Search Results (668)

We designed a label-free fluorescent aptasensor assisted by exonuclease III (Exo III) for sensitive insulin (Ins) detection. The method has high sensitivity, anti-interference properties and repeatability. Additionally, the label-free fluorescent aptasensor assisted by Exo III used to detect Ins has not been reported on yet. In this study, we connected a modified DNA sequence to the 5′ end of an aptamer, modifying it into a hairpin structure and exposing 11 nucleotides at the 3′ end containing the base adenine (A). The A was substituted with base 2-aminopurine (2AP) to provide a label-free stable hairpin fluorescent probe (2AP-hairpin probe). This strategy took advantage of the high binding affinity of the Ins aptamer and the susceptibility of 2AP to the local base stacking environment. When Ins is added to the detection system, the 2AP-hairpin probe binds to Ins, adopts a folded state, and blocks Exo III’s access to the binding site for cutting DNA. 2AP cannot be released, and the fluorescence of the 2AP-hairpin probe/cDNA/Ins/Exo III system cannot be restored. Ins detection is achieved by comparing changes in the fluorescent intensity before and after adding Ins to the detection system. The detection limit of the aptasensor is as low as 1.62 nM with a linear range of 3–130 nM. Furthermore, it is able to selectively and directly detect Ins in biological fluids, demonstrating significant clinical application value and research significance. Full article

Schistosomiasis, caused by Schistosoma species, is notoriously difficult to accurately diagnose with conventional methods. In this study, we present an innovative biosensor that integrates CRISPR–Cas12a technology with nucleic acid aptamers for the highly sensitive detection of Schistosoma japonicum eggs. The biosensor leverages a Y-shaped DNA structure (Y-DNA) that incorporates an aptamer specific to S. japonicum eggs, along with an activator DNA and a segment for immobilization on magnetic nanomaterials. Upon target recognition, the Y-DNA releases the activator, which triggers the collateral cleavage activity of Cas12a, enabling the direct detection of eggs. This system demonstrates remarkable sensitivity, being capable of detecting individual eggs in infected rabbit serum and feces. Moreover, it effectively distinguishes the eggs of S. japonicum from those of other parasitic species. The simplicity, high sensitivity, and rapid detection of our biosensor offer significant potential for improving the diagnosis of schistosomiasis, providing a novel, reliable tool for early detection in clinical settings. Full article

Gold nanospheres (AuNPs) and gold nanoflowers (AuNFs) are widely used as platforms for DNA aptamer functionalization, while conjugation behavior and colloidal tolerance remain important factors affecting subsequent sensing-oriented optimization. In this study, 82-nt thiolated DNA aptamer constructs bearing either 3′-SH or 5′-SH terminal modification were immobilized onto citrate-stabilized AuNPs and AuNFs under matched stepwise salt-aging conditions. Apparent nanoparticle-associated DNA output was estimated by Qubit-based measurement of unbound ssDNA in the supernatant and expressed as mass-based loading output (ng). Under the tested stock-dispersion conditions, AuNP samples showed higher apparent conjugation output than AuNF samples. Specifically, the apparent conjugation yields for AuNPs were 80.65 ± 1.64% (3′-SH) and 84.76 ± 1.98% (5′-SH), whereas those for AuNFs were 66.64 ± 3.36% (3′-SH) and 73.65 ± 1.36% (5′-SH). The corresponding apparent DNA loading outputs were 2329.7 ± 47.4 ng and 2448.7 ± 57.1 ng for AuNPs, and 1925.1 ± 97.0 ng and 2127.4 ± 39.3 ng for AuNFs. DLS size increases and zeta potential shifts toward more negative values were consistent with the formation of a DNA-associated interfacial layer, while TEM images supported morphology retention after conjugation. A qualitative visual salt-challenge assessment indicated that aptamer-functionalized nanoparticles displayed improved resistance to salt-induced aggregation relative to bare particles under the tested conditions. Because the commercially supplied AuNP and AuNF dispersions were not normalized to identical particle number or accessible surface area, the reported values should be interpreted as comparative apparent outputs rather than intrinsic loading capacities. Within this scope, the present study provides a convenient preliminary materials-level evaluation of thiolated aptamer conjugation behavior and may support future glyphosate aptasensor optimization. Full article

Glyphosate is a highly polar herbicide, the reliable molecular recognition of which is complicated by co-occurring structural analogues, metabolites, and derivatives in real-world samples. Rather than reporting new aptamer discovery, this study establishes a standardized, solution-phase isothermal titration calorimetry (ITC) workflow to thermodynamically reassess two literature-reported glyphosate DNA aptamers, Seq03 and Seq05, under matched buffer composition and instrument settings. After verification of baseline stability and evaluation of heat-of-dilution contributions, ligand-to-aptamer titrations yielded apparent dissociation constants of approximately 8.14 μM for Seq03 and 40.2 μM for Seq05, enabling affinity-based prioritization of these reported candidates within the tested concentration window. To define an application-relevant selectivity boundary, we further constructed a counter-screen panel restricted to glyphosate-related chemicals, including structural analogues, metabolites, and derivatives, and evaluated all candidates using an identical ITC protocol with explicit background handling. None of the counter-screen compounds produced binding-consistent, saturable isotherms after integration and control-based interpretation; instead, their responses remained close to background heat and were therefore operationally classified as having no detectable binding under the tested conditions, including a reverse-titration format check with Glufosinate-N-acetyl. Collectively, these results position ITC as a label-free, platform-independent validation step for small-molecule aptamer benchmarking prior to analytical translation, while also highlighting that the present conclusions are bounded by the tested PBS-based conditions and the sensitivity window of the current ITC configuration. Full article

Bongkrekic acid is a lethal mitochondrial toxin produced by Burkholderia gladioli pathovar cocovenenans, posing severe threats to food safety due to their high stability and the lack of effective antidotes. Developing specific, high-affinity recognition elements is crucial to overcoming the limitations of current BA detection methods in food matrices, and thereby safeguarding food safety and public health. In this study, we report for the first time the selection and remodelling of a DNA aptamer with high affinity for BA, which could be used as a promising recognition tool for sensitive BA detection in food. Integrating isothermal titration calorimetry, molecular docking, and molecular dynamics simulations revealed that the binding of BA to F3-1 follows an induced-fit mechanism. This study is the first to report a DNA aptamer with nanomolar affinity for BA, clarify its underlying binding mechanism, and provide a reliable recognition element for sensitive and specific BA detection in food samples. Full article

Thyroxine (T4) is a key hormone regulating metabolic, cardiovascular, and neurodevelopmental processes, yet its clinical quantification still relies on centralized immunoassays that limit rapid or point-of-care monitoring. Here, we present a label-free biosensing platform based on silicon nanowire field-effect transistors (SiNW-FETs) functionalized with a T4-selective DNA aptamer via a 3-Triethoxysilyl propylsuccinic Anhydride (TESPSA)-mediated silanization approach, enabling a streamlined two-step modification for oriented immobilization. The biosensor achieves robust real-time detection of T4 across the physiological concentration range (5–30 pM), with a limit of detection of ~5 pM and a strong linear correlation between drain current and analyte concentration (R² = 0.9931). Specificity is confirmed using non-functionalized devices and estradiol as a non-target control. All measurements were performed in undiluted phosphate-buffered saline, representing a physiologically relevant ionic environment and demonstrating stable sensor performance under realistic buffer conditions. The dose–response behavior follows a Hill model, allowing extraction of binding parameters and confirming that the electrical signal originates from specific aptamer–target interactions. These results demonstrate that aptamer-functionalized SiNW-FETs provide a highly sensitive, selective, and miniaturizable platform for quantitative thyroid hormone monitoring, with strong potential for future point-of-care applications. Full article

G-quadruplexes are guanine-rich DNA or RNA structures comprising two or more stacked guanine tetrads (G-quartet) with nucleobases in the loops linking the G-quartets. The thermal stability of the thrombin-binding aptamer G2 d(G₂T₂G₂TGTG₂T₂G₂) G-quadruplex was quantified using m-values in aqueous glycine betaine (GB), proline, TMAO, and urea solutions using UV-absorbance spectroscopy. The thermal stability of the G2 variants was also explored with nucleobase substitutions in the TGT loop (TAT, TCT, TTT, UGU, and UUU), in the T₂ loops (T₄, U₂), or in both loops (UGU and U₂, UUU and U₂). GB and TMAO strongly stabilized G2 and its variants. Urea weakly destabilized G2 and its variants, while proline acted as a weak stabilizer or destabilizer depending on G2 variant nucleobase sequence. Both the unfolding enthalpy and entropy were positively correlated with cosolute molality for all cosolute and G-quadruplex combinations. Analysis of the change in solvent-accessible surface area (ΔASA) after unfolding G2 suggested the stability of G2 and its variants in aqueous cosolute solutions was driven by favorable interaction of cosolutes with G-quartet ΔASA and net-favorable or unfavorable interactions with the loop ΔASA. Our results reinforce a general mechanism of folded DNA and RNA stability modulation in cosolute solutions. Full article

The development of highly sensitive and reliable strategies for microcystin-LR (MC-LR) monitoring remains critical for environmental safety and public health protection. Herein, we report a metallene-enabled electrochemiluminescence (ECL) biosensing platform based on ultrathin PdMoCu trimetallic metallenes for femtogram-level MC-LR detection. The two-dimensional PdMoCu metallenes provide abundant active sites and accelerated interfacial charge-transfer kinetics through synergistic electronic modulation among Pd, Mo, and Cu atoms, significantly enhancing the Ru(bpy)₃²⁺/TPrA ECL efficiency. By integrating a programmable H1–aptamer duplex interface, electrostatic enrichment of Ru(bpy)₃²⁺ was achieved, enabling target-responsive luminophore release via aptamer-triggered structural switching. This cooperative amplification mechanism, combining catalytic acceleration and DNA-mediated signal modulation, results in a sensitive signal-off detection mode. Under optimized conditions, the biosensor exhibited a wide linear response from 0.1 pg mL⁻¹ to 50 ng mL⁻¹ with a detection limit as low as 37 fg mL⁻¹. The platform demonstrated excellent selectivity against structural analogues, high reproducibility, and satisfactory recovery (99.3–102.0%) in real tap water samples. This work not only highlights the catalytic potential of trimetallic metallenes in ECL systems but also establishes a generalizable interfacial engineering strategy for ultrasensitive detection of trace environmental contaminants. Full article

The plague, caused by Yersinia pestis, has resulted in significant mortality over the past century. Despite advances in antimicrobial therapy, plague remains a re-emerging infectious disease with ongoing outbreaks and increasing concerns regarding antimicrobial resistance. Today, plague cases are still being reported, and the loss of effectiveness of treatment methods remains a major challenge. Therefore, effective treatment strategies are needed. In this study, we aimed to develop aptamers specific to Yersinia outer protein M (YopM), a key immunosuppressive protein that is essential for virulence. Our goal was to develop an aptamer that binds to YopM and inhibits its interaction with the human DEAD-box helicase 3 (DDX3) protein. YopM-DDX3 protein interaction was targeted because of its key role in nucleocytoplasmic shuttling of YopM. To achieve this, we developed the YopM16 aptamer using magnetic bead-based (Systematic Evolution of Ligands by Exponential Enrichment) (SELEX). The selected YopM16 aptamer exhibited a half-maximal inhibitory concentration(IC₅₀) value of 103.3 ± 2 nM and effectively inhibited the interaction between YopM and DDX3. The inhibitory effect of the aptamer on protein interaction was confirmed using a pull-down assay and colorimetric test. Given that protein–protein interaction surfaces are considered undruggable, YopM16 is a promising inhibitor with the potential to serve as a molecular tool to investigate the virulence mechanism of YopM, as well as a novel antibacterial agent upon validation of its inhibition in cellular models. Full article

Cancer therapy is increasingly shaped by the need for agents that are both mechanistically precise and clinically tolerable. Sulforaphane (SFN), a dietary isothiocyanate enriched in cabbage-family vegetables such as cauliflower and Brussels sprouts, has emerged as a pleiotropic modulator of tumor biology. This review synthesizes current evidence that SFN regulates diverse cancer-relevant processes, including redox homeostasis, cell-cycle progression, apoptosis, autophagy and epigenetic remodeling, largely through coordinated effects on transcriptional (for example, Nrf2, MAPK, NF-κB and AP-1), post-transcriptional (microRNAs and messenger RNAs) and epigenetic (DNA methyltransferases and histone deacetylases) networks. We then examine how functional nucleic acids, including aptamers, small interfering RNAs, microRNAs and tetrahedral DNA nanostructures, can be engineered to guide SFN to tumor cells, amplify pathway-specific effects and overcome resistance. Particular emphasis is placed on nanotechnology-enabled delivery platforms that enhance SFN stability, bioavailability and tumor selectivity. Finally, we outline key challenges, such as context-dependent Nrf2 activity, inter-individual variability in metabolism and incomplete clinical validation, and propose priorities for translating SFN-based functional nucleic acid systems into rational, combination-ready strategies for precision oncology. Full article

We performed a protein-docking study for eight DNA aptamers (SEQ1–SEQ8) against chicken Cluster of Differentiation 40 (chCD40), which were experimentally identified via SELEX in our previous study. In silico and molecular docking analyses were performed to predict and obtain the secondary and tertiary structures of the aptamers. Aptamers SEQ3 and SEQ4, which showed the best inhibitory effects, were selected and utilized to produce a DNA-based vaccine adjuvant using rolling circle amplification (RCA). These aptamers had been previously characterized via mass spectroscopy to determine their molecular weight and regions that could potentially interact with chCD40. In the present study, these results were corroborated and expanded. A series of free software methods, including Mfold v.1.0, 3dADN v.2.0, ClusPro v.2.0, Hdock v.1.0, and PLIP v.1.0, were used to determine the aptamers’ secondary and tertiary structures and docking interactions, as well as the specific residues involved in the interactions and their distances. The structures were used to explain and thus understand their effect on the binding, selectivity, and stability of the aptamers. The main objective of the study was to determine whether these aptamers could be used as vaccine adjuvants against viral and bacterial pathogens, specifically chicken avian influenza. The docking results were in good agreement with the experimental and biological results. The procedure employed in this study could be an easy and effective tool for exploring the potential of the new technology of systematic evolution of ligands by exponential enrichment (SELEX) in the preparation of aptamers to control viral and bacterial infections as well as diseases, such as cancer and Alzheimer’s. Full article

Mercury ions (Hg²⁺), a heavy metal contaminant of strong biotoxicity, pose a serious threat to ecosystems and human health in aquatic environments. Developing highly sensitive and specific detection methods is therefore of great importance. This study presents a novel label-free fluorescent biosensor for Hg²⁺ by ingeniously coupling target-induced aptamer switching with rolling circle amplification (RCA). Upon Hg²⁺ binding, the conformational change releases a sequestered primer to initiate RCA, generating G-quadruplex-rich DNA products that produce a strong “turn-on” signal with N-methylmesoporphyrin IX (NMM). Under optimized conditions, the assay exhibits excellent linearity from 10 to 1000 nM with a detection limit of 3.2 nM, along with high selectivity over competing metal ions. Validation using spiked environmental water samples yielded accurate and reproducible recoveries in the range of 93.8% to 106.0%. With its operational simplicity, high sensitivity, and robust performance in complex matrices, this label-free strategy offers a reliable and promising platform for detecting Hg²⁺ in environmental waters. Full article

Heavy metal mercury is one of the most significant and toxic environmental contaminants. Its inorganic form (Hg²⁺) and organic form (organic mercury, OrHg) can cause irreversible harm to human health and the ecological environment, and the latter is particularly prone to bioaccumulation and bioamplification in the food chain. Therefore, there is an urgent need for a rapid, reliable and specific detection of Hg²⁺ and OrHg to evaluate the potential risk for human health. Here, a novel label-free fluorescent sensing platform based on ssDNA aptamer (A_A-T7)-templated AuNCs was established for sensitive recognition and specific detection of Hg²⁺ and OrHg. In the presence of OrHg, the fluorescence of pure A_A-T7-templated AuNCs was visibly enhanced through forming Ag/AuNCs based on Ag⁰-doped AIEE effect. However, they were obviously quenched because of generating non-fluorescent Au/Ag/Hg ANPs via metallophilic interactions among Au³⁺, Ag⁺, and Hg²⁺ (5d¹⁰-4d¹⁰-5d¹⁰) when only Hg²⁺ existed. This fluorescent sensing platform could detect as low as 20.0 nM (4.0 ng Hg/g) and has a good linear detection range, with target concentrations ranging from 0.25 μM to 2.00 μM, recoveries of 98.0–108.0%, and RSD ≤ 5.0%. Low-toxic A_A-T7-templated AuNCs could be used for cytotoxicity analysis and intracellular fluorescent imaging. The method has been successfully applied to the determination of Hg²⁺ and OrHg in tap water, seawater and dried golden pomfret fish muscle samples, demonstrating promising prospects for the assay of mercury species in environmental samples and aquatic products to ensure human health and food safety. Full article

Salmonella enteritidis (SE) is recognized as a primary etiological agent of foodborne infection and food poisoning. Selective and sensitive determination of SE in animal-derived products is of great importance for ensuring safety in the food industry. Here, we report a highly sensitive and specific competition assay for detecting SE in eggs without interference from background fluorescence, by using persistent luminescent nanoparticles (PLNPs) as luminescent probes in combination with aptamer recognition and magnetic separation. Initially, the SE-specific aptamer (SEapt), as previously reported, was conjugated onto the surface of Fe₃O₄ magnetic nanoparticles to serve as both the recognition and separation unit. Meanwhile, the ZnGa₂O₄:Cr (PLNPs) were functionalized with the aptamer-complementary DNA (cDNA), serving as the PL signal generator. The constructed PL aptasensor is composed of the aptamer-conjugated MNPs (MNPs-SEapt) and cDNA-functionalized PLNPs (PLNPs-cDNA), integrating the merits of the long-lasting luminescence of PLNPs, the magnetic separation ability of MNPs and the selectivity of the aptamer. This integration offers a promising approach for autofluorescence-free determination of SE in food samples. The proposed aptasensor exhibited excellent linearity in the range from 1.0 × 10²–1.0 × 10⁷ CFU mL⁻¹ with a limit of detection as low as 32 CFU mL⁻¹. The precision for 11 replicate determinations of 1.0 × 10³ CFU mL⁻¹ SE was 3.4% (relative standard deviation). The developed aptasensor achieved recoveries ranging from 98.8% to 102.8% for the determination of SE in the presence of common foodborne bacterial interferents. The method was successfully applied to the analysis of Salmonella genus in egg samples. In principle, the proposed platform may be adapted to other food matrices by substituting the target-specific aptamer, pending target-dependent optimization and validation. Full article

Bone defects remain a significant challenge in bone tissue engineering, driving an urgent need for advanced materials with enhanced therapeutic properties. Additive manufacturing highlights a unique capacity for customization, which enables the precise realization of complex and personalized composite scaffolds. This study innovatively integrates the superior mechanical properties of polycaprolactone (PCL) with the antibacterial characteristics of S53P4 bioactive glass. Utilizing thermal melt extrusion processing and fused deposition modeling (FDM) technology, we fabricated gradient-structured S53P4@PCL composite three-dimensional porous scaffolds with varying doping ratios (5 wt%, 10 wt%, 20 wt%). To further improve the antibacterial efficacy of the scaffold, exosomes (EXO) derived from grouper eggs were functionalized with bacteria-targeting aptamers (APTs), a type of functional DNA capable of binding to bacterial peptidoglycan, and EXO-APT-20%S53P4@PCL was fabricated. The resulting EXO-APT-20%S53P4@PCL scaffold was able to facilitate the targeted capture and subsequent eradication of bacteria. This study pioneers the synergistic integration of aptamer-modified exosomes into 3D composite scaffolds. Our analysis confirmed that the incorporation of APTs enabled targeted bacterial capture, and antibacterial EXO further enhanced the overall bacterial killing capability of the S53P4@PCL scaffolds. The fabrication of porous S53P4@PCL scaffolds through an innovative composite-molding strategy, combined with EXO-APT functionalization, establishes a new paradigm for customized bone repair. Full article