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34 pages, 14879 KB  
Article
Petrogenesis and Tectonic Significance of Early Cretaceous Granites in the Huolin Gol Area, Southern Great Xing’an Range, NE China: Geochronological, Geochemical, and Hf Isotopic Evidence
by Kuo Zhang, Junhui Bi, Hongying Zhou, Hang Chu, Zhongshuai Tian, Jianzhen Geng, Xuliang Qin and Feng Zhang
Minerals 2025, 15(12), 1278; https://doi.org/10.3390/min15121278 - 3 Dec 2025
Viewed by 484
Abstract
Mesozoic granitic rocks are widely developed in the Great Xing’an Range, and determining their emplacement age and genesis is crucial for reconstructing the tectonic-magmatic evolution of Northeast China. This paper reports the petrographic, geochronological, geochemical and zircon Hf isotopic characteristics of granites in [...] Read more.
Mesozoic granitic rocks are widely developed in the Great Xing’an Range, and determining their emplacement age and genesis is crucial for reconstructing the tectonic-magmatic evolution of Northeast China. This paper reports the petrographic, geochronological, geochemical and zircon Hf isotopic characteristics of granites in the Huolin Gol area of the southern Great Xing’an Range to determine the formation age, source nature and geodynamic background of the rocks in this area. Zircon U–Pb dating results show that the granites in the study area were formed in the Early Cretaceous (134–130 Ma), rather than the Late Jurassic as previously thought. The granites have SiO2 contents ranging from 75.02 to 78.53 wt.%, Na2O = 3.55–3.89 wt.%, K2O = 3.98–5.11 wt.%, Na2O/K2O = 0.72–0.97, A/CNK = 1.04–1.14. Their rare earth element (REE) distribution patterns are all right-inclined, with LREE/HREE = 3.89–12.41, (La/Yb)N = 2.39–18.86, Eu/Eu* = 0.02–0.17. Trace element spider diagrams show significant enrichment in Rb, Th, U, K, Pb and LREEs, and depletion in Ba, Nb, Ta, Sr, P, Ti and HREEs. The zircon εHf(t) values range from +6.4 to +15.0, and the two-stage Hf model ages (TDM2) range from 773 to 226 Ma. These characteristics indicate that the granitic rocks belong to the weakly peraluminous high-K calc-alkaline I-type granite, derived from partial melting of newly generated juvenile continental crust materials. Combined with the coeval magmatic associations, spatial distribution patterns, and regional tectonic evolution, we propose that the Early Cretaceous granitic rocks in the study area formed in an active continental margin setting, with their geodynamic mechanism linked to the subduction of the Paleo-Pacific Plate beneath the East Asian continent. Full article
(This article belongs to the Section Mineral Geochemistry and Geochronology)
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18 pages, 2222 KB  
Article
Fabrication and Characterization of Back-Gate and Front-Gate Ge-on-Insulator Transistors for Low-Power Applications
by Yuhui Ren, Jiale Su, Jiahan Ke, Hongxiao Lin, Ben Li, Zhenzhen Kong, Yiwen Zhang, Junhao Du, Renrong Liang, Jun Xu, Xiangliang Duan, Tianyu Dong, Xueyin Su, Tianchun Ye, Xuewei Zhao, Yuanhao Miao and Henry H. Radamson
Electronics 2025, 14(23), 4646; https://doi.org/10.3390/electronics14234646 - 26 Nov 2025
Viewed by 490
Abstract
Germanium (Ge) has long been regarded as a promising channel material, owing to its superior carrier mobility and highly tunable electronic band structure. The new generation of low-power electronics is approaching the formation of fully depleted (FD) transistors on Si-on-insulator (SOl) and Ge-on-insulator [...] Read more.
Germanium (Ge) has long been regarded as a promising channel material, owing to its superior carrier mobility and highly tunable electronic band structure. The new generation of low-power electronics is approaching the formation of fully depleted (FD) transistors on Si-on-insulator (SOl) and Ge-on-insulator (GOl) substrates. In this work, we present a full process of a novel FDGOI transistor formed on a strained GOI with low defect density. This scalable and industry-compatible approach enables the formation of uniform 50 nm thick Ge layers by using spinning wet etch with ultrasmooth surfaces (RMS roughness = 0.262 nm) and a low etch-pit density of ~105 cm−2. Electrical measurements reveal excellent carrier transport properties, with back-gate (BG) transistors achieving mobilities of 550–600 cm2/V·s, while front-gate (FG) devices exhibit sharp switching behavior and steep subthreshold slopes, yielding ION/IOFF ratios up to 105. Temperature-dependent measurements further demonstrate a pronounced enhancement of device performance: the ION/IOFF ratio increases to 106, the subthreshold swing (SS) decreases from 179 mV/dec at room temperature to 137 mV/dec at 120 K, and the threshold-voltage shift with temperature is as low as 1.87 mV/K across the range of 30–300 K. Such behavior highlights the potential of band-gap engineering for precise threshold-voltage control. Taken together, these results establish GOI as a CMOS-compatible material platform and provide a solid technological basis for the development of next-generation low-power transistors beyond conventional CMOS scaling. Full article
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14 pages, 2340 KB  
Article
Decoupling Water Consumption from Economic Growth in Inner Mongolia, China
by Danjun Wang, Yunqi Zhou and Fengwei Wang
Water 2025, 17(21), 3073; https://doi.org/10.3390/w17213073 - 27 Oct 2025
Cited by 1 | Viewed by 718
Abstract
Using economic and water consumption data from Inner Mongolia and its 12 cities (2004–2023), this study employs the Tapio decoupling model to investigate the relationship between water consumption and economic growth. The results show a general shift from weak to strong decoupling across [...] Read more.
Using economic and water consumption data from Inner Mongolia and its 12 cities (2004–2023), this study employs the Tapio decoupling model to investigate the relationship between water consumption and economic growth. The results show a general shift from weak to strong decoupling across the region, with extreme events such as the 2020–2021 pandemic period (decoupling index, DI = 10.31) causing clear disruptions. Regional disparities followed a triple pattern: industrial areas (e.g., Ordos, Baotou) achieved strong decoupling via innovation; agricultural regions (e.g., Tongliao, Bayannur) remained in weak negative decoupling modes due to rigid water demand; and ecologically vulnerable areas (e.g., Alxa League, Xilin Gol) saw high volatility and unsustainable policy effects. Our interpretation of the three patterns highlights the need for region-specific governance. The driving mechanisms mainly include uneven adoption of water-saving technology (e.g., low drip irrigation rates in agriculture), virtual water trade shifting pressures across regions, and climate extremes worsening imbalances. Based on these findings, we recommend differentiated subsidies, regional compensation mechanisms, and adaptive policies to support sustainable water–economy coordination in arid regions. Full article
(This article belongs to the Special Issue Water: Economic, Social and Environmental Analysis)
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31 pages, 7033 KB  
Article
On the Use of the Game of Life to Improve the Performance of Event-Driven Wireless Sensor Networks
by Hugo Ivan Fernandez-Cid, Mario Eduardo Rivero-Angeles, German Tellez-Castillo and Juan Carlos Chimal-Eguia
Mathematics 2025, 13(16), 2561; https://doi.org/10.3390/math13162561 - 10 Aug 2025
Viewed by 818
Abstract
Wireless Sensor Networks are composed of a set of sensors distributed within an area that monitor physical variables of the environment and send back information to a central node. Nodes cannot always remain active since they would swiftly drain the system’s energy. As [...] Read more.
Wireless Sensor Networks are composed of a set of sensors distributed within an area that monitor physical variables of the environment and send back information to a central node. Nodes cannot always remain active since they would swiftly drain the system’s energy. As such, some works have proposed the use of different on/off schemes to monitor the phenomena of interest efficiently but also to conserve energy as much as possible. To this end, the use of on/off protocols has been used before, but has no relation to the characteristics of the monitored events. However, in scenarios where the phenomena to monitor occur in a certain pattern or specific region, the use of more suited techniques to activate the nodes can yield better results. In this sense, we propose the use of cellular automata (CA), based on the Game of Life (GoL), in order to turn the nodes on and off, according to the patterns described by the automata. Cellular automata are discrete models consisting of a lattice or grid of cells in a finite number of states that remain or change into another state following pre-established rules commonly associated with the states of their neighbors. As such, we propose to activate/deactivate the nodes following the natural behavior of the GoL scheme. Since the initial state of the cellular automata directly modifies the pattern evolution of the GoL, we consider several possible patterns that can occur in practical systems in order to prove the effectiveness of our proposal. We evaluate the system performance in terms of successful event report probability and energy consumption, comparing our results to the conventional on/off schemes with a certain probability of nodes being in the on state. With this premise, we think CA is a good alternative to determine the on/off process in WSNs. We compared the system performance of the GoL patterns compared to the classical approach and found the cases where the GoL scheme performs better. Full article
(This article belongs to the Special Issue Advances in Algorithm Theory and Computer Networks)
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15 pages, 2686 KB  
Article
Overexpression of AgDREBA6b Gene Significantly Increases Heat Tolerance in Arabidopsis thaliana
by Fangjie Xie, Shengyan Yang, Zexi Peng, Yonglu Li, Zhenchao Yang and Ruiheng Lv
Agronomy 2025, 15(7), 1565; https://doi.org/10.3390/agronomy15071565 - 27 Jun 2025
Cited by 1 | Viewed by 1052
Abstract
The APETALA2/ethylene response factor (AP2/ERF) is a class of plant-specific transcription factors, among which the dehydration-responsive element-binding protein (DREB) subfamily has been widely reported to enhance plant resistance to abiotic stresses. A high-temperature-related gene, Apium graveolens DREBA6b (AgDREBA6b; accession number: OR727346), was [...] Read more.
The APETALA2/ethylene response factor (AP2/ERF) is a class of plant-specific transcription factors, among which the dehydration-responsive element-binding protein (DREB) subfamily has been widely reported to enhance plant resistance to abiotic stresses. A high-temperature-related gene, Apium graveolens DREBA6b (AgDREBA6b; accession number: OR727346), was previously cloned from a heat-tolerant celery variety. In this study, we transformed this gene into Arabidopsis thaliana using an Agrobacterium rhizogenes-mediated method to explore its function. The results showed that overexpressing AgDREBA6b in Arabidopsis thaliana significantly improved plant growth under high-temperature stress (38 °C) compared to the dreb mutant and wild-type (WT) plants. The anatomical structure of the leaves revealed that the number and degree of stomatal openings in the overexpressed plants were significantly higher than those in the WT and dreb plants, suggesting that AgDREBA6b enhances stomatal opening. Additionally, the chlorophyll content, chlorophyll fluorescence properties, proline (Pro), malondialdehyde (MDA), superoxide dismutase (SOD), catalase (CAT), and peroxidase (POD) activities were higher in the transgenic plants, indicating better stress tolerance. qPCR analysis showed that four heat tolerance-related genes (AtHSP98.7, AtHSP70-1, AtAPX1, and AtGOLS1) were upregulated in the transgenic plants, with higher expression levels than in WT and mutant plants. This study provides valuable genetic resources for understanding the molecular mechanisms of celery’s heat tolerance and offers insights for breeding heat-tolerant celery varieties. Full article
(This article belongs to the Topic Vegetable Breeding, Genetics and Genomics, 2nd Volume)
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28 pages, 14042 KB  
Article
Optimizing Infill Drill Hole Decisions While Capturing the Spatial Continuity of Geochemical and Geometallurgical Properties: Application to Gol Gohar Iron Ore Mine, Iran
by Mohammad Hossein Aghlan, Omid Asghari and Xavier Emery
Minerals 2025, 15(5), 478; https://doi.org/10.3390/min15050478 - 1 May 2025
Cited by 1 | Viewed by 2629
Abstract
This paper addresses the problem of infill drill hole placement for mineral resource estimation and classification. The placement is considered optimal when it maximizes an objective function that accounts for ore grades, mineral resource classes, extraction priorities, and block volumes, where the grade [...] Read more.
This paper addresses the problem of infill drill hole placement for mineral resource estimation and classification. The placement is considered optimal when it maximizes an objective function that accounts for ore grades, mineral resource classes, extraction priorities, and block volumes, where the grade and resource classes are defined on the basis of a set of geostatistical simulations. To expedite the identification of the optimal solution within a condensed timeframe, modifications to the random search (RS) algorithm are introduced, including a partition of the region targeted for drilling and the definition of a maximum distance to existing drill holes. The modified RS divides the study area into smaller areas and examines all these areas to find the optimal solution, in order to reduce the search time and to reach the best possible solution. This approach, furthermore, eliminates the impact of different random starting points and the risk of getting trapped in certain areas of the solution space. Also, the incorporation of a geometallurgical parameter (recovered metal) instead of the ore grade represents an innovation that signifies the consideration of mineral processing perspectives to optimize the drill hole placement. The proposed modified RS algorithm is applied to a dataset from an Iranian iron deposit consisting of 240 exploration drill holes, and resulted in 11% to 21% of the indicated resources being converted into measured resources after locating nine infill drill holes accounting for the iron grade and the recovered metal, respectively. The modified RS also compares favorably to other traditional optimization techniques. Full article
(This article belongs to the Section Mineral Exploration Methods and Applications)
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18 pages, 2707 KB  
Article
Utilizing the Google Earth Engine for an Efficient Spatial–Temporal Fusion Model of Grassland Evapotranspiration (OL-SS)
by Hao Yu, Chunchun An and Zhi Dong
Water 2025, 17(7), 1034; https://doi.org/10.3390/w17071034 - 31 Mar 2025
Viewed by 2408
Abstract
This paper proposes a spatiotemporal fusion-based evapotranspiration inversion model (OL-SS) for grassland areas on the GEE platform. The model uses the OL processing strategy, with Landsat imagery being used as fine-resolution images and MCD43A4 imagery as coarse-resolution images, combined with GEE’s spatiotemporal fusion [...] Read more.
This paper proposes a spatiotemporal fusion-based evapotranspiration inversion model (OL-SS) for grassland areas on the GEE platform. The model uses the OL processing strategy, with Landsat imagery being used as fine-resolution images and MCD43A4 imagery as coarse-resolution images, combined with GEE’s spatiotemporal fusion technology to generate 30 m resolution images. It then estimates the daily evapotranspiration of grasslands using the constant evaporation ratio method. The model was validated in the Xilin Gol League, Inner Mongolia, for grassland evapotranspiration inversion during the summer of 2015. The results show the following: 1. the OL-SS model can efficiently generate good spatiotemporal fusion results, but the fusion effect is poorer in some images due to cloud cover; 2. compared with the measured data from flux stations in grassland areas, the evapotranspiration inversion results show a good fit. The model demonstrates strong performance in grassland evapotranspiration monitoring and is suitable for the rapid estimation of daily evapotranspiration in certain grassland regions. Full article
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21 pages, 6071 KB  
Article
The Combination of Physiological and Transcriptomic Approaches Reveals New Insights into the Molecular Mechanisms of Leymus chinensis Growth Under Different Shading Intensities
by Xinru Li, Qianqian Yu, Zhongxu Yao, Shuo Li, Lichao Ma, Kunlong Su and Guofeng Yang
Int. J. Mol. Sci. 2025, 26(6), 2730; https://doi.org/10.3390/ijms26062730 - 18 Mar 2025
Viewed by 992
Abstract
Leymus chinensis is a grass species in the family Triticeae that is found in the Eurasian grassland region and is known for its outstanding ecological advantages and economic value. However, the increasing adoption of photovoltaic agriculture has modified the light environment for the [...] Read more.
Leymus chinensis is a grass species in the family Triticeae that is found in the Eurasian grassland region and is known for its outstanding ecological advantages and economic value. However, the increasing adoption of photovoltaic agriculture has modified the light environment for the grass, markedly inhibiting its photosynthesis, growth, and yield. This study used physiological and transcriptomic analyses to investigate the complex response mechanisms of two L. chinensis genotypes (Zhongke No. 3 [Lc3] and Zhongke No. 5 [Lc5]) under shading stress. Growth phenotype analysis revealed the superior growth performance of Lc3 under shading stress, evidenced by enhanced plant height and photosynthetic parameters. Additionally, differentially expressed genes (DEGs) were predominantly enriched in starch and sucrose metabolism and glycolysis/gluconeogenesis pathways, which were the most consistently enriched in both L. chinensis genotypes. However, the flavonoid biosynthesis and galactose metabolism pathways were more enriched in Lc3. Weighted gene co-expression network analysis identified the LcGolS2 gene, which encodes galactinol synthase, as a potential hub gene for resistance to shade stress in comparisons across different cultivars and shading treatments. The use of qRT-PCR analysis further validated the genes involved in these pathways, suggesting that they may play critical roles in regulating the growth and development of L. chinensis under shading conditions. These findings provide new insights into the molecular mechanisms underlying the growth and development of L. chinensis under different shading stress conditions. Full article
(This article belongs to the Section Molecular Plant Sciences)
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15 pages, 6578 KB  
Article
Regionalization and Analysis of Precipitation Variations in Inner Mongolia
by Wei Wang and Jiao Guo
Atmosphere 2025, 16(2), 216; https://doi.org/10.3390/atmos16020216 - 14 Feb 2025
Cited by 1 | Viewed by 2165
Abstract
Precipitation data from 104 meteorological stations in Inner Mongolia from 1960 to 2018 were analyzed to examine the regionalization and characteristics of precipitation variations. Using rotated empirical orthogonal function (REOF) analysis and K-means clustering, Inner Mongolia was divided into six precipitation subregions: the [...] Read more.
Precipitation data from 104 meteorological stations in Inner Mongolia from 1960 to 2018 were analyzed to examine the regionalization and characteristics of precipitation variations. Using rotated empirical orthogonal function (REOF) analysis and K-means clustering, Inner Mongolia was divided into six precipitation subregions: the northeastern Hulunbuir area (subregion I); most of Hinggan League, northern Xilin Gol League, and northwestern Tongliao City (subregion II); most of Tongliao City and Chifeng City and east–central and southern Xilin Gol League (subregion III); southern Xilin Gol League, north–central Ulan Chab City, northern Hohhot City, most of Baotou City and north–central Bayannur City (subregion IV); Ordos City, southern Bayannur, and southeastern Alxa League (subregion V); and west–central Alxa League and parts of western Bayannur City (subregion VI). Precipitation showed a spatial gradient with higher annual averages in the east (400.85 mm in subregion I) and lower averages in the west (90.65 mm in subregion VI). From 1960 to 2018, precipitation exhibited an overall increasing trend consistent across the subregions. However, most regions showed decreasing trends from 1990 to 2010. The rate of precipitation change varied significantly across the subregions, reflecting distinct spatial dynamics. Full article
(This article belongs to the Section Meteorology)
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24 pages, 6970 KB  
Article
In Silico Born Designed Anti-EGFR Aptamer Gol1 Has Anti-Proliferative Potential for Patient Glioblastoma Cells
by Andrey Golovin, Fatima Dzarieva, Ksenia Rubetskaya, Dzhirgala Shamadykova, Dmitry Usachev, Galina Pavlova and Alexey Kopylov
Int. J. Mol. Sci. 2025, 26(3), 1072; https://doi.org/10.3390/ijms26031072 - 26 Jan 2025
Cited by 9 | Viewed by 2673
Abstract
The epidermal growth factor receptor (EGFR) is one of the key oncomarkers in glioblastoma (GB) biomedical research. High levels of EGFR expression and mutations have been found in many GB patients, making the EGFR an attractive target for therapeutic treatment. The EGFRvIII mutant [...] Read more.
The epidermal growth factor receptor (EGFR) is one of the key oncomarkers in glioblastoma (GB) biomedical research. High levels of EGFR expression and mutations have been found in many GB patients, making the EGFR an attractive target for therapeutic treatment. The EGFRvIII mutant is the most studied, it is not found in normal cells and is positively associated with tumor cell aggressiveness and poor patient prognosis, not to mention there is a possibility of it being a tumor stem cell marker. Some anti-EGFR DNA aptamers have already been selected, including the aptamer U2. The goal of this study was to construct a more stable derivative of the aptamer U2, while not ruining its functional potential toward cell cultures from GB patients. A multiloop motif in a putative secondary structure of the aptamer U2 was taken as a key feature to design a novel minimal aptamer, Gol1, using molecular dynamics simulations for predicted 3D models. It turned out that the aptamer Gol1 has a similar putative secondary structure, with G-C base pairs providing its stability. The anti-proliferative activities of the aptamer Gol1 were assessed using patient-derived GB continuous cell cultures, G01 and BU881, with different abundances of EGFR and EGFRvIII. The transcriptome data for the cell culture G01, after aptamer Gol1 treatment, revealed significant changes in gene expression; it induced the transcription of genes associated with neurogenesis and cell differentiation, and it decreased the transcription of genes mediating key nuclear processes. There were significant changes in the gene transcription of key pro-oncogenic signaling pathways mediated by the EGFR. Therefore, the aptamer Gol1 could potentially be an efficient molecule for translation into biomedicine, in order to develop targeted therapy for GB patients. Full article
(This article belongs to the Special Issue New Agents and Novel Drugs Use for the Oncological Diseases Treatment)
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17 pages, 2205 KB  
Article
Exploring Metal Cluster Interactions with Functionalized Graphene via Molecular Dynamics Simulation
by Miriam Roldán-Matilla, Arisbel Cerpa-Naranjo and Isabel Lado-Touriño
C 2024, 10(4), 107; https://doi.org/10.3390/c10040107 - 18 Dec 2024
Viewed by 2093
Abstract
This study investigates the interaction between copper (Cu) and silver (Ag) clusters and graphene-based materials using molecular dynamics simulations. It focuses on how graphene oxidation and aminated polyethylene glycol (PEG-NH2) functionalization influence interaction strength and cluster dynamics. The analysis includes pristine [...] Read more.
This study investigates the interaction between copper (Cu) and silver (Ag) clusters and graphene-based materials using molecular dynamics simulations. It focuses on how graphene oxidation and aminated polyethylene glycol (PEG-NH2) functionalization influence interaction strength and cluster dynamics. The analysis includes pristine graphene (PG), low-oxidized graphene oxide (GOL), and PEGylated graphene oxide (GO-PEG-NH2). The results reveal that clusters on PG exhibit high mobility, while GO-PEG-NH2 significantly restricts mobility due to strong interactions, as evidenced by highly negative interaction energies. GO-PEG-NH2 systems also display pronounced subdiffusive behavior (α < 1), indicating strong binding and constrained motion. These findings underscore the critical role of PEG-NH2 functionalization in controlling cluster diffusion, paving the way for innovative designs in biomedical and catalytic nanocarrier applications. Full article
(This article belongs to the Special Issue Carbon Nanohybrids for Biomedical Applications (2nd Edition))
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15 pages, 3309 KB  
Article
Multi-Omics Analysis Provides Insights into Green Soybean in Response to Cold Stress
by Yanhui Lin, Guangping Cao, Jing Xu, Honglin Zhu and Liqiong Tang
Metabolites 2024, 14(12), 687; https://doi.org/10.3390/metabo14120687 - 7 Dec 2024
Cited by 1 | Viewed by 1499
Abstract
Green soybean (Glycine max (L.) Merrill) is a highly nutritious food that is a good source of protein and fiber. However, it is sensitive to low temperatures during the growing season, and enhancing cold tolerance has become a research hotspot for breeding [...] Read more.
Green soybean (Glycine max (L.) Merrill) is a highly nutritious food that is a good source of protein and fiber. However, it is sensitive to low temperatures during the growing season, and enhancing cold tolerance has become a research hotspot for breeding improvement. Background/Objectives: The underlying molecular mechanisms of cold tolerance in green soybean are not well understood. Methods: Here, a comprehensive analysis of transcriptome and metabolome was performed on a cold-tolerant cultivar treated at 10 °C for 24 h. Results: Compared to control groups, we identified 17,011 differentially expressed genes (DEGs) and 129 differentially expressed metabolites (DEMs). The DEGs and DEMs were further subjected to KEGG functional analysis. Finally, 11 metabolites (such as sucrose, lactose, melibiose, and dehydroascorbate) and 17 genes (such as GOLS, GLA, UGDH, and ALDH) were selected as candidates associated with cold tolerance. Notably, the identified metabolites and genes were enriched in two common pathways: ‘galactose metabolism’ and ‘ascorbate and aldarate metabolism’. Conclusions: The findings suggest that green soybean modulates the galactose metabolism and ascorbate and aldarate metabolism pathways to cope with cold stress. This study contributes to a deeper understanding of the complex molecular mechanisms enabling green soybeans to better avoid low-temperature damage. Full article
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15 pages, 8955 KB  
Article
Establishment of Hairy Root Transformation System for Evaluating Stress-Tolerant Gene in Jojoba
by Bojing Li, Yan Wang, Wenguo Ma, Jie Bing, Yijun Zhou, Yuke Gen and Fei Gao
Agriculture 2024, 14(12), 2132; https://doi.org/10.3390/agriculture14122132 - 25 Nov 2024
Cited by 1 | Viewed by 1517
Abstract
Jojoba is an important tropical oil crop, and jojoba oil is widely used in the aerospace lubricant and cosmetic industries. Jojoba exhibits high tolerance to droughts and high temperatures. However, there is currently a lack of rapid and effective methods for identifying stress-tolerant [...] Read more.
Jojoba is an important tropical oil crop, and jojoba oil is widely used in the aerospace lubricant and cosmetic industries. Jojoba exhibits high tolerance to droughts and high temperatures. However, there is currently a lack of rapid and effective methods for identifying stress-tolerant genes in jojoba. Here, an efficient hairy root genetic transformation system of jojoba (Simmondisa chinensis) mediated by Agrobacterium rhizogenes was established and used for the functional evaluation of ScGolS1, a putative stress-tolerant gene. First, using the leaves of jojoba as explants, transgenic jojoba hairy roots carrying the RUBY gene were obtained under sterile conditions using the “soaking co-cultivation method”. Second, we optimized the four conditions affecting hairy root genetic transformations, namely, the strains of A. rhizogenes, co-cultivation under light or dark conditions, the infection time, and the OD600 value of the bacterial suspension. The following best transformation conditions were determined, A. rhizogenes K599, light during co-cultivation, an infection time of 10 min, and bacterial suspension OD600 = 0.6, under which the transformation rate could reach 27%. Third, based on the “soaking co-cultivation method”, a new method called the “wrapping co-cultivation method” was developed, which does not require tissue cultures and can induce transgenic hairy roots of jojoba in two months. Using the “wrapping co-cultivation method”, we successfully obtained transgenic hairy roots overexpressing the ScGolS1 gene, which exhibited higher tolerance to low-temperature stress. A hairy root-based genetic transformation system of jojoba will promote the functional genomics and molecular breeding of jojoba. Full article
(This article belongs to the Section Crop Genetics, Genomics and Breeding)
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19 pages, 4333 KB  
Article
Transcriptome Analysis Reveals Genes Responsive to Three Low-Temperature Treatments in Arabidopsis thaliana
by Bricia Ruiz-Aguilar, Natalia B. Torres-Serrallonga, María Azucena Ortega-Amaro, Arianna Duque-Ortiz, Cesaré Ovando-Vázquez and Juan Francisco Jiménez-Bremont
Plants 2024, 13(22), 3127; https://doi.org/10.3390/plants13223127 - 6 Nov 2024
Cited by 3 | Viewed by 3049
Abstract
Cold stress impedes the growth and development of plants, restricts the geographical distribution of plant species, and impacts crop productivity. In this study, we analyzed the Arabidopsis thaliana transcriptome to identify differentially expressed genes (DEGs) in 14-day-old plantlets exposed to temperatures of 0 [...] Read more.
Cold stress impedes the growth and development of plants, restricts the geographical distribution of plant species, and impacts crop productivity. In this study, we analyzed the Arabidopsis thaliana transcriptome to identify differentially expressed genes (DEGs) in 14-day-old plantlets exposed to temperatures of 0 °C, 4 °C, and 10 °C for 24 h, compared to the 22 °C control group. Among the top 50 cold-induced genes at each temperature, we identified 31 genes that were common across all three low temperatures, with nine genes common to 0–4 °C, eight genes to 4–10 °C, and two genes to 0–10 °C. Using q-RTPCR, we analyzed selected genes at 24, 48, and 72 h under the three low temperatures. Our data revealed that genes, such as galactinol synthase 3 (Gols3, At1g09350), CIR1 (At5g37260), DnaJ (At1g71000), and At5g05220 (unknown function), exhibited the highest expressions at 0 °C and 4 °C throughout all time points. We also studied genes from the UDP-glycosyltransferase (UGT78) family, including At5g17030 (D3), At5g17040 (D4), At5g17050 (D2), and At1g30530 (D1), which showed increased expression at low temperatures compared to plantlets at 22 °C for 24 h. Gene ontology analysis revealed that DEGs highly enriched were found in biological processes such as “RNA secondary structure unwinding” and “rRNA processing” induced at the three low temperatures, whereas processes related to photosynthesis were repressed. Our findings indicated upregulation in the expression of four RNA helicases (RH13, RH48, RH32, and RH29), belonging to the “RNA secondary structure unwinding” category, mainly at 0 °C and 4 °C. This study provides valuable information on the molecular mechanisms that activate Arabidopsis thaliana in its early response to these three low temperatures. Full article
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14 pages, 4102 KB  
Article
The Role of PLATZ6 in Raffinose Family Oligosaccharides Loading of Leaves via PLATZ Family Characterization in Cucumber
by Peiqi Wang, Haofeng Teng, Dan Qiao, Fei Liang, Kaikai Zhu, Minmin Miao and Bing Hua
Plants 2024, 13(19), 2825; https://doi.org/10.3390/plants13192825 - 9 Oct 2024
Cited by 3 | Viewed by 1606
Abstract
The plant AT protein and zinc-binding protein (PLATZ) genes, a novel cluster of plant-specific zinc-finger-dependent DNA-binding proteins, play a crucial role in regulating stress response and plant development. However, there has been little study focus on the role of the cucumber [...] Read more.
The plant AT protein and zinc-binding protein (PLATZ) genes, a novel cluster of plant-specific zinc-finger-dependent DNA-binding proteins, play a crucial role in regulating stress response and plant development. However, there has been little study focus on the role of the cucumber PLATZ family in assimilating loading in leaves. (1) In this study, a total of 12 PLATZ genes were identified from the cucumber genome. The cucumber PLATZ genes were clustered into five groups, and unevenly distributed on five chromosomes. A single pair of cucumber PLATZ genes underwent segmental duplication. (2) The results of genome-wide expression analysis suggested that the cucumber PLATZ genes were widely expressed in a wide range of cucumber tissues, with three PLATZ (PLATZ2, PLATZ6, and PLATZ12) genes exhibiting high expression in the vascular tissues of cucumber leaves. PLATZ2, PLATZ6, and PLATZ12 proteins were primarily located in cytomembrane and nucleus. (3) In VIGS-PLATZ6 plants, the expression of Galactinol synthase 1 (GolS1) and STACHYOSE SYNTHASE (STS), two genes involved in the synthesis of raffinose family oligosaccharides (RFOs) were observed to be decreased in cucumber leaves. In conclusion, the comprehensive analysis of the cucumber PLATZ family and the preliminary functional verification of PLATZ6 lay the foundation for the molecular and physiological functions of cucumber PLATZ genes. Full article
(This article belongs to the Special Issue Abiotic Stress Responses in Plants)
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