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Keywords = GLC-LC100

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16 pages, 1702 KiB  
Article
Does Salt Form Matter? A Pilot Randomized, Double-Blind, Crossover Pharmacokinetic Comparison of Crystalline and Regular Glucosamine Sulfate in Healthy Volunteers
by Chuck Chang, Afoke Ibi, Yiming Zhang, Min Du, Yoon Seok Roh, Robert O’Brien and Julia Solnier
Nutrients 2025, 17(15), 2491; https://doi.org/10.3390/nu17152491 - 30 Jul 2025
Viewed by 196
Abstract
Background: Crystalline glucosamine sulfate (cGS) claims to be a stabilized form of glucosamine sulfate with a defined crystalline structure intended to enhance chemical stability. It is proposed to offer pharmacokinetic advantages over regular glucosamine sulfate (rGS) which is stabilized with potassium or [...] Read more.
Background: Crystalline glucosamine sulfate (cGS) claims to be a stabilized form of glucosamine sulfate with a defined crystalline structure intended to enhance chemical stability. It is proposed to offer pharmacokinetic advantages over regular glucosamine sulfate (rGS) which is stabilized with potassium or sodium chloride. However, comparative human bioavailability data are limited. Since both forms dissociate in gastric fluid into constituent ions, the impact of cGS formulation on absorption remains uncertain. This pilot study aimed to compare the bioavailability of cGS and rGS using a randomized, double-blind, crossover design. Methods: Ten healthy adults received a single 1500 mg oral dose of either cGS or rGS with a 7-day washout between interventions. Capillary blood samples were collected over 24 h. Glucosamine and its metabolite concentrations were quantified by Liquid Chromatography-High Resolution Mass Spectrometry (LC-HRMS), and pharmacokinetic parameters—including maximum concentration (Cmax), time to reach Cmax (Tmax), and area under the curve (AUC)—were calculated. Results: Mean AUC0–24, Cmax, Tmax, and T½ values for glucosamine and glucosamine-6-sulfate (GlcN-6-S) were comparable between cGS and rGS. Although the AUC0–24 for glucosamine was modestly higher with rGS (18,300 ng·h/mL) than with cGS (12,900 ng·h/mL), the difference was not statistically significant (p = 0.136). GlcN-6-S exposure was also similar between formulations (rGS: 50,700 ng·h/mL; cGS: 50,600 ng·h/mL), with a geometric mean ratio of 1.39, a delayed Tmax (6–8 h) and longer half-life, consistent with its role as a downstream metabolite. N-acetylglucosamine levels remained stable, indicating potential homeostatic regulation. Conclusions: This pilot study found no significant pharmacokinetic advantage of cGS over rGS. These preliminary findings challenge claims of cGS’ pharmacokinetic superiority, although the small sample size limits definitive conclusions. Larger, adequately powered studies are needed to confirm these results. Full article
(This article belongs to the Special Issue Bone-Health-Promoting Bioactive Nutrition)
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22 pages, 3771 KiB  
Article
Integrated Transcriptome and Metabolome Analyses Uncover Cholesterol-Responsive Gene Networks
by Ruihao Zhang, Qi Sun, Lixia Huang and Jian Li
Int. J. Mol. Sci. 2025, 26(15), 7108; https://doi.org/10.3390/ijms26157108 - 23 Jul 2025
Viewed by 316
Abstract
Cholesterol stress profoundly modulates cellular processes, but its underlying mechanisms remain incompletely understood. To investigate cholesterol-responsive networks, we performed integrated transcriptome (RNA-seq) and metabolome (LC-MS) analyses on HeLa cells treated with cholesterol for 6 and 24 h. Through transcriptomic analysis of cholesterol-stressed HeLa [...] Read more.
Cholesterol stress profoundly modulates cellular processes, but its underlying mechanisms remain incompletely understood. To investigate cholesterol-responsive networks, we performed integrated transcriptome (RNA-seq) and metabolome (LC-MS) analyses on HeLa cells treated with cholesterol for 6 and 24 h. Through transcriptomic analysis of cholesterol-stressed HeLa cells, we identified stage-specific responses characterized by early-phase stress responses and late-phase immune-metabolic coordination. This revealed 1340 upregulated and 976 downregulated genes after a 6 h cholesterol treatment, including induction and suppression of genes involved in cholesterol efflux and sterol biosynthesis, respectively, transitioning to Nuclear Factor kappa-B (NF-κB) activation and Peroxisome Proliferator-Activated Receptor (PPAR) pathway modulation by 24 h. Co-expression network analysis prioritized functional modules intersecting with differentially expressed genes. We also performed untargeted metabolomics using cells treated with cholesterol for 6 h, which demonstrated extensive remodeling of lipid species. Interestingly, integrated transcriptomic and metabolic analysis uncovered GFPT1-driven Uridine Diphosphate-N-Acetylglucosamine (UDP-GlcNAc) accumulation and increased taurine levels. Validation experiments confirmed GFPT1 upregulation and ANGPTL4 downregulation through RT-qPCR and increased O-GlcNAcylation via Western blot. Importantly, clinical datasets further supported the correlations between GFPT1/ANGPTL4 expression and cholesterol levels in Non-Alcoholic Steatohepatitis (NASH) liver cancer patients. This work establishes a chronological paradigm of cholesterol sensing and identifies GFPT1 and ANGPTL4 as key regulators bridging glycosylation and lipid pathways, providing mechanistic insights into cholesterol-associated metabolic disorders. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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24 pages, 2320 KiB  
Article
Glucoselipid Biosurfactant Biosynthesis Operon of Rouxiella badensis DSM 100043T: Screening, Identification, and Heterologous Expression in Escherichia coli
by Andre Fahriz Perdana Harahap, Chantal Treinen, Leonardo Joaquim Van Zyl, Wesley Trevor Williams, Jürgen Conrad, Jens Pfannstiel, Iris Klaiber, Jakob Grether, Eric Hiller, Maliheh Vahidinasab, Elvio Henrique Benatto Perino, Lars Lilge, Anita Burger, Marla Trindade and Rudolf Hausmann
Microorganisms 2025, 13(7), 1664; https://doi.org/10.3390/microorganisms13071664 - 15 Jul 2025
Viewed by 390
Abstract
Rouxiella badensis DSM 100043T had been previously proven to produce a novel glucoselipid biosurfactant which has a very low critical micelle concentration (CMC) as well as very good stability against a wide range of pH, temperature, and salinity. In this study, we [...] Read more.
Rouxiella badensis DSM 100043T had been previously proven to produce a novel glucoselipid biosurfactant which has a very low critical micelle concentration (CMC) as well as very good stability against a wide range of pH, temperature, and salinity. In this study, we performed a function-based library screening from a R. badensis DSM 100043T genome library to identify responsible genes for biosynthesis of this glucoselipid. The identified open reading frames (ORFs) were cloned into several constructs in Escherichia coli for gene permutation analysis and the individual products were analyzed using high-performance thin-layer chromatography (HPTLC). Products of interest from positive expression strains were purified and analyzed by liquid chromatography/electrospray ionization tandem mass spectrometry (LC-ESI-MS/MS) and nuclear magnetic resonance (NMR) for further structure elucidation. Function-based screening of 5400 clones led to the identification of an operon containing three ORFs encoding acetyltransferase GlcA (ORF1), acyltransferase GlcB (ORF2), and phosphatase/HAD GlcC (ORF3). E. coli pCAT2, with all three ORFs, resulted in the production of identical R. badensis DSM 100043T glucosedilipid with Glu-C10:0-C12:1 as the main congener. ORF2-deletion strain E. coli pAFP1 primarily produced glucosemonolipids, with Glu-C10:0,3OH and Glu-C12:0 as the major congeners, predominantly esterified at the C-2 position of the glucose moiety. Furthermore, fed-batch bioreactor cultivation of E. coli pCAT2 using glucose as the carbon source yielded a maximum glucosedilipid titer of 2.34 g/L after 25 h of fermentation, which is 55-fold higher than that produced by batch cultivation of R. badensis DSM 100043T in the previous study. Full article
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32 pages, 2714 KiB  
Article
Comparative Potential of Chitinase and Chitosanase from the Strain Bacillus thuringiensis B-387 for the Production of Antifungal Chitosan Oligomers
by Gleb Aktuganov, Alexander Lobov, Nailya Galimzianova, Elena Gilvanova, Lyudmila Kuzmina, Polina Milman, Alena Ryabova, Alexander Melentiev, Sergey Chetverikov, Sergey Starikov and Sergey Lopatin
BioTech 2025, 14(2), 35; https://doi.org/10.3390/biotech14020035 - 8 May 2025
Cited by 1 | Viewed by 3784
Abstract
The depolymerization of chitosan using chitinolytic enzymes is one of the most promising approaches for the production of bioactive soluble chitooligosaccharides (COS) due to its high specificity, environmental safety, mild reaction conditions, and potential for development. However, the comparative efficacy of bacterial chitinases [...] Read more.
The depolymerization of chitosan using chitinolytic enzymes is one of the most promising approaches for the production of bioactive soluble chitooligosaccharides (COS) due to its high specificity, environmental safety, mild reaction conditions, and potential for development. However, the comparative efficacy of bacterial chitinases and chitosanases in terms of yield, solubility, and antimicrobial activity of produced COS remains understudied. In this work, chitinase (73 kDa) and chitosanase (40 kDa) from the strain Bacillus thuringiensis B-387 (Bt-387) were purified using various chromatographic techniques and compared by their action on chitosan (DD 85%). The molecular mass and structure of generated COS was determined using TLC, LC-ESI-MS, HP-SEC, and C13-NMR techniques. Chitosanase converted the polymer more rapidly to short COS (GlcN2-GlcN4), than chitinase, and was more specific in its action on mixed bonds between GlcN and GlcNAc. Chitosanase needed a noticeably shorter incubation time and enzyme–substrate ratio than chitinase for production of larger oligomeric molecules (Mw 2.4–66.5 and 15.4–77.7 kDa, respectively) during controlled depolymerization of chitosan. Moreover, chitosanase-generated oligomers demonstrate better solubility and a higher antifungal activity in vitro against the tested plant pathogenic fungi. These features, as well as the high enzyme production and its simplified purification protocol, make chitosanase B-387 more suitable for the production of antifungal chitooligomers than chitinase. Full article
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27 pages, 10450 KiB  
Article
A Comparison of Recent Global Time-Series Land Cover Products
by Peilin Li, Yan Wang, Chisheng Wang, Lin Tian, Meijiao Lin, Siyao Xu and Chuanhua Zhu
Remote Sens. 2025, 17(8), 1417; https://doi.org/10.3390/rs17081417 - 16 Apr 2025
Cited by 1 | Viewed by 675
Abstract
Accurate and reliable land cover data are essential for environmental monitoring, climate research, and sustainable land management. However, the proliferation of multi-source global land cover datasets with long time series poses challenges for selecting the best products for specific applications. Existing assessments often [...] Read more.
Accurate and reliable land cover data are essential for environmental monitoring, climate research, and sustainable land management. However, the proliferation of multi-source global land cover datasets with long time series poses challenges for selecting the best products for specific applications. Existing assessments often lack systematic comparisons of classification accuracy and time consistency across geographic areas. This study addresses the critical gap in cross-product comparability by systematically comparing five recent global time-series land cover products (GLC_FCS30D, Esri Land Cover, MCD12Q1, ESA CCI, and Dynamic World) against a reference dataset (CGLS-LC100). Through a unified classification system, resolution resampling, and random sampling validation, we assessed their classification accuracy and time-series change accuracy across three transitional regions representing diverse environmental contexts: rapidly urbanizing regions, agriculturally intensive zones, and high-latitude forested areas. The results indicate that while datasets exhibit spatial consistency, significant discrepancies exist in land cover classification, with each dataset demonstrating varying levels of accuracy depending on the environmental context and land cover type. High-resolution products (e.g., GLC_FCS30D, Dynamic World) are optimal for monitoring fragmented landscapes and urban expansion, whereas long-term datasets (e.g., ESA CCI, MCD12Q1) suit climate trend analysis in stable ecosystems. Based on the evaluation, we provide generalized guidance for dataset selection aligned with land cover types and monitoring objectives, emphasizing the need for region-specific and application-oriented choices. This study highlights challenges in dynamic datasets, including classification system discrepancies, resolution effects, and reference data limitations, and suggests that future advancements should focus on improving classification algorithms, refining sampling methods, and developing assessment systems that incorporate high-precision, real-time validation data. Full article
(This article belongs to the Section Remote Sensing in Geology, Geomorphology and Hydrology)
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18 pages, 3733 KiB  
Article
Exploring the Potential Effectiveness of Croton tiglium Oil and Its Nano-Emulsion on Earias insulana (Lepidoptera: Nolidae)
by Karima S. Khater, Marwa M. Abd-Elrhmman, Zeinab M. E. A. Said, Ali A. El-Sayed, Abdelhadi A. I. Ali, Lamya Ahmed Alkeridis, Laila A. Al-Shuraym, Jingwen Wang, Qichun Zhang and Ahmed A. A. Aioub
Insects 2025, 16(1), 72; https://doi.org/10.3390/insects16010072 - 12 Jan 2025
Viewed by 1629
Abstract
Earias insulana Boisd. (Lepidoptera: Nolidae) is a major pest of cotton and other crops in Egypt, and the widespread use of insecticides has led to resistance. This study evaluates, for the first time, the bioactivity of Croton tiglium (Malpighiales: Euphorbiaceae) oil and its [...] Read more.
Earias insulana Boisd. (Lepidoptera: Nolidae) is a major pest of cotton and other crops in Egypt, and the widespread use of insecticides has led to resistance. This study evaluates, for the first time, the bioactivity of Croton tiglium (Malpighiales: Euphorbiaceae) oil and its nano-emulsion (CTNE) against 25 newly hatched larvae of E. insulana Boisd. We assessed their biological effects across different developmental stages and performed histological and ultrastructural examinations. Gas–liquid chromatography (GLC) identified several bioactive compounds in C. tiglium oil crushed dry seeds, including fatty acids, hydrocarbons, and sterols. CTNE showed excellent quality with a zeta potential of −17.7 mV, an average particle size of 54.28 nm, and spherical droplets of 42.42 nm in diameter. The LC50 values for C. tiglium oil and CTNE were 9.02% and 2.70%, respectively. Both treatments significantly impacted the biological characteristics of E. insulana Boisd., including reduced larval and pupal weight, lower adult emergence, decreased fecundity, and increased mortality. Histologically, there was epithelial cell hypotrophy and detachment, while ultrastructural damage included chromatin condensation, nuclear envelope folding, and mitochondrial damage, indicating apoptotic degeneration. These findings suggest C. tiglium oil and CTNE as potential, safe alternatives to chemical insecticides. Full article
(This article belongs to the Special Issue Natural Metabolites as Biocontrol Agents of Insect Pests)
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15 pages, 6275 KiB  
Article
O-GlcNAcylation of Focal Adhesion Kinase Regulates Cell Adhesion, Migration, and Proliferation via the FAK/AKT Pathway
by Zhiwei Zhang, Tomoya Isaji, Yoshiyuki Oyama, Jianwei Liu, Zhiwei Xu, Yuhan Sun, Tomohiko Fukuda, Haojie Lu and Jianguo Gu
Biomolecules 2024, 14(12), 1577; https://doi.org/10.3390/biom14121577 - 10 Dec 2024
Cited by 2 | Viewed by 1638
Abstract
Focal Adhesion Kinase (FAK) is a non-receptor tyrosine kinase pivotal in cellular signal transduction, regulating cell adhesion, migration, growth, and survival. However, the regulatory mechanisms of FAK during tumorigenesis and progression still need to be fully understood. Our previous study demonstrated that O [...] Read more.
Focal Adhesion Kinase (FAK) is a non-receptor tyrosine kinase pivotal in cellular signal transduction, regulating cell adhesion, migration, growth, and survival. However, the regulatory mechanisms of FAK during tumorigenesis and progression still need to be fully understood. Our previous study demonstrated that O-GlcNAcylation regulates integrin-mediated cell adhesion. To further elucidate the underlying molecular mechanism, we focused on FAK in this study and purified it from 293T cells. Using liquid chromatography–mass spectrometry (LC-MS/MS), we identified the O-GlcNAcylation of FAK at Ser708, Thr739, and Ser886. Compared with wild-type FAK expressed in FAK-knockout 293T cells, the FAK mutant, in which Ser708, Thr739, and Ser886 were replaced with Ala, exhibited lower phosphorylation levels of Tyr397 and AKT. Cell proliferation and migration, assessed through MTT and wound healing assays, were significantly suppressed in the FAK mutant cells compared to the wild-type FAK cells. Additionally, the interaction among FAK, paxillin, and talin was enhanced, and cell adhesion was increased in the mutant cells. These data indicate that specific O-GlcNAcylation of FAK plays a critical regulatory role in integrin-mediated cell adhesion and migration. This further supports the idea that O-GlcNAcylation is essential for tumorigenesis and progression and that targeting the O-GlcNAcylation of FAK could offer a promising therapeutic strategy for cancer treatment. Full article
(This article belongs to the Section Biomacromolecules: Carbohydrates)
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21 pages, 2580 KiB  
Article
p53 and the E3 Ubiquitin Ligase MDM2 in Glaucomatous Lamina Cribrosa Cells
by Kealan McElhinney, Mustapha Irnaten, Jeffrey O’Callaghan and Colm O’Brien
Int. J. Mol. Sci. 2024, 25(22), 12173; https://doi.org/10.3390/ijms252212173 - 13 Nov 2024
Viewed by 1052
Abstract
Lamina cribrosa (LC) cells play an integral role in extracellular matrix remodeling and fibrosis in human glaucoma. LC cells bear similarities to myofibroblasts that adopt an apoptotic-resistant, proliferative phenotype, a process linked to dysregulation of tumor suppressor-gene p53 pathways, including ubiquitin-proteasomal degradation via [...] Read more.
Lamina cribrosa (LC) cells play an integral role in extracellular matrix remodeling and fibrosis in human glaucoma. LC cells bear similarities to myofibroblasts that adopt an apoptotic-resistant, proliferative phenotype, a process linked to dysregulation of tumor suppressor-gene p53 pathways, including ubiquitin-proteasomal degradation via murine-double-minute-2 (MDM2). Here, we investigate p53 and MDM2 in glaucomatous LC cells. Primary human LC cells were isolated from glaucomatous donor eyes (GLC) and age-matched normal controls (NLC) (n = 3 donors/group). LC cells were cultured under standard conditions ± 48-h treatment with p53-MDM2-interaction inhibitor RG-7112. Markers of p53-MDM2, fibrosis, and apoptosis were analyzed by real-time polymerase chain reaction (qRT-PCR), western blotting, and immunofluorescence. Cellular proliferation and viability were assessed using colorimetric methyl-thiazolyl-tetrazolium salt assays (MTS/MTT). In GLC versus NLC cells, protein expression of p53 was significantly decreased (p < 0.05), MDM2 was significantly increased, and immunofluorescence showed reduced p53 and increased MDM2 expression in GLC nuclei. RG-7112 treatment significantly increased p53 and significantly decreased MDM2 gene and protein expression. GLC cells had significantly increased protein expression of αSMA, significantly decreased caspase-3 protein expression, and significantly increased proliferation after 96 h. RG-7112 treatment significantly decreased COL1A1 and αSMA, significantly increased BAX and caspase-3 gene expression, and significantly decreased proliferation in GLC cells. MTT-assay showed equivocal cellular viability in NLC/GLC cells with/without RG-7112 treatment. Our data suggests that proliferation and the ubiquitin-proteasomal pathway are dysregulated in GLC cells, with MDM2-led p53 protein degradation negatively impacting its protective role. Full article
(This article belongs to the Special Issue Epigenetic Control of Apoptosis)
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20 pages, 2215 KiB  
Article
The Role of αvβ3 Integrin in Lamina Cribrosa Cell Mechanotransduction in Glaucoma
by Mustapha Irnaten, Ellen Gaynor and Colm O’Brien
Cells 2024, 13(17), 1487; https://doi.org/10.3390/cells13171487 - 5 Sep 2024
Cited by 2 | Viewed by 1933
Abstract
Purpose: Glaucoma, one of the leading causes of irreversible blindness, is a common progressive optic neuropathy characterised by visual field defects and structural changes to the optic nerve head (ONH). There is extracellular matrix (ECM) accumulation and fibrosis of the lamina cribrosa (LC) [...] Read more.
Purpose: Glaucoma, one of the leading causes of irreversible blindness, is a common progressive optic neuropathy characterised by visual field defects and structural changes to the optic nerve head (ONH). There is extracellular matrix (ECM) accumulation and fibrosis of the lamina cribrosa (LC) in the ONH, and consequently increased tissue stiffness of the LC connective tissue. Integrins are cell surface proteins that provide the key molecular link connecting cells to the ECM and serve as bidirectional sensors transmitting signals between cells and their environment to promote cell adhesion, proliferation, and remodelling of the ECM. Here, we investigated the expression of αVβ3 integrin in glaucoma LC cell, and its effect on stiffness-induced ECM gene transcription and cellular proliferation rate in normal (NLC) and glaucoma (GLC) LC cells, by down-regulating αVβ3 integrin expression using cilengitide (a known potent αVβ3 and αVβ5 inhibitor) and β3 integrin siRNA knockdown. Methods: GLC cells were compared to age-matched controls NLC to determine differential expression levels of αVβ3 integrin, ECM genes (Col1A1, α-SMA, fibronectin, vitronectin), and proliferation rates. The effects of αVβ3 integrin blockade (with cilengitide) and silencing (with a pool of four predesigned αVβ3 integrin siRNAs) on ECM gene expression and proliferation rates were evaluated using both reverse transcription quantitative polymerase chain reaction (RT-qPCR) and Western blotting in the human NLC cells cultured on soft (4 kPa) and stiff (100 kPa) substrate and in GLC cells grown on standard plastic plates. Results: αVβ3 integrin gene and protein expression were enhanced (p < 0.05) in GLC cells as compared to NLC. Both cilengitide and siRNA significantly reduced αVβ3 expression in GLC. When NLC were grown in the stiff substrate, cilengitide and siRNA also significantly reduced the increased expression in αVβ3, ECM components, and proliferation rate. Conclusions: Here, we provide evidence of cilengitide- and siRNA-mediated silencing of αVβ3 integrin expression, and inhibition of ECM synthesis in LC cells. Therefore, αVβ3 integrin may be a promising target for the development of novel anti-fibrotic therapies for treating the LC cupping of the ONH in glaucoma. Full article
(This article belongs to the Special Issue Fibrosis in Chronic Inflammatory Diseases)
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25 pages, 12201 KiB  
Article
Spatial Consistency and Accuracy Analysis of Multi-Source Land Cover Products on the Southeastern Tibetan Plateau, China
by Binghua Zhang, Linshan Liu, Yili Zhang, Bo Wei, Dianqing Gong and Lanhui Li
Remote Sens. 2024, 16(17), 3219; https://doi.org/10.3390/rs16173219 - 30 Aug 2024
Cited by 2 | Viewed by 1570
Abstract
Land cover products provide the key inputs for terrestrial change monitoring and modeling. Numerous land cover products have been generated in the past few decades, but their performance on the southeastern Tibetan Plateau remains unclear. This study analyzed 15 land cover products for [...] Read more.
Land cover products provide the key inputs for terrestrial change monitoring and modeling. Numerous land cover products have been generated in the past few decades, but their performance on the southeastern Tibetan Plateau remains unclear. This study analyzed 15 land cover products for consistency through compositional similarity and overlay analyses. Additionally, 1305 validation samples from four datasets were employed to construct confusion matrices to evaluate their accuracy. The results indicate the following: (1) Land cover products exhibit relatively high consistency in 62.92% of the region. (2) Land cover products are strongly influenced by terrain fluctuations, showing lower consistency at elevation below 200 m and instability in land cover classification with increasing elevation, particularly between 2800–4400 m and 4800–5400 m. (3) The accuracy for forest, water, and snow/ice is relatively high. However, there is a relatively lower accuracy for wetland and shrubland, necessitating more field samples for reference to improve classification. (4) The average values of the four validation datasets show that the overall accuracy of the 15 products ranges from 50.97% to 73.50%. For broad-scale studies with lower resolution requirements, the CGLS-LC100 product can be considered. For studies requiring a finer scale, a combination of multiple land cover products should be utilized. ESRI is recommended as a reference for built-up land, while FROM-GLC30 can be used for cropland, although misclassification issues should be noted. This study provides valuable insights for analyzing land cover types on plateaus to refine classification. It also offers guidance for selecting suitable land cover products for future research in this region. Full article
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12 pages, 4463 KiB  
Article
Structural Analyses of Polysaccharides Extracted from Cyanobacterial Extracellular Gels and Oriented Liquid Crystalline Microfiber Processing by Poly(vinyl alcohol)-Assisted Electrospinning
by Chizu Mitani, Maiko Okajima, Tomomi Ohashira, Mohammad Asif Ali, Toshiaki Taniike and Tatsuo Kaneko
Gels 2024, 10(5), 321; https://doi.org/10.3390/gels10050321 - 7 May 2024
Cited by 1 | Viewed by 1827
Abstract
Sacran is a supergiant cyanobacterial polysaccharide that forms mesogenic supercoil rods that exhibit liquid crystalline (LC) gels at deficient concentrations of around 0.5 wt%, and has several bioactive stimuli-responsive functions. Here, we attempted to form oriented microfibers of sacran by electrospinning, following structural [...] Read more.
Sacran is a supergiant cyanobacterial polysaccharide that forms mesogenic supercoil rods that exhibit liquid crystalline (LC) gels at deficient concentrations of around 0.5 wt%, and has several bioactive stimuli-responsive functions. Here, we attempted to form oriented microfibers of sacran by electrospinning, following structural analyses of the sacran rods. A heterogeneous acid-hydrolysis method using a protonated cation-exchange resin was adopted to examine the short-time exposition of concentrated acid to sacran rods. From the supernatant, the oligomeric fraction that was soluble in water and methanol was isolated. The oligomeric fraction had a main sugar ratio of α-Glc:β-Glc:α-Xyl:β-Xyl:α-Rha of 2:5:1.5:1.5:4 (Glc:Xyl:Rha = 7 (=4 + 3):3:4), and it was speculated that the sacran structure includes rhamnoglucan and xyloglucan (4:3), which are generally rigid enough to exhibit LC. To make oriented microfibers of LC sacran, solubility testing was performed on sacran to find good new solvents of polyhydroxy alcohols such as ethylene glycol, 1,2-propanediol, and glycerol. The oriented film was prepared from a sacran aqueous solution where calcium compound particles deposited on the film are different from polyhydroxy alcohol solutions. Although sacran could not form microfibers by itself, polymer composite microfibers of sacran with poly(vinyl alcohol) were prepared by electrospinning. Cross-polarizing microscopy revealed the molecular orientation of the microfibers. Full article
(This article belongs to the Special Issue Stimuli-Responsive Composite Gels)
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23 pages, 5507 KiB  
Article
Comparison and Evaluation of Five Global Land Cover Products on the Tibetan Plateau
by Yongjie Pan, Danyun Wang, Xia Li, Yong Liu and He Huang
Land 2024, 13(4), 522; https://doi.org/10.3390/land13040522 - 14 Apr 2024
Cited by 3 | Viewed by 2050
Abstract
The Tibetan Plateau (TP) region contains maximal alpine grassland ecology at the mid-latitudes. This region is also recognized as an ecologically fragile and sensitive area under the effects of global warming. Regional climate modeling and ecosystem research depend on accurate land cover (LC) [...] Read more.
The Tibetan Plateau (TP) region contains maximal alpine grassland ecology at the mid-latitudes. This region is also recognized as an ecologically fragile and sensitive area under the effects of global warming. Regional climate modeling and ecosystem research depend on accurate land cover (LC) information. In order to obtain accurate LC information over the TP, the reliability and precision of five moderate/high-resolution LC products (MCD12Q1, C3S-LC, GlobeLand30, GLC_FCS30, and ESA2020 in 2020) were analyzed and evaluated in this study. The different LC products were compared with each other in terms of areal/spatial consistency and assessed with four reference sample datasets (Geo-Wiki, GLCVSS, GOFC-GOLD, and USGS) using the confusion matrix method for accuracy evaluation over the TP. Based on the paired comparison of these five LC datasets, all five LC products show that grass is the major land cover type on the TP, but the range of grass coverage identified by the different products varies noticeably, from 43.35% to 65.49%. The fully consistent spatial regions account for 43.72% of the entire region of the TP, while, in the transition area between grass and bare soil, there is still a large area of medium-to-low consistency. In addition, a comparison of LC datasets using integrated reference datasets shows that the overall accuracies of MCD12Q1, C3S-LC, GlobeLand30, GLC_FCS30, and ESA2020 are 54.29%, 49.32%, 53.03%, 53.73%, and 60.11%, respectively. The producer accuracy of the five products is highest for grass, while glaciers have the most reliable and accurate characteristics among all LC products for users. These findings provide valuable insights for the selection of rational and appropriate LC datasets for studying land-atmosphere interactions and promoting ecological preservation in the TP. Full article
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19 pages, 17244 KiB  
Article
Comparison and Validation of Multiple Medium- and High-Resolution Land Cover Products in Southwest China
by Xiangyu Ji, Xujun Han, Xiaobo Zhu, Yajun Huang, Zengjing Song, Jinghan Wang, Miaohang Zhou and Xuemei Wang
Remote Sens. 2024, 16(6), 1111; https://doi.org/10.3390/rs16061111 - 21 Mar 2024
Cited by 5 | Viewed by 2247
Abstract
The rapid advancement of remote sensing technology has given rise to numerous global- and regional-scale medium- to high-resolution land cover (LC) datasets, making significant contributions to the exploration of worldwide environmental shifts and the sustainable governance of natural resources. Nonetheless, owing to the [...] Read more.
The rapid advancement of remote sensing technology has given rise to numerous global- and regional-scale medium- to high-resolution land cover (LC) datasets, making significant contributions to the exploration of worldwide environmental shifts and the sustainable governance of natural resources. Nonetheless, owing to the inherent uncertainties embedded within remote sensing imagery, LC datasets inevitably exhibit inaccuracies. In this study, a local accuracy assessment of LC datasets in Southwest China was conducted. The datasets utilized in our analysis include ESA WorldCover, CLCD, Esri Land Cover, CRLC, FROM-GLC10, GLC_FCS30, GlobeLand30, and SinoLC-1. This study employed a sampling approach that combines proportional allocation and stratified random sampling (SRS) to gather sample points and compute confusion matrices to validate eight LC products. The local accuracy of the eight LC maps differs significantly from the overall accuracy provided by the original authors in Southwest China. ESA WorldCover and CLCD demonstrate higher local accuracy than other products in Southwest China, with their overall accuracy (OA) values being 87.1% and 85.48%, respectively. Simultaneously, we computed the area for each LC map based on categories, quantifying uncertainty through the reporting of confidence intervals for both accuracy and area parameters. This study aims to validate and compare eight LC datasets and assess precision and area of diverse spatial resolution datasets for mapping and monitoring across Southwest China. Full article
(This article belongs to the Special Issue Recent Progress in Remote Sensing of Land Cover Change)
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23 pages, 19862 KiB  
Article
A Comprehensive Understanding of Post-Translational Modification of Sox2 via Acetylation and O-GlcNAcylation in Colorectal Cancer
by Yoojeong Seo, Dong Keon Kim, Jihye Park, Soo Jung Park, Jae Jun Park, Jae Hee Cheon and Tae Il Kim
Cancers 2024, 16(5), 1035; https://doi.org/10.3390/cancers16051035 - 3 Mar 2024
Cited by 2 | Viewed by 2652
Abstract
Aberrant expression of the pluripotency-associated transcription factor Sox2 is associated with poor prognosis in colorectal cancer (CRC). We investigated the regulatory roles of major post-translational modifications in Sox2 using two CRC cell lines, SW480 and SW620, derived from the same patient but with [...] Read more.
Aberrant expression of the pluripotency-associated transcription factor Sox2 is associated with poor prognosis in colorectal cancer (CRC). We investigated the regulatory roles of major post-translational modifications in Sox2 using two CRC cell lines, SW480 and SW620, derived from the same patient but with low and high Sox2 expression, respectively. Acetylation of K75 in the Sox2 nuclear export signal was relatively increased in SW480 cells and promotes Sox2 nucleocytoplasmic shuttling and proteasomal degradation of Sox2. LC-MS-based proteomics analysis identified HDAC4 and p300 as binding partners involved in the acetylation-mediated control of Sox2 expression in the nucleus. Sox2 K75 acetylation is mediated by the acetyltransferase activity of CBP/p300 and ACSS3. In SW620 cells, HDAC4 deacetylates K75 and is regulated by miR29a. O-GlcNAcylation on S246, in addition to K75 acetylation, also regulates Sox2 stability. These findings provide insights into the regulation of Sox2 through multiple post-translational modifications and pathways in CRC. Full article
(This article belongs to the Special Issue Targeted Therapy in Gastrointestinal Cancer)
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16 pages, 2967 KiB  
Article
Advancing Glucose Conjugated Gibberellins Discovery: A Structure–Oriented Screening and Identification Method for Unraveling Gibberellin Metabolites in Plants
by Chen Zeng, Wen-Jing Cai, Liu-Cheng Jiang, Tiantian Ye and Yu-Qi Feng
Metabolites 2024, 14(2), 96; https://doi.org/10.3390/metabo14020096 - 29 Jan 2024
Cited by 1 | Viewed by 1793
Abstract
Gibberellins (GAs) play a pivotal role in modulating plant growth and development. Glucose–conjugated gibberellins (Glc–GAs), a prevalent conjugated form of GAs, regulate intracellular GA levels by the coupling and decoupling of glucose groups. However, the diversity of Glc–GAs identified within individual species remains [...] Read more.
Gibberellins (GAs) play a pivotal role in modulating plant growth and development. Glucose–conjugated gibberellins (Glc–GAs), a prevalent conjugated form of GAs, regulate intracellular GA levels by the coupling and decoupling of glucose groups. However, the diversity of Glc–GAs identified within individual species remains limited, hinting at a multitude of yet undiscovered gibberellin metabolites. This lacuna poses considerable impediments to research efforts dedicated to comprehensively delineating the GA metabolic pathway. In this study, we developed a structure–oriented screening and identification method for Glc–GAs in plant species by employing LC–MS/MS coupled with chemical derivatization. Through the application of chemical derivatization technique, carboxyl groups on Glc–GAs were labeled which effectively enhanced the sensitivity and selectivity of mass spectrometry detection for these compounds. Concurrently, the integration of mass spectrometry fragmentation and chromatographic retention behavior facilitated the efficient screening and identification of potential Glc–GAs. With this strategy, we screened and identified 12 potential Glc–GAs from six plant species. These findings expand the Glc–GA diversity in plants and contribute to understanding GA metabolic pathways. Full article
(This article belongs to the Section Plant Metabolism)
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