Yushan He, Mengya Liu, Haili Lu, Yuhao Wang, Piye Niu and Xiujun Qin
Antioxidants 2025, 14(8), 948; https://doi.org/10.3390/antiox14080948 (registering DOI) - 1 Aug 2025
Viewed by 37
Abstract
Hydrogen-rich water (HRW) has shown neuroprotective effects in acute brain injury, but its role in chronic radiation-induced brain injury (RIBI) remains unclear. This study investigated the long-term efficacy of HRW in mitigating cognitive impairment and neuronal damage caused by chronic RIBI. Fifty male [...] Read more.
Hydrogen-rich water (HRW) has shown neuroprotective effects in acute brain injury, but its role in chronic radiation-induced brain injury (RIBI) remains unclear. This study investigated the long-term efficacy of HRW in mitigating cognitive impairment and neuronal damage caused by chronic RIBI. Fifty male Sprague Dawley rats were randomly divided into five groups: control, irradiation (IR), IR with memantine, IR with HRW, and IR with combined treatment. All but the control group received 20 Gy whole-brain X-ray irradiation, followed by daily interventions for 60 days. Behavioral assessments, histopathological analyses, oxidative stress measurements, 18F-FDG PET/CT imaging, transcriptomic sequencing, RT-qPCR, Western blot, and serum ELISA were performed. HRW significantly improved anxiety-like behavior, memory, and learning performance compared to the IR group. Histological results revealed that HRW reduced neuronal swelling, degeneration, and loss and enhanced dendritic spine density and neurogenesis. PET/CT imaging showed increased hippocampal glucose uptake in the IR group, which was alleviated by HRW treatment. Transcriptomic and molecular analyses indicated that HRW modulated key genes and proteins, including CD44, CD74, SPP1, and Wnt1, potentially through the MIF, Wnt, and SPP1 signaling pathways. Serum CD44 levels were also lower in treated rats, suggesting its potential as a biomarker for chronic RIBI. These findings demonstrate that HRW can alleviate chronic RIBI by preserving neuronal structure, reducing inflammation, and enhancing neuroplasticity, supporting its potential as a therapeutic strategy for radiation-induced cognitive impairment. Full article
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13 pages, 2125 KiB  
Article
In Vitro Antagonism of Two Isolates of the Genus Trichoderma on Fusarium and Botryodiplodia sp., Pathogenic Fungi of Schizolobium parahyba in Ecuador
by Carlos Belezaca-Pinargote, Bélgica Intriago-Pinargote, Brithany Belezaca-Pinargote, Edison Solano-Apuntes, Ricardo Arturo Varela-Pardo and Paola Díaz-Navarrete
Int. J. Plant Biol. 2025, 16(3), 85; https://doi.org/10.3390/ijpb16030085 (registering DOI) - 1 Aug 2025
Viewed by 34
Abstract
A newly emerging disease affecting Schizolobium parahyba (commonly known as pachaco), termed “decline and dieback,” has been reported in association with the fungal pathogens Fusarium sp. and Botryodiplodia sp. This study assessed the antagonistic potential of two Trichoderma sp. isolates (CEP-01 and CEP-02) [...] Read more.
A newly emerging disease affecting Schizolobium parahyba (commonly known as pachaco), termed “decline and dieback,” has been reported in association with the fungal pathogens Fusarium sp. and Botryodiplodia sp. This study assessed the antagonistic potential of two Trichoderma sp. isolates (CEP-01 and CEP-02) against these phytopathogens under controlled laboratory conditions. The effects of three temperature regimes (5 ± 2 °C, 24 ± 2 °C, and 30 ± 2 °C) on the growth and inhibitory activity of two Trichoderma spp. isolates were evaluated using a completely randomized design. The first experiment included six treatments with five replicates, while the second comprised twelve treatments, also with five replicates. All assays were conducted on PDA medium. No fungal growth was observed at 5 ± 2 °C. However, at 24 ± 2 °C and 30 ± 2 °C, both isolates reached maximum growth within 72 h. At 24 ± 2 °C, both Trichoderma spp. isolates exhibited inhibitory activity against Fusarium sp. FE07 and FE08, with radial growth inhibition percentages (RGIP) ranging from 37.6% to 44.4% and 52,8% to 54.6%, respectively. When combined, the isolates achieved up to 60% inhibition against Fusarium sp., while Botryodiplodia sp. was inhibited by 40%. At 30 ± 2 °C, the antagonistic activity of Trichoderma sp. CEP-01 declined (25.6–32.4% RGIP), whereas Trichoderma sp. CEP-02 showed increased inhibition (60.3%–67.2%). The combination of isolates exhibited the highest inhibitory effect against Fusarium sp. FE07 and FE08 (68.4%–69.3%). Nonetheless, the inhibitory effect on Botryodiplodia sp. BIOT was reduced under elevated temperatures across all treatments. These findings reinforce the potential of Trichoderma spp. isolates as a viable and eco-friendly alternative for the biological control of pathogens affecting S. parahyba, contributing to more sustainable disease management practices. The observed inhibitory capacity of Trichoderma sp., especially under optimal temperature conditions, highlights its potential for application in integrated disease management programs, contributing to forest health and reducing reliance on chemical products. Full article
(This article belongs to the Section Plant–Microorganisms Interactions)
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18 pages, 3060 KiB  
Article
Unveiling the Impact of Climatic Factors on the Distribution Patterns of Caragana spp. in China’s Three Northern Regions
by Weiwei Zhao, Yujia Liu, Yanxia Li, Chunjing Zou and Hideyuki Shimizu
Plants 2025, 14(15), 2368; https://doi.org/10.3390/plants14152368 - 1 Aug 2025
Viewed by 79
Abstract
Understanding the impacts of climate change on species’ geographic distributions is fundamental for biodiversity conservation and resource management. As a key plant group for ecological restoration and windbreak and sand fixation in arid and semi-arid ares in China’s Three Northern Regions (Northeast, North, [...] Read more.
Understanding the impacts of climate change on species’ geographic distributions is fundamental for biodiversity conservation and resource management. As a key plant group for ecological restoration and windbreak and sand fixation in arid and semi-arid ares in China’s Three Northern Regions (Northeast, North, and Northwest China), Caragana spp. exhibit distribution patterns whose regulatory mechanisms by environmental factors remain unclear, with a long-term lack of climatic explanations influencing their spatial distribution. This study integrated 2373 occurrence records of 44 Caragana species in China’s Three Northern Regions with four major environmental variable categories. Using the Biomod2 ensemble model, current and future climate scenario-based suitable habitats for Caragana spp. were predicted. This study innovatively combined quantitative analyses with Kira’s thermal indexes (warmth index, coldness index) and Wenduo Xu’s humidity index (HI) to elucidate species-specific relationships between distribution patterns and hydrothermal climatic constraints. The main results showed that (1) compared to other environmental factors, climate is the key factor affecting the distribution of Caragana spp. (2) The current distribution centroid of Caragana spp. is located in Alxa Left Banner, Inner Mongolia. In future scenarios, the majority of centroids will shift toward lower latitudes. (3) The suitable habitats for Caragana spp. will expand overall under future climate scenarios. High-stress scenarios exhibit greater spatial changes than low-stress scenarios. (4) Hydrothermal requirements varied significantly among species in China’s Three Northern Regions, and 44 Caragana species can be classified into five distinct types based on warmth index (WI) and humidity index (HI). The research findings will provide critical practical guidance for ecological initiatives such as the Three-North Shelterbelt Program and the restoration and management of degraded ecosystems in arid and semi-arid regions under global climate change. Full article
(This article belongs to the Section Plant Ecology)
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12 pages, 788 KiB  
Article
Gut Microbial Composition on Dienogest Therapy in Patients with Endometriosis
by Veronika Pronina, Pavel Denisov, Vera Muravieva, Alexey Skorobogatiy, Ksenia Zhigalova, Galina Chernukha, Gennady Sukhikh and Tatiana Priputnevich
Microbiol. Res. 2025, 16(8), 169; https://doi.org/10.3390/microbiolres16080169 - 1 Aug 2025
Viewed by 104
Abstract
Endometriosis is a chronic inflammatory condition affecting approximately 10% of women of reproductive age, characterized by pelvic pain, dysmenorrhea, and infertility. Emerging evidence suggests a potential link between gut microbiota dysbiosis and endometriosis pathogenesis, mediated through hormonal regulation, immune modulation, and systemic inflammation. [...] Read more.
Endometriosis is a chronic inflammatory condition affecting approximately 10% of women of reproductive age, characterized by pelvic pain, dysmenorrhea, and infertility. Emerging evidence suggests a potential link between gut microbiota dysbiosis and endometriosis pathogenesis, mediated through hormonal regulation, immune modulation, and systemic inflammation. Dienogest (DNG) is widely used for endometriosis management, but its effects on gut microbiota remain underexplored. This study investigates the impact of DNG on gut microbial composition in endometriosis patients, aiming to elucidate its therapeutic mechanisms beyond hormonal modulation. DNG therapy led to a significant reduction in the Bacillota/Bacteroidota ratio (p = 0.0421), driven by decreased Staphylococcus spp. (p = 0.0244) and increased commensal bacteria such as Lactobacillus spp. and Collinsella aerofaciens (p = 0.049). Species richness and alpha diversity indices showed a non-significant upward trend. Notably, C. aerofaciens, a butyrate producer linked to gut barrier integrity, was detected twice as frequently during therapy. The study also observed reductions in facultative anaerobes like Enterococcus spp. and a trend toward higher titers of beneficial Bacteroidota. This study provides the first evidence that DNG therapy modulates gut microbiota in endometriosis patients, favoring a composition associated with anti-inflammatory and barrier-protective effects. The observed shifts—reduced opportunistic pathogens and increased symbionts—suggest a novel mechanism for DNG’s efficacy, potentially involving the microbial regulation of estrogen metabolism and immune responses. Full article
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21 pages, 2608 KiB  
Article
Quality and Quantity Losses of Tomatoes Grown by Small-Scale Farmers Under Different Production Systems
by Tintswalo Molelekoa, Edwin M. Karoney, Nazareth Siyoum, Jarishma K. Gokul and Lise Korsten
Horticulturae 2025, 11(8), 884; https://doi.org/10.3390/horticulturae11080884 (registering DOI) - 1 Aug 2025
Viewed by 97
Abstract
Postharvest losses amongst small-scale farmers in developing countries are high due to inadequate resources and infrastructure. Among the various affected crops, tomatoes are particularly vulnerable; however, studies on postharvest losses of most fruits and vegetables are limited. Therefore, this study aimed to assess [...] Read more.
Postharvest losses amongst small-scale farmers in developing countries are high due to inadequate resources and infrastructure. Among the various affected crops, tomatoes are particularly vulnerable; however, studies on postharvest losses of most fruits and vegetables are limited. Therefore, this study aimed to assess postharvest tomato losses under different production systems within the small-scale supply chain using the indirect assessment (questionnaires and interviews) and direct quantification of losses. Farmers reported tomato losses due to insects (82.35%), cracks, bruises, and deformities (70.58%), and diseases (64.71%). Chemical sprays were the main form of pest and disease control reported by all farmers. The direct quantification sampling data revealed that 73.07% of the tomatoes were substandard at the farm level, with 47.92% and 25.15% categorized as medium-quality and poor-quality, respectively. The primary contributors to the losses were decay (39.92%), mechanical damage (31.32%), and blotchiness (27.99%). Postharvest losses were significantly higher under open-field production systems compared to closed tunnels. The fungi associated with decay were mainly Geotrichum, Fusarium spp., and Alternaria spp. These findings demonstrate the main drivers behind postharvest losses, which in turn highlight the critical need for intervention through training and support, including the use of postharvest loss reduction technologies to enhance food security. Full article
(This article belongs to the Section Postharvest Biology, Quality, Safety, and Technology)
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16 pages, 1291 KiB  
Article
Biotechnological Potential of Weizmannia ginsengihumi in the Conversion of Xylose into Lactic Acid: A Sustainable Strategy
by Larissa Provasi Santos, Ingrid Yoshimura, Fernanda Batista de Andrade and Jonas Contiero
Fermentation 2025, 11(8), 447; https://doi.org/10.3390/fermentation11080447 (registering DOI) - 31 Jul 2025
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Abstract
The aim of this study was to isolate Weizmannia spp. that produce lactic acid from xylose and use an experimental design to optimize the production of the metabolite. After isolation, the experiments were conducted in xylose-yeast extract-peptone medium. The identification of isolates was [...] Read more.
The aim of this study was to isolate Weizmannia spp. that produce lactic acid from xylose and use an experimental design to optimize the production of the metabolite. After isolation, the experiments were conducted in xylose-yeast extract-peptone medium. The identification of isolates was performed using the 16S rDNA PCR technique, followed by sequencing. A central composite rotatable design (CCRD) was used to optimize the concentrations of the carbon source (xylose), nitrogen source (yeast extract and peptone), and sodium acetate. Two strains were considered promising for lactic acid production, with W. coagulans BLMI achieving greater lactic acid production under anaerobic conditions (21.93 ± 0.9 g.L−1) and a yield of 69.18 %, while the strain W. ginsengihumi BMI was able to produce 19.79 ± 0.8 g.L−1, with a yield of 70.46 %. CCRD was used with the W. ginsengihumi strain due to the lack of records in the literature on its use for lactic acid production. The carbon and nitrogen sources influenced the response, but the interactions of the variables were nonsignificant (p < 0.05). The response surface analysis indicated that the optimal concentrations of carbon and nitrogen sources were 32.5 and 3.0 g.L−1, respectively, without the need to add sodium acetate to the culture medium, leading to the production of 20.02 ± 0.19 g.L−1, productivity of 0.55 g/L/h after 36 hours of fermentation, and a residual sugar concentration of 12.59 ± 0.51 g.L−1. These results demonstrate the potential of W. ginsengihumi BMI for the production of lactic acid by xylose fermentation since it is carried out at 50 °C, indicating a path for future studies Full article
12 pages, 3473 KiB  
Article
Road Density Shapes Soil Fungal Community Composition in Urban Road Green Space
by Shuhong Luo, Yong Lin, Ruirui Chen, Jigang Han and Yun Liu
Diversity 2025, 17(8), 539; https://doi.org/10.3390/d17080539 (registering DOI) - 31 Jul 2025
Viewed by 68
Abstract
Road density is a key indicator of human activity, causing habitat loss and fragmentation. Soil fungi, essential for ecosystem functioning, are sensitive bioindicators. Yet their responses to road density in urban green spaces are poorly characterized. Here, we analyzed the composition of the [...] Read more.
Road density is a key indicator of human activity, causing habitat loss and fragmentation. Soil fungi, essential for ecosystem functioning, are sensitive bioindicators. Yet their responses to road density in urban green spaces are poorly characterized. Here, we analyzed the composition of the dominant fungal community, examined both the direct and indirect effects of road density on soil fungal communities, and identified specialist species. Focusing on Shanghai, China, a rapidly urbanizing city, we considered both edaphic factor and the road network. Through machine learning and Spearman correlation regression analyses, we quantified the relative importance of road density and edaphic factor in shaping fungal community composition and employed occupancy-specificity modeling to identify specialist taxa. Our results revealed that Ascomycota, Basidiomycota, Zygomycota, Rozellomycota, Chytridiomycota, and Glomeromycota were the dominant phyla, accounting for 93% of the retrieved ITS sequences. Road density was found to be the primary driver of fungal community composition, followed by soil lead and potassium concentrations. Notably, opportunistic pathogens (Acremonium spp.) correlated positively with road density (p < 0.001). Specialist species in high-density areas were primarily pathotrophic fungi, while saprotrophic fungi dominated in low-density areas. These findings highlight the need for urban planning strategies to mitigate the ecological impact of road density. Full article
(This article belongs to the Section Microbial Diversity and Culture Collections)
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