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38 pages, 130318 KiB  
Project Report
Remote Sensing Applications for Pasture Assessment in Kazakhstan
by Gulnara Kabzhanova, Ranida Arystanova, Anuarbek Bissembayev, Asset Arystanov, Janay Sagin, Beybit Nasiyev and Aisulu Kurmasheva
Agronomy 2025, 15(3), 526; https://doi.org/10.3390/agronomy15030526 - 21 Feb 2025
Cited by 1 | Viewed by 2048
Abstract
Kazakhstan’s pasture, as a spatially extended agricultural resource for sustainable animal husbandry, requires effective monitoring with connected rational uses. Ranking number nine globally in terms of land size, Kazakhstan, with an area of about three million square km, requires proper assessment technologies for [...] Read more.
Kazakhstan’s pasture, as a spatially extended agricultural resource for sustainable animal husbandry, requires effective monitoring with connected rational uses. Ranking number nine globally in terms of land size, Kazakhstan, with an area of about three million square km, requires proper assessment technologies for climate change and anthropogenic impact to track the pasture lands’ degradation. Remote sensing (RS)-based adaptive approaches for assessing pasture load, combined with field cross-checking of pastures, have been applied to evaluate the quality of vegetation cover, economic potential, service function, regenerative capacity, pasture productivity, and changes in plant species composition for five pilot regions in Kazakhstan. The current stages of these efforts are presented in this project report. The pasture lands in five regions, including Pavlodar (8,340,064 ha), North Kazakhstan (2,871,248 ha), Akmola (5,783,503 ha), Kostanay (11,762,318 ha), Karaganda (19,709,128 ha), and Ulytau (18,260,865 ha), were evaluated. Combined RS data were processed and the Normalized Difference Vegetation Index (NDVI), Leaf Area Index (LAI), Fraction of Vegetation Cover (FCover), Fraction of Absorbed Photosynthetically Active Radiation (FAPAR), Canopy Chlorophyll Content (CCC), and Canopy Water Content (CWC) indices were determined, in relation to the herbage of pastures and their growth and development, for field biophysical analysis. The highest values of LAI, FCOVER, and FARAR were recorded in the Akmola region, with index values of 18.5, 126.42, and 53.9, and the North Kazakhstan region, with index values of 17.89, 143.45, and 57.91, respectively. The massive 2024 spring floods, which occurred in the Akmola, North Kazakhstan, Kostanay, and Karaganda regions, caused many problems, particularly to civil constructions and buildings; however, these same floods had a very positive impact on pasture areas as they increased soil moisture. Further detailed investigations are ongoing to update the flood zones, wetlands, and swamp areas. The mapping of proper flood zones is required in Kazakhstan for pasture activities, rather than civil building construction. The related sustainable permissible grazing husbandry pasture loads are required to develop also. Recommendations for these preparation efforts are in the works. Full article
(This article belongs to the Special Issue Remote Sensing Applications in Crop Monitoring and Modelling)
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27 pages, 6702 KiB  
Article
Assimilating Satellite-Based Biophysical Variables Data into AquaCrop Model for Silage Maize Yield Estimation Using Water Cycle Algorithm
by Elahe Akbari, Ali Darvishi Boloorani, Jochem Verrelst and Stefano Pignatti
Remote Sens. 2024, 16(24), 4665; https://doi.org/10.3390/rs16244665 - 13 Dec 2024
Viewed by 1476
Abstract
Accurate crop yield estimation is critical to successful agricultural operations. Current crop growth models often overlook the spatial and geographic components of the lands, leading to suboptimal yield estimates. To address this issue, assimilation of satellite vegetation products into these models can account [...] Read more.
Accurate crop yield estimation is critical to successful agricultural operations. Current crop growth models often overlook the spatial and geographic components of the lands, leading to suboptimal yield estimates. To address this issue, assimilation of satellite vegetation products into these models can account for spatial variations in the land and improve estimation accuracy. In this paper, the AquaCrop model, a water-driven crop growth model, was selected for recalibration and assimilation of satellite-derived biophysical products due to its simplicity and lack of computational complexity. To this end, field samples of soil (sampled before cultivation) and crop features were collected during the growing season of silage maize. Digital hemisphere photography (DHP) and destructive sampling methods were used for measuring fraction vegetation cover (fCover) and biomass in Qaleh-Now County, southern Tehran, in 2019. Based on our proposed workflow in previous studies, a Gaussian process regression–particle swarm optimization (GPR-PSO) algorithm and global sensitivity analysis were applied to retrieve the fCover and biomass from Sentinel-2 satellite data and to identify the most sensitive parameters in the AquaCrop model, respectively. Here, we propose the use of an optimization water cycle algorithm (WCA) instead of a PSO algorithm as an assimilation method for the parameter calibration of AquaCrop. This study also focused on using both fCover and biomass state variables simultaneously in the model, as opposed to only the fCover, and found that using both variables led to significantly higher calibration accuracy. The WCA method outperformed the PSO method in AquaCrop’s calibration, leading to more accurate results on maize yield estimates. It has enhanced results, decreasing RMSE values by 3.8 and 4.7 ton/ha, RRMSE by 6.4% and 10%, and increasing R2 by 0.17 and 0.35 for model calibration and validation, respectively. These results suggest that assimilating satellite-derived data and optimizing the calibration process through WCA can significantly improve the accuracy of crop yield estimations in water-driven crop growth models, highlighting the potential of this approach for precision agriculture. Full article
(This article belongs to the Special Issue Cropland and Yield Mapping with Multi-source Remote Sensing)
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25 pages, 8293 KiB  
Article
Estimating Grassland Biophysical Parameters in the Cantabrian Mountains Using Radiative Transfer Models in Combination with Multiple Endmember Spectral Mixture Analysis
by José Manuel Fernández-Guisuraga, Iván González-Pérez, Ana Reguero-Vaquero and Elena Marcos
Remote Sens. 2024, 16(23), 4547; https://doi.org/10.3390/rs16234547 - 4 Dec 2024
Cited by 2 | Viewed by 1023
Abstract
Grasslands are one of the most abundant and biodiverse ecosystems in the world. However, in southern European countries, the abandonment of traditional management activities, such as extensive grazing, has caused many semi-natural grasslands to be invaded by shrubs. Therefore, there is a need [...] Read more.
Grasslands are one of the most abundant and biodiverse ecosystems in the world. However, in southern European countries, the abandonment of traditional management activities, such as extensive grazing, has caused many semi-natural grasslands to be invaded by shrubs. Therefore, there is a need to characterize semi-natural grasslands to determine their aboveground primary production and livestock-carrying capacity. Nevertheless, current methods lack a realistic identification of vegetation assemblages where grassland biophysical parameters can be accurately retrieved by the inversion of turbid-medium radiative transfer models (RTMs) in fine-grained landscapes. To this end, in this study we proposed a novel framework in which multiple endmember spectral mixture analysis (MESMA) was implemented to realistically identify grassland-dominated pixels from Sentinel-2 imagery in heterogeneous mountain landscapes. Then, the inversion of PROSAIL RTM (coupled PROSPECT and SAIL leaf and canopy models) was implemented separately for retrieving grassland biophysical parameters, including the leaf area index (LAI), fractional vegetation cover (FCOVER), and aboveground biomass (AGB), from grassland-dominated Sentinel-2 pixels while accounting for non-vegetated areas at the subpixel level. The study region was the southern slope of the Cantabrian Mountains (Spain), with a high spatial variability of fine-grained land covers. The MESMA grassland fraction image had a high accuracy based on validation results using centimetric resolution aerial orthophotographs (R2 = 0.74, and RMSE = 0.18). The validation with field reference data from several mountain passes of the southern slope of the Cantabrian Mountains featured a high accuracy for LAI (R2 = 0.74, and RMSE = 0.56 m2·m−2), FCOVER (R2 = 0.78 and RMSE = 0.07), and AGB (R2 = 0.67, and RMSE = 43.44 g·m−2). This study provides a reliable method to accurately identify and estimate grassland biophysical variables in highly diverse landscapes at a regional scale, with important implications for the management and conservation of threatened semi-natural grasslands. Future studies should investigate the PROSAIL inversion over the endmember signatures and subpixel fractions depicted by MESMA to adequately address the parametrization of the underlying background reflectance by using prior information and should also explore the scalability of this approach to other heterogeneous landscapes. Full article
(This article belongs to the Section Environmental Remote Sensing)
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29 pages, 6780 KiB  
Article
Phenological and Biophysical Mediterranean Orchard Assessment Using Ground-Based Methods and Sentinel 2 Data
by Pierre Rouault, Dominique Courault, Guillaume Pouget, Fabrice Flamain, Papa-Khaly Diop, Véronique Desfonds, Claude Doussan, André Chanzy, Marta Debolini, Matthew McCabe and Raul Lopez-Lozano
Remote Sens. 2024, 16(18), 3393; https://doi.org/10.3390/rs16183393 - 12 Sep 2024
Cited by 4 | Viewed by 2210
Abstract
A range of remote sensing platforms provide high spatial and temporal resolution insights which are useful for monitoring vegetation growth. Very few studies have focused on fruit orchards, largely due to the inherent complexity of their structure. Fruit trees are mixed with inter-rows [...] Read more.
A range of remote sensing platforms provide high spatial and temporal resolution insights which are useful for monitoring vegetation growth. Very few studies have focused on fruit orchards, largely due to the inherent complexity of their structure. Fruit trees are mixed with inter-rows that can be grassed or non-grassed, and there are no standard protocols for ground measurements suitable for the range of crops. The assessment of biophysical variables (BVs) for fruit orchards from optical satellites remains a significant challenge. The objectives of this study are as follows: (1) to address the challenges of extracting and better interpreting biophysical variables from optical data by proposing new ground measurements protocols tailored to various orchards with differing inter-row management practices, (2) to quantify the impact of the inter-row at the Sentinel pixel scale, and (3) to evaluate the potential of Sentinel 2 data on BVs for orchard development monitoring and the detection of key phenological stages, such as the flowering and fruit set stages. Several orchards in two pedo-climatic zones in southeast France were monitored for three years: four apricot and nectarine orchards under different management systems and nine cherry orchards with differing tree densities and inter-row surfaces. We provide the first comparison of three established ground-based methods of assessing BVs in orchards: (1) hemispherical photographs, (2) a ceptometer, and (3) the Viticanopy smartphone app. The major phenological stages, from budburst to fruit growth, were also determined by in situ annotations on the same fields monitored using Viticanopy. In parallel, Sentinel 2 images from the two study sites were processed using a Biophysical Variable Neural Network (BVNET) model to extract the main BVs, including the leaf area index (LAI), fraction of absorbed photosynthetically active radiation (FAPAR), and fraction of green vegetation cover (FCOVER). The temporal dynamics of the normalised FAPAR were analysed, enabling the detection of the fruit set stage. A new aggregative model was applied to data from hemispherical photographs taken under trees and within inter-rows, enabling us to quantify the impact of the inter-row at the Sentinel 2 pixel scale. The resulting value compared to BVs computed from Sentinel 2 gave statistically significant correlations (0.57 for FCOVER and 0.45 for FAPAR, with respective RMSE values of 0.12 and 0.11). Viticanopy appears promising for assessing the PAI (plant area index) and FCOVER for orchards with grassed inter-rows, showing significant correlations with the Sentinel 2 LAI (R2 of 0.72, RMSE 0.41) and FCOVER (R2 0.66 and RMSE 0.08). Overall, our results suggest that Sentinel 2 imagery can support orchard monitoring via indicators of development and inter-row management, offering data that are useful to quantify production and enhance resource management. Full article
(This article belongs to the Section Remote Sensing in Agriculture and Vegetation)
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21 pages, 6691 KiB  
Article
Evaluation of the SAIL Radiative Transfer Model for Simulating Canopy Reflectance of Row Crop Canopies
by Dalei Han, Jing Liu, Runfei Zhang, Zhigang Liu, Tingrui Guo, Hao Jiang, Jin Wang, Huarong Zhao, Sanxue Ren and Peiqi Yang
Remote Sens. 2023, 15(23), 5433; https://doi.org/10.3390/rs15235433 - 21 Nov 2023
Cited by 4 | Viewed by 2553
Abstract
The widely used SAIL (Scattering by Arbitrarily Inclined Leaves) radiative transfer model (RTM) is designed for canopies that can be considered as homogeneous turbid media and thus should be inadequate for row canopies. However, numerous studies have employed the SAIL model for row [...] Read more.
The widely used SAIL (Scattering by Arbitrarily Inclined Leaves) radiative transfer model (RTM) is designed for canopies that can be considered as homogeneous turbid media and thus should be inadequate for row canopies. However, numerous studies have employed the SAIL model for row crops (e.g., wheat and maize) to simulate canopy reflectance or retrieve vegetation properties with satisfactory accuracy. One crucial reason may be that under certain conditions, a row crop canopy can be considered as a turbid medium, fulfilling the assumption of the SAIL model. Yet, a comprehensive analysis about the performance of SAIL in row canopies under various conditions is currently absent. In this study, we employed field datasets of wheat canopies and synthetic datasets of wheat and maize canopies to explore the impacts of the vegetation cover fraction (fCover), solar angle and soil background on the performance of SAIL in row crops. In the numerical experiments, the LESS 3D RTM was used as a reference to evaluate the performance of SAIL for various scenarios. The results show that the fCover is the most significant factor, and the row canopy with a high fCover has a low soil background influence. For a non-black soil background, both the field measurement and simulation datasets showed that the SAIL model accuracy initially decreased, and then increased with an increasing fCover, with the most significant errors occurring when the fCover was between about 0.4 and 0.7. As for the solar angles, the accuracy of synthetic wheat canopy will be higher with a larger SZA (solar zenith angle), but that of a synthetic maize canopy is little affected by the SZA. The accuracy of the SAA (solar azimuth angle) in an across-row direction is always higher than that in an along-row direction. Additionally, when the SZA ranges from 65° to 75° and the fCover of wheat canopies are greater than 0.6, SAIL can simulate the canopy reflectance with satisfactory accuracy (rRMSE < 10%); the same accuracy can be achieved in maize canopies as long as the fCover is greater than 0.8. These findings provide insight into the applicability of SAIL in row crops and support the use of SAIL in row canopies under certain conditions (with rRMSE < 10%). Full article
(This article belongs to the Special Issue Remote Sensing for Surface Biophysical Parameter Retrieval)
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17 pages, 6554 KiB  
Article
Biophysical Variable Retrieval of Silage Maize with Gaussian Process Regression and Hyperparameter Optimization Algorithms
by Elahe Akbari, Ali Darvishi Boloorani, Jochem Verrelst, Stefano Pignatti, Najmeh Neysani Samany, Saeid Soufizadeh and Saeid Hamzeh
Remote Sens. 2023, 15(14), 3690; https://doi.org/10.3390/rs15143690 - 24 Jul 2023
Cited by 10 | Viewed by 1986
Abstract
Quantification of vegetation biophysical variables such as leaf area index (LAI), fractional vegetation cover (fCover), and biomass are among the key factors across hydrological, agricultural, and irrigation management studies. The present study proposes a kernel-based machine learning algorithm capable of performing adaptive and [...] Read more.
Quantification of vegetation biophysical variables such as leaf area index (LAI), fractional vegetation cover (fCover), and biomass are among the key factors across hydrological, agricultural, and irrigation management studies. The present study proposes a kernel-based machine learning algorithm capable of performing adaptive and nonlinear data fitting so as to generate a suitable, accurate, and robust algorithm for spatio-temporal estimation of the three mentioned variables using Sentinel-2 images. To this aim, Gaussian process regression (GPR)–particle swarm optimization (PSO), GPR–genetic algorithm (GA), GPR–tabu search (TS), and GPR–simulated annealing (SA) hyperparameter-optimized algorithms were developed and compared against kernel-based machine learning regression algorithms and artificial neural network (ANN) and random forest (RF) algorithms. The accuracy of the proposed algorithms was assessed using digital hemispherical photography (DHP) data and destructive measurements performed during the growing season of silage maize in agricultural fields of Ghale-Nou, southern Tehran, Iran, in the summer of 2019. The results on biophysical variables against validation data showed that the developed GPR-PSO algorithm outperformed other algorithms under study in terms of robustness and accuracy (0.917, 0.931, 0.882 using R2 and 0.627, 0.078, and 1.99 using RMSE in LAI, fCover, and biomass of Sentinel-2 20 m, respectively). GPR-PSO also possesses the unique ability to generate pixel-based uncertainty maps (confidence level) for prediction purposes (i.e., estimated uncertainty level <0.7 in LAI, fCover, and biomass, for 96%, 98%, and 71% of the total study area, respectively). Altogether, GPR-PSO appears to be the most suitable option for mapping biophysical variables at the local scale using Sentinel-2 images. Full article
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23 pages, 9545 KiB  
Article
Remotely Sensed Phenotypic Traits for Heritability Estimates and Grain Yield Prediction of Barley Using Multispectral Imaging from UAVs
by Dessislava Ganeva, Eugenia Roumenina, Petar Dimitrov, Alexander Gikov, Georgi Jelev, Boryana Dyulgenova, Darina Valcheva and Violeta Bozhanova
Sensors 2023, 23(11), 5008; https://doi.org/10.3390/s23115008 - 23 May 2023
Cited by 5 | Viewed by 2988
Abstract
This study tested the potential of parametric and nonparametric regression modeling utilizing multispectral data from two different unoccupied aerial vehicles (UAVs) as a tool for the prediction of and indirect selection of grain yield (GY) in barley breeding experiments. The coefficient of determination [...] Read more.
This study tested the potential of parametric and nonparametric regression modeling utilizing multispectral data from two different unoccupied aerial vehicles (UAVs) as a tool for the prediction of and indirect selection of grain yield (GY) in barley breeding experiments. The coefficient of determination (R2) of the nonparametric models for GY prediction ranged between 0.33 and 0.61 depending on the UAV and flight date, where the highest value was achieved with the DJI Phantom 4 Multispectral (P4M) image from 26 May (milk ripening). The parametric models performed worse than the nonparametric ones for GY prediction. Independent of the retrieval method and UAV, GY retrieval was more accurate in milk ripening than dough ripening. The leaf area index (LAI), fraction of absorbed photosynthetically active radiation (fAPAR), fraction vegetation cover (fCover), and leaf chlorophyll content (LCC) were modeled at milk ripening using nonparametric models with the P4M images. A significant effect of the genotype was found for the estimated biophysical variables, which was referred to as remotely sensed phenotypic traits (RSPTs). Measured GY heritability was lower, with a few exceptions, compared to the RSPTs, indicating that GY was more environmentally influenced than the RSPTs. The moderate to strong genetic correlation of the RSPTs to GY in the present study indicated their potential utility as an indirect selection approach to identify high-yield genotypes of winter barley. Full article
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19 pages, 7953 KiB  
Article
Crop Phenology Modelling Using Proximal and Satellite Sensor Data
by Anne Gobin, Abdoul-Hamid Mohamed Sallah, Yannick Curnel, Cindy Delvoye, Marie Weiss, Joost Wellens, Isabelle Piccard, Viviane Planchon, Bernard Tychon, Jean-Pierre Goffart and Pierre Defourny
Remote Sens. 2023, 15(8), 2090; https://doi.org/10.3390/rs15082090 - 15 Apr 2023
Cited by 17 | Viewed by 4672
Abstract
Understanding crop phenology is crucial for predicting crop yields and identifying potential risks to food security. The objective was to investigate the effectiveness of satellite sensor data, compared to field observations and proximal sensing, in detecting crop phenological stages. Time series data from [...] Read more.
Understanding crop phenology is crucial for predicting crop yields and identifying potential risks to food security. The objective was to investigate the effectiveness of satellite sensor data, compared to field observations and proximal sensing, in detecting crop phenological stages. Time series data from 122 winter wheat, 99 silage maize, and 77 late potato fields were analyzed during 2015–2017. The spectral signals derived from Digital Hemispherical Photographs (DHP), Disaster Monitoring Constellation (DMC), and Sentinel-2 (S2) were crop-specific and sensor-independent. Models fitted to sensor-derived fAPAR (fraction of absorbed photosynthetically active radiation) demonstrated a higher goodness of fit as compared to fCover (fraction of vegetation cover), with the best model fits obtained for maize, followed by wheat and potato. S2-derived fAPAR showed decreasing variability as the growing season progressed. The use of a double sigmoid model fit allowed defining inflection points corresponding to stem elongation (upward sigmoid) and senescence (downward sigmoid), while the upward endpoint corresponded to canopy closure and the maximum values to flowering and fruit development. Furthermore, increasing the frequency of sensor revisits is beneficial for detecting short-duration crop phenological stages. The results have implications for data assimilation to improve crop yield forecasting and agri-environmental modeling. Full article
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21 pages, 5144 KiB  
Article
Predicting Leaf Phenology in Forest Tree Species Using UAVs and Satellite Images: A Case Study for European Beech (Fagus sylvatica L.)
by Mihnea Ioan Cezar Ciocîrlan, Alexandru Lucian Curtu and Gheorghe Raul Radu
Remote Sens. 2022, 14(24), 6198; https://doi.org/10.3390/rs14246198 - 7 Dec 2022
Cited by 7 | Viewed by 2767
Abstract
Understanding forest tree phenology is essential for assessing forest ecosystem responses to environmental changes. Observations of phenology using remote sensing devices, such as satellite imagery and Unmanned Aerial Vehicles (UAVs), along with machine learning, are promising techniques. They offer fast, accurate, and unbiased [...] Read more.
Understanding forest tree phenology is essential for assessing forest ecosystem responses to environmental changes. Observations of phenology using remote sensing devices, such as satellite imagery and Unmanned Aerial Vehicles (UAVs), along with machine learning, are promising techniques. They offer fast, accurate, and unbiased results linked to ground data to enable us to understand ecosystem processes. Here, we focused on European beech, one of Europe’s most common forest tree species, along an altitudinal transect in the Carpathian Mountains. We performed ground observations of leaf phenology and collected aerial images using UAVs and satellite-based biophysical vegetation parameters. We studied the time series correlations between ground data and remote sensing observations (GLI r = 0.86 and FCover r = 0.91) and identified the most suitable vegetation indices (VIs). We trained linear and non-linear (random forest) models to predict the leaf phenology as a percentage of leaf cover on test datasets; the models had reasonable accuracy, RMSE percentages of 8% for individual trees, using UAV, and 12% as an average site value, using the Copernicus biophysical parameters. Our results suggest that the UAVs and satellite images can provide reliable data regarding leaf phenology in the European beech. Full article
(This article belongs to the Section Forest Remote Sensing)
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21 pages, 5942 KiB  
Article
A Comprehensive Comparison of Machine Learning and Feature Selection Methods for Maize Biomass Estimation Using Sentinel-1 SAR, Sentinel-2 Vegetation Indices, and Biophysical Variables
by Chi Xu, Yanling Ding, Xingming Zheng, Yeqiao Wang, Rui Zhang, Hongyan Zhang, Zewen Dai and Qiaoyun Xie
Remote Sens. 2022, 14(16), 4083; https://doi.org/10.3390/rs14164083 - 20 Aug 2022
Cited by 24 | Viewed by 4843
Abstract
Rapid and accurate estimation of maize biomass is critical for predicting crop productivity. The launched Sentinel-1 (S-1) synthetic aperture radar (SAR) and Sentinel-2 (S-2) missions offer a new opportunity to map biomass. The selection of appropriate response variables is crucial for improving the [...] Read more.
Rapid and accurate estimation of maize biomass is critical for predicting crop productivity. The launched Sentinel-1 (S-1) synthetic aperture radar (SAR) and Sentinel-2 (S-2) missions offer a new opportunity to map biomass. The selection of appropriate response variables is crucial for improving the accuracy of biomass estimation. We developed models from SAR polarization indices, vegetation indices (VIs), and biophysical variables (BPVs) based on gaussian process regression (GPR) and random forest (RF) with feature optimization to retrieve maize biomass in Changchun, Jilin province, Northeastern China. Three new predictors from each type of remote sensing data were proposed based on the correlations to biomass measured in June, July, and August 2018. The results showed that a predictor combined by vertical-horizontal polarization (VV), vertical-horizontal polarization (VH), and the difference of VH and VV (VH-VV) derived from S-1 images of June, July, and August, respectively, with GPR and RF, provided a more accurate estimation of biomass (R2 = 0.81–0.83, RMSE = 0.40–0.41 kg/m2) than the models based on single SAR polarization indices or their combinations, or optimized features (R2 = 0.04–0.39, RMSE = 0.84–1.08 kg/m2). Among the S-2 VIs, the GPR model using a combination of ratio vegetation index (RVI) of June, normalized different infrared index (NDII) of July, and normalized difference vegetation index (NDVI) of August achieved a result with R2 = 0.83 and RMSE = 0.39 kg/m2, much better than single VIs or their combination, or optimized features (R2 of 0.31–0.77, RMSE of 0.47–0.87 kg/m2). A BPV predictor, combined with leaf chlorophyll content (CAB) in June, canopy water content (CWC) in July, and fractional vegetation cover (FCOVER) in August, with RF, also yielded the highest accuracy (R2 = 0.85, RMSE = 0.38 kg/m2) compared to that of single BPVs or their combinations, or optimized subset. Overall, the three combined predictors were found to be significant contributors to improving the estimation accuracy of biomass with GPR and RF methods. This study clearly sheds new insights on the application of S-1 and S-2 data on maize biomass modeling. Full article
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17 pages, 2375 KiB  
Article
Analysis of Biophysical Variables in an Onion Crop (Allium cepa L.) with Nitrogen Fertilization by Sentinel-2 Observations
by Alejandra Casella, Luciano Orden, Néstor A. Pezzola, Carolina Bellaccomo, Cristina I. Winschel, Gabriel R. Caballero, Jesús Delegido, Luis Manuel Navas Gracia and Jochem Verrelst
Agronomy 2022, 12(8), 1884; https://doi.org/10.3390/agronomy12081884 - 11 Aug 2022
Cited by 11 | Viewed by 3830
Abstract
The production of onions bulbs (Allium cepa L.) requires a high amount of nitrogen. According to the demand of sustainable agriculture, the information-development and communication technologies allow for improving the efficiency of nitrogen fertilization. In the south of the province of Buenos [...] Read more.
The production of onions bulbs (Allium cepa L.) requires a high amount of nitrogen. According to the demand of sustainable agriculture, the information-development and communication technologies allow for improving the efficiency of nitrogen fertilization. In the south of the province of Buenos Aires, Argentina, between 8000 and 10,000 hectares per year−1 are cultivated in the districts of Villarino and Patagones. This work aimed to analyze the relationship of biophysical variables: leaf area index (LAI), canopy chlorophyll content (CCC), and canopy cover factor (fCOVER), with the nitrogen fertilization of an intermediate cycle onion crop and its effects on yield. A field trial study with different doses of granulated urea and granulated urea was carried out, where biophysical characteristics were evaluated in the field and in Sentinel-2 satellite observations. Field data correlated well with satellite data, with an R2 of 0.91, 0.96, and 0.85 for LAI, fCOVER, and CCC, respectively. The application of nitrogen in all its doses produced significantly higher yields than the control. The LAI and CCC variables had a positive correlation with yield in the months of November and December. A significant difference was observed between U250 (62 Mg ha−1) and the other treatments. The U500 dose led to a yield increase of 27% compared to U250, while the difference between U750 and U500 was 6%. Full article
(This article belongs to the Special Issue Selected Papers from 11th Iberian Agroengineering Congress)
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39 pages, 1897 KiB  
Review
A Review of Hybrid Approaches for Quantitative Assessment of Crop Traits Using Optical Remote Sensing: Research Trends and Future Directions
by Asmaa Abdelbaki and Thomas Udelhoven
Remote Sens. 2022, 14(15), 3515; https://doi.org/10.3390/rs14153515 - 22 Jul 2022
Cited by 22 | Viewed by 4443
Abstract
Remote sensing technology allows to provide information about biochemical and biophysical crop traits and monitor their spatiotemporal dynamics of agriculture ecosystems. Among multiple retrieval techniques, hybrid approaches have been found to provide outstanding accuracy, for instance, for the inference of leaf area index [...] Read more.
Remote sensing technology allows to provide information about biochemical and biophysical crop traits and monitor their spatiotemporal dynamics of agriculture ecosystems. Among multiple retrieval techniques, hybrid approaches have been found to provide outstanding accuracy, for instance, for the inference of leaf area index (LAI), fractional vegetation cover (fCover), and leaf and canopy chlorophyll content (LCC and CCC). The combination of radiative transfer models (RTMs) and data-driven models creates an advantage in the use of hybrid methods. Through this review paper, we aim to provide state-of-the-art hybrid retrieval schemes and theoretical frameworks. To achieve this, we reviewed and systematically analyzed publications over the past 22 years. We identified two hybrid-based parametric and hybrid-based nonparametric regression models and evaluated their performance for each variable of interest. From the results of our extensive literature survey, most research directions are now moving towards combining RTM and machine learning (ML) methods in a symbiotic manner. In particular, the development of ML will open up new ways to integrate innovative approaches such as integrating shallow or deep neural networks with RTM using remote sensing data to reduce errors in crop trait estimations and improve control of crop growth conditions in very large areas serving precision agriculture applications. Full article
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27 pages, 8304 KiB  
Article
Monitoring Maize Growth and Calculating Plant Heights with Synthetic Aperture Radar (SAR) and Optical Satellite Images
by İbrahim Arslan, Mehmet Topakcı and Nusret Demir
Agriculture 2022, 12(6), 800; https://doi.org/10.3390/agriculture12060800 - 1 Jun 2022
Cited by 13 | Viewed by 9828
Abstract
The decrease in water resources due to climate change is expected to have a significant impact on agriculture. On the other hand, as the world population increases so does the demand for food. It is necessary to better manage environmental resources and maintain [...] Read more.
The decrease in water resources due to climate change is expected to have a significant impact on agriculture. On the other hand, as the world population increases so does the demand for food. It is necessary to better manage environmental resources and maintain an adequate level of crop production in a world where the population is constantly increasing. Therefore, agricultural activities must be closely monitored, especially in maize fields since maize is of great importance to both humans and animals. Sentinel-1 Synthetic Aperture Radar (SAR) and Sentinel-2 optical satellite images were used to monitor maize growth in this study. Backscatter and interferometric coherence values derived from Sentinel-1 images, as well as Normalized Difference Vegetation Index (NDVI) and values related to biophysical variables (such as Leaf Area Index (LAI), Fraction of Vegetation Cover (fCover or FVC), and Canopy Water Content (CW)) derived from Sentinel-2 images were investigated. Sentinel-1 images were also used to calculate plant heights. The Interferometric SAR (InSAR) technique was applied to calculate interferometric coherence values and plant heights. For the plant height calculation, two image pairs with the largest possible perpendicular baseline were selected. Backscatter, NDVI, LAI, fCover, and CW values were low before planting, while the interferometric coherence values were generally high. Backscatter, NDVI, LAI, fCover, and CW values increased as the maize grew, while the interferometric coherence values decreased. Among all Sentinel-derived values, fCover had the best correlation with maize height until maize height exceeded 260 cm (R2 = 0.97). After harvest, a decrease in backscatter, NDVI, LAI, fCover, and CW values and an increase in interferometric coherence values were observed. NDVI, LAI, fCover, and CW values remained insensitive to tillage practices, whereas backscatter and interferometric coherence values were found to be sensitive to planting operations. In addition, backscatter values were also sensitive to irrigation operations, even when the average maize height was about 235 cm. Cloud cover and/or fog near the study area were found to affect NDVI, LAI, fCover, and CW values, while precipitation events had a significant impact on backscatter and interferometric coherence values. Furthermore, using Sentinel-1 images, the average plant height was calculated with an error of about 50 cm. Full article
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30 pages, 7656 KiB  
Article
Phenotypic Traits Estimation and Preliminary Yield Assessment in Different Phenophases of Wheat Breeding Experiment Based on UAV Multispectral Images
by Dessislava Ganeva, Eugenia Roumenina, Petar Dimitrov, Alexander Gikov, Georgi Jelev, Rangel Dragov, Violeta Bozhanova and Krasimira Taneva
Remote Sens. 2022, 14(4), 1019; https://doi.org/10.3390/rs14041019 - 20 Feb 2022
Cited by 33 | Viewed by 4680
Abstract
The utility of unmanned aerial vehicles (UAV) imagery in retrieving phenotypic data to support plant breeding research has been a topic of increasing interest in recent years. The advantages of image-based phenotyping are related to the high spatial and temporal resolution of the [...] Read more.
The utility of unmanned aerial vehicles (UAV) imagery in retrieving phenotypic data to support plant breeding research has been a topic of increasing interest in recent years. The advantages of image-based phenotyping are related to the high spatial and temporal resolution of the retrieved data and the non-destructive and rapid method of data acquisition. This study trains parametric and nonparametric regression models to retrieve leaf area index (LAI), fraction of absorbed photosynthetically active radiation (fAPAR), fractional vegetation cover (fCover), leaf chlorophyll content (LCC), canopy chlorophyll content (CCC), and grain yield (GY) of winter durum wheat breeding experiment from four-bands UAV images. A ground dataset, collected during two field campaigns and complemented with data from a previous study, is used for model development. The dataset is split at random into two parts, one for training and one for testing the models. The tested parametric models use the vegetation index formula and parametric functions. The tested nonparametric models are partial least square regression (PLSR), random forest regression (RFR), support vector regression (SVR), kernel ridge regression (KRR), and Gaussian processes regression (GPR). The retrieved biophysical variables along with traditional phenotypic traits (plant height, yield, and tillering) are analysed for detection of genetic diversity, proximity, and similarity in the studied genotypes. Analysis of variance (ANOVA), Duncan’s multiple range test, correlation analysis, and principal component analysis (PCA) are performed with the phenotypic traits. The parametric and nonparametric models show close results for GY retrieval, with parametric models indicating slightly higher accuracy (R2 = 0.49; RMSE = 0.58 kg/plot; rRMSE = 6.1%). However, the nonparametric model, GPR, computes per pixel uncertainty estimation, making it more appealing for operational use. Furthermore, our results demonstrate that grain filling was better than flowering phenological stage to predict GY. The nonparametric models show better results for biophysical variables retrieval, with GPR presenting the highest prediction performance. Nonetheless, robust models are found only for LAI (R2 = 0.48; RMSE = 0.64; rRMSE = 13.5%) and LCC (R2 = 0.49; RMSE = 31.57 mg m−2; rRMSE = 6.4%) and therefore these are the only remotely sensed phenotypic traits included in the statistical analysis for preliminary assessment of wheat productivity. The results from ANOVA and PCA illustrate that the retrieved remotely sensed phenotypic traits are a valuable addition to the traditional phenotypic traits for plant breeding studies. We believe that these preliminary results could speed up crop improvement programs; however, stronger interdisciplinary research is still needed, as well as uncertainty estimation of the remotely sensed phenotypic traits. Full article
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26 pages, 8126 KiB  
Article
Fractional Vegetation Cover Derived from UAV and Sentinel-2 Imagery as a Proxy for In Situ FAPAR in a Dense Mixed-Coniferous Forest?
by Birgitta Putzenlechner, Philip Marzahn, Philipp Koal and Arturo Sánchez-Azofeifa
Remote Sens. 2022, 14(2), 380; https://doi.org/10.3390/rs14020380 - 14 Jan 2022
Cited by 4 | Viewed by 4463
Abstract
The fraction of absorbed photosynthetic active radiation (FAPAR) is an essential climate variable for assessing the productivity of ecosystems. Satellite remote sensing provides spatially distributed FAPAR products, but their accurate and efficient validation is challenging in forest environments. As the FAPAR is linked [...] Read more.
The fraction of absorbed photosynthetic active radiation (FAPAR) is an essential climate variable for assessing the productivity of ecosystems. Satellite remote sensing provides spatially distributed FAPAR products, but their accurate and efficient validation is challenging in forest environments. As the FAPAR is linked to the canopy structure, it may be approximated by the fractional vegetation cover (FCOVER) under the assumption that incoming radiation is either absorbed or passed through gaps in the canopy. With FCOVER being easier to retrieve, FAPAR validation activities could benefit from a priori information on FCOVER. Spatially distributed FCOVER is available from satellite remote sensing or can be retrieved from imagery of Unmanned Aerial Vehicles (UAVs) at a centimetric resolution. We investigated remote sensing-derived FCOVER as a proxy for in situ FAPAR in a dense mixed-coniferous forest, considering both absolute values and spatiotemporal variability. Therefore, direct FAPAR measurements, acquired with a Wireless Sensor Network, were related to FCOVER derived from UAV and Sentinel-2 (S2) imagery at different seasons. The results indicated that spatially aggregated UAV-derived FCOVER was close (RMSE = 0.02) to in situ FAPAR during the peak vegetation period when the canopy was almost closed. The S2 FCOVER product underestimated both the in situ FAPAR and UAV-derived FCOVER (RMSE > 0.3), which we attributed to the generic nature of the retrieval algorithm and the coarser resolution of the product. We concluded that UAV-derived FCOVER may be used as a proxy for direct FAPAR measurements in dense canopies. As another key finding, the spatial variability of the FCOVER consistently surpassed that of the in situ FAPAR, which was also well-reflected in the S2 FAPAR and FCOVER products. We recommend integrating this experimental finding as consistency criteria in the context of ECV quality assessments. To facilitate the FAPAR sampling activities, we further suggest assessing the spatial variability of UAV-derived FCOVER to benchmark sampling sizes for in situ FAPAR measurements. Finally, our study contributes to refining the FAPAR sampling protocols needed for the validation and improvement of FAPAR estimates in forest environments. Full article
(This article belongs to the Special Issue European Remote Sensing-New Solutions for Science and Practice)
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