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Search Results (213)

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Keywords = CYP9K1

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2 pages, 176 KB  
Abstract
Effects of Temperature Increase and Benzo[k]fluoranthene on Viability and CYP1A Response in Brown Trout Hepatocytes
by Margarida Vilaça, Rosária Seabra, Maria João Rocha, Eduardo Rocha and Célia Lopes
Proceedings 2026, 146(1), 65; https://doi.org/10.3390/proceedings2026146065 (registering DOI) - 18 Jun 2026
Viewed by 46
Abstract
Introduction: The temperature of rivers in the Iberian Peninsula has increased due to global warming. In addition, these rivers are polluted by contaminants of emerging concern, such as polycyclic aromatic hydrocarbons (PAHs). Higher temperatures and pollution concurrently impose threats to the Iberian [...] Read more.
Introduction: The temperature of rivers in the Iberian Peninsula has increased due to global warming. In addition, these rivers are polluted by contaminants of emerging concern, such as polycyclic aromatic hydrocarbons (PAHs). Higher temperatures and pollution concurrently impose threats to the Iberian Peninsula’s endemic species, including the brown trout (Salmo trutta), a cold-water species widely used in ecotoxicological studies. Because the liver is the main biotransformation organ, and is particularly sensitive to both chemical and temperature changes, in vitro liver models may represent valuable alternatives for assessing combined stressor effects, complying with the 3Rs principle. Objective: In line with the above, the present study aimed to evaluate the combined effects of a 4 °C temperature increase and the model PAH benzo[k]fluoranthene (B[k]F) on fish liver cells using a primary brown trout hepatocyte culture as a model. Methodology: Primary hepatocytes were seeded in 6-well plates at a density of 1.0 × 106 cells/mL and exposed for 48 h to 1, 10, and 20 µM B[k]F at 18 °C (normothermia) and 22 °C (warming scenario). Cell viability was assessed using trypan blue, alamarBlue, and lactate dehydrogenase (LDH) assays. Cytochrome P450 (CYP)1A was evaluated in terms of its gene expression by RT-qPCR and its protein expression through immunocytochemistry (ICC). The immunostaining was quantified using a score system which considered five intensity staining levels. Results: Exposure to B[k]F and to the higher temperature increased LDH leakage without interaction effects. In contrast, the other viability assays did not show significant differences across conditions. Regarding CYP1A, both gene and protein expression increased with all B[k]F concentrations in relation to the controls, but were not influenced by temperature. Notably, the lowest B[k]F concentration (1 µM) elicited the highest CYP1A gene expression, suggesting a non-monotonic response. Conclusions: Overall, the model was responsive to both temperature (4 °C) increase and to B[k]F, validating its usefulness for assessing liver pollutant effects in the context of global warming. These findings support the application of fish primary hepatocyte models as relevant tools in ecotoxicology under environmentally realistic multi-stressor scenarios. Full article
(This article belongs to the Proceedings of The XI Iberian Congress of Ichthyology)
38 pages, 3490 KB  
Review
Multi-Targeted Intervention of Eucommia ulmoides and Its Bioactive Constituents Against Metabolic Syndrome: From Molecular Mechanisms and Gut Microbiota Modulation to Clinical Translation
by Fanjia Cheng, Chenghao Lv, Yuhang Yi, Dongsheng Wang, Wenbo Wang, Tao Li, Runze Zhou, Qili Li and Si Qin
Metabolites 2026, 16(6), 411; https://doi.org/10.3390/metabo16060411 - 12 Jun 2026
Viewed by 163
Abstract
Background/Objectives: Metabolic syndrome (MetS) is a pressing global health challenge comprising obesity, hyperglycemia, hypertension, and hyperlipidemia. Conventional polypharmacy often presents long-term compliance issues and side effects. Eucommia ulmoides Oliv., a traditional medicinal and edible plant rich in iridoids, lignans, flavonoids, and polysaccharides, has [...] Read more.
Background/Objectives: Metabolic syndrome (MetS) is a pressing global health challenge comprising obesity, hyperglycemia, hypertension, and hyperlipidemia. Conventional polypharmacy often presents long-term compliance issues and side effects. Eucommia ulmoides Oliv., a traditional medicinal and edible plant rich in iridoids, lignans, flavonoids, and polysaccharides, has emerged as a promising natural intervention. This review aims to systematically summarize the bioavailability and multifaceted pharmacological mechanisms of E. ulmoides and its bioactive components in alleviating MetS. Methods: We comprehensively reviewed the recent in vitro and in vivo literature to map the functional evidence, specific signaling pathways, and gut microbiota–host interactions associated with E. ulmoides extracts and its key phytochemicals (e.g., asperuloside) against various metabolic dysfunctions. Results: Current evidence indicates that E. ulmoides operates through a “multi-component, multi-target, and multi-pathway” paradigm. For hyperlipidemia and obesity, it activates hepatic lipid metabolism (PPARα/CPT1A, FXR/CYP7A1) and mitigates oxidative stress (Nrf2/ARE). Furthermore, it dose-dependently reshapes the gut microbiota by enriching beneficial bacteria like Akkermansia and increasing butyrate production, exerting profound gut–liver axis regulation. It also ameliorates hypertension by activating the ACE2-Ang-(1–7)-Mas axis, improves insulin resistance via the AMPK/PI3K/Akt cascade, and manages hyperuricemia by modulating XOD and renal transporters. Notably, the low oral bioavailability of its glycosides highlights the crucial role of gut microbial hydrolysis in its efficacy. Conclusions: E. ulmoides holds substantial therapeutic potential as a multi-target natural supplement for MetS. However, future translational applications necessitate large-scale randomized clinical trials, multi-omics studies to further clarify host–microbiome interactions, and the development of standardized formulations to ensure clinical efficacy. Full article
(This article belongs to the Special Issue The Impact of Polyphenols on Metabolic Health and Disease)
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22 pages, 3677 KB  
Article
Transcriptomic Analysis Suggests Shoots and Roots-Specific Antioxidant Responses to Early-/Long-Term Salt Stress in Brassica napus
by Xianmin Meng, Lei Lei, Weirong Wang, Hongwei Li and Jifeng Zhu
Antioxidants 2026, 15(6), 708; https://doi.org/10.3390/antiox15060708 - 3 Jun 2026
Viewed by 260
Abstract
Salinity stress progressively restricts rapeseed (Brassica napus L.) growth and productivity. However, the molecular mechanism underlying its tolerance remains poorly understood. This study aims to shed light on differential responses between shoots and roots, and further clarify the regulatory mechanisms of ion [...] Read more.
Salinity stress progressively restricts rapeseed (Brassica napus L.) growth and productivity. However, the molecular mechanism underlying its tolerance remains poorly understood. This study aims to shed light on differential responses between shoots and roots, and further clarify the regulatory mechanisms of ion homeostasis and oxidative defense under early-and long-term salt stress. Under salt stress, the Na+/K+ ratio increased by 46.26% and 26.33% in shoots and roots, respectively. Activities of SOD and POD increased in both tissues, while CAT activity declined in shoots. MDA content was significantly higher in roots. Transcriptome PCA clearly separated samples of early-term (3–48 h for shoots, 3–24 h for roots) from long-term (72 h 25 d for shoots, 48 h 25 d for roots) salt stress. SOD2 and UGT72E1 were significantly up-regulated in shoots but down-regulated in roots. CAT2 exhibited strongly up-regulation in roots than shoots, whereas RBOHC was markedly down-regulated in roots relative to shoots. Additionally, CAT1 was mainly up-regulated at the early-term salt stress. Most DEGs involved in phenylpropanoid biosynthesis (CYP73A5, PAL2, CCR1/2, CAD1/5, COMT1 and PER66) were up-regulated in both tissues. Notably, HCT and CSE exhibited a striking tissue-specific antioxidant pattern, down-regulated in shoots but up-regulated in roots. PER34 was specifically induced at early-term, and PER31/63/169 were exclusively activated under long-term salt stress in roots. Moreover, we performed weighted gene co-expression network analysis (WGCNA) to describe tissue- and time-specific transcriptional dynamics that occur in rapeseed under salt stress. Several hub genes, including ABI5, MPK6, CAD5, NADK1 and LFG2, exhibited high correlations with early-term salt stress responses in roots. These genes are mainly enriched in transcription factors and hormone signaling pathways, and function in antioxidant defense and redox homeostasis. This study suggests distinct spatiotemporal salt stress response patterns in rapeseed and identifies key genes for salt-tolerance breeding. Full article
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22 pages, 1460 KB  
Article
Enhanced Toxicity, Physiological Disruption, and Population Growth Suppression Induced by Nanoemulsified Satureja hortensis Essential Oil on Spodoptera frugiperda
by Zahra Afrazeh, Marziyeh Oftadeh, Azim Nemati, Jalal Jalali Sendi, Asgar Ebadollahi and William N. Setzer
Plants 2026, 15(11), 1598; https://doi.org/10.3390/plants15111598 - 22 May 2026
Viewed by 675
Abstract
Although the effectiveness of plant-derived essential oils (EOs) against several insect pests is well-documented, their high volatility presents a challenge. In this study, the potential to enhance the insecticidal activity of Satureja hortensis L. EO, an accessible natural agent, through nanoemulsification was assessed [...] Read more.
Although the effectiveness of plant-derived essential oils (EOs) against several insect pests is well-documented, their high volatility presents a challenge. In this study, the potential to enhance the insecticidal activity of Satureja hortensis L. EO, an accessible natural agent, through nanoemulsification was assessed against the cosmopolitan pest Spodoptera frugiperda (J. E. Smith, 1797). The nanoemulsion of the EO (NEEO) was prepared using Tween 80 as the emulsifying agent and high-intensity ultrasonication. Oral bioassays indicated that the NEEO was more toxic (LC50 = 0.922%) than the pure EO (LC50 = 1.186%). Sublethal exposure to LC30 of the NEEO caused evident reductions in preadult survival, developmental time, fecundity, and oviposition period, as well as the population growth parameter net reproductive rate (R0). The exposure to the NEEO increased catalase (CAT), glutathione S-transferase (GST), and superoxide dismutase (SOD) actions and inhibited α-esterase (α-NE), β-esterase (β-NE), and cytochrome P450 (CYP450) actions. Both the NEEO and EO inhibited acetylcholinesterase (AChE) and Na+/K+-ATPase, with higher inhibition in the NEEO group. Generally, S. hortensis NEEO enhanced toxicity, intensified physiological perturbations, and caused greater negative impacts on population growth parameters. Consequently, nanoemulsification of S. hortensis EO can be considered an effective method to strengthen the insecticidal potential of this natural agent. Full article
(This article belongs to the Special Issue Plant Natural Products for Sustainable Disease and Pest Management)
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21 pages, 11226 KB  
Article
Population Structure Analysis and Candidate Gene Screening for Twinning Trait in Simmental Cattle
by Kailun Ma, Xiaoyun Liang, Lei Xu, Xue Li, Hongkun Zhao, Jiajie Huang, Jingjing Wen, Menghua Zhang, Dan Wang, Xixia Huang and Qiuming Chen
Animals 2026, 16(10), 1567; https://doi.org/10.3390/ani16101567 - 21 May 2026
Viewed by 357
Abstract
Chinese Simmental cattle are a high-quality breed developed through long-term crossbreeding and selection after their introduction into China and have become the main dual-purpose cattle population in the Xinjiang region. To deeply dissect the population structure, characteristics of the population structure, and the [...] Read more.
Chinese Simmental cattle are a high-quality breed developed through long-term crossbreeding and selection after their introduction into China and have become the main dual-purpose cattle population in the Xinjiang region. To deeply dissect the population structure, characteristics of the population structure, and the genetic basis of the twinning trait, this study focused on Xinjiang Chinese Simmental cattle as the main research subject. It integrated genomic data from global public databases to systematically conduct population structure analysis, genetic relationship analysis, and genome-wide selection signature analysis. Population genetic analysis revealed that the IBS matrix and G matrix indicated that some individuals from different geographical origins exhibited distant genetic relationships; the Xinjiang population showed the fastest LD decay, suggesting abundant genetic diversity; the inbreeding coefficient based on Runs of Homozygosity (ROH) across populations ranged from 0.036 to 0.063; principal component analysis and phylogenetic tree showed that some individuals from different geographical origins had certain genetic interconnections; admixture analysis indicated that K = 5 was the optimal model, with each population exhibiting clear genetic differentiation and admixture characteristics. Furthermore, by combining Fst and θπ analysis (comparing the Xinjiang population with other geographical populations), a total of 89 candidate genes associated with the twinning trait in Xinjiang Chinese Simmental cattle were screened, including CYP19A1, HORMAD1, GRB14, CADM2, CXCR4, and others that have been reported to be closely related to oogenesis and reproductive function. In summary, this study explores genome-wide genetic differences among Simmental cattle populations from different regions, deepens our understanding of their population structures, and offers new candidate genes and molecular markers for high-fecundity breeding in Simmental cattle. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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16 pages, 3681 KB  
Article
Application of Machine Learning Models for Predicting pIC50 Values of Plasticizers Against Cytochrome P450 Aromatase
by Itumeleng Lucky Mongadi, Nomasonto Rapulenyane, Walter Bonke Mahlangu and Jean-Nazaire Oyourou
Chemistry 2026, 8(5), 68; https://doi.org/10.3390/chemistry8050068 - 20 May 2026
Viewed by 667
Abstract
This study investigated the application of six machine learning regression algorithms such as Random Forest, CatBoost, K-Nearest Neighbours, XGBoost, LightGBM, and Gradient Boosting, paired with Molecular ACCess System (MACCS) key fingerprints for the quantitative prediction of aromatase (CYP19A1) inhibitory potency, expressed as pIC [...] Read more.
This study investigated the application of six machine learning regression algorithms such as Random Forest, CatBoost, K-Nearest Neighbours, XGBoost, LightGBM, and Gradient Boosting, paired with Molecular ACCess System (MACCS) key fingerprints for the quantitative prediction of aromatase (CYP19A1) inhibitory potency, expressed as pIC50. A dataset of 187 compounds was assembled from the ChEMBL database (version 33, Target ID: CHEMBL1978) following by systematic data curation workflow encompassing duplicate removal, pIC50 transformation, and activity-based filtering. Model performance was rigorously evaluated using an 80/20 stratified train/test split, 5-fold cross-validation, and Y-randomisation testing to ensure unbiased assessment of predictive generalisation. Feature selection via CatBoost permutation importance on the held-out test set identified the top 20 predictive MACCS keys from an initial 166-bit space, substantially reducing dimensionality and improving generalisation across all models. Among the algorithms evaluated, CatBoost trained on the top 20 features achieved the strongest test-set performance (R2 = 0.693, RMSE = 0.794, MAE = 0.659) with the most stable cross-validation R2 (0.062 ± 0.304), outperforming all other algorithms. Y-randomisation testing returned an empirical p-value of <0.01, confirming that model performance reflects genuine structure–activity relationships rather than statistical chance. Permutation importance and SHAP analysis identified nitrogen-containing heterocyclic fragments (MACCS_41, MACCS_145) and halide-bearing substructures (MACCS_109) as the primary structural determinants of aromatase inhibitory potency, consistent with established CYP19A1 pharmacophoric requirements. Application of the model to ten representative plasticizers demonstrated that the refined applicability domain (h* = 0.423) accommodated eight of the ten compounds, enabling reliable potency predictions across phthalate esters and bisphenol analogues. These findings establish a transparent and reproducible QSAR framework for first-tier endocrine disruption risk screening of plasticizers and highlight the importance of permutation-based feature selection and applicability domain assessment in QSAR model development. Full article
(This article belongs to the Special Issue AI and Big Data in Chemistry)
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23 pages, 8570 KB  
Article
The Heterogeneous Nuclear Ribonucleoprotein K (hnrnpk) Gene Targeted by miR-460a-5p Functions in the Gonadal Differentiation and Development in Chinese Tongue Sole (Cynoglossus semilaevis)
by Kaimin Li, Haipeng Yan, Qi Liu, Wenjie Li, Chengbin Gao and Songlin Chen
Animals 2026, 16(9), 1327; https://doi.org/10.3390/ani16091327 - 27 Apr 2026
Viewed by 864
Abstract
Chinese tongue sole (Cynoglossus semilaevis), an economically important mariculture species in China, exhibits pronounced sexual dimorphism in growth, underscoring the importance of elucidating sex regulatory mechanisms for aquaculture development. Heterogeneous nuclear ribonucleoprotein K (hnrnpk) critically regulates mammalian reproductive development, [...] Read more.
Chinese tongue sole (Cynoglossus semilaevis), an economically important mariculture species in China, exhibits pronounced sexual dimorphism in growth, underscoring the importance of elucidating sex regulatory mechanisms for aquaculture development. Heterogeneous nuclear ribonucleoprotein K (hnrnpk) critically regulates mammalian reproductive development, yet its role in fish sex regulation remains elusive. Here, we systematically investigated the underlying function and mechanisms of hnrnpk in C. semilaevis through integrated molecular cloning, expression profiling, upstream regulatory analysis, functional assays, and transcriptome sequencing. We found that hnrnpk was highly expressed in the gonad and liver, with female-biased expression during gonadal development. Promoter activity assays revealed that sox2 and c-Jun enhanced hnrnpk transcription, whereas foxl2 and ar suppressed it. Additionally, hnrnpk was directly targeted by miR-460a-5p in C. semilaevis, revealing multi-level transcriptional and post-transcriptional regulation. Functional analyses showed that hnrnpk regulated cyp19a1a in a cell type-dependent and dose-sensitive manner: the expression of cyp19a1a was both upregulated in hnrnpk-knockdown ovarian cells and hnrnpk-overexpression testicular cells. Interestingly, foxl2 was upregulated in hnrnpk-knockdown ovarian cells but suppressed in hnrnpk-overexpression testicular cells, which showed the distinct regulation mechanisms in the different sexual programs. Transcriptomic analyses further revealed that several sex-related genes (sox9a with downregulation, etc.) were significantly regulated, and cell development and cycle pathways were dramatically enriched in functional enrichment analyses. This might indicate that hnrnpk overexpression drives C. semilaevis testis (CSTE) toward feminization reprogramming through sox9 switching and multi-pathway perturbations. Overall, our findings might reveal that hnrnpk, a female-biased gene regulated by miR-460a-5p and transcription factors, influences sex-related gene expression through sox9 switching. This study will offer new insights for C. semilaevis hnrnpk into sex determination and also provide a potential target for monosex breeding in aquaculture. Full article
(This article belongs to the Special Issue Morphological and Physiological Research on Fish: Second Edition)
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10 pages, 226 KB  
Article
Molecular and Phenotypic Characterization of Multidrug-Resistant Aspergillus fumigatus Clinical Isolates in Republic of Korea
by Yun Ha Lee, Yewon An, Yu Jin Lee, Jihee Lee, Su Yeon Kim and Byung Hak Kang
J. Fungi 2026, 12(5), 302; https://doi.org/10.3390/jof12050302 - 22 Apr 2026
Viewed by 830
Abstract
Genetic diversity and antifungal susceptibility profiles of Aspergillus fumigatus are critical for understanding the evolution of resistance in clinical and environmental settings. We performed comprehensive genomic characterization of A. fumigatus isolates using whole-genome sequencing combined with phenotypic susceptibility assays. SnpEff-based variant annotation identified [...] Read more.
Genetic diversity and antifungal susceptibility profiles of Aspergillus fumigatus are critical for understanding the evolution of resistance in clinical and environmental settings. We performed comprehensive genomic characterization of A. fumigatus isolates using whole-genome sequencing combined with phenotypic susceptibility assays. SnpEff-based variant annotation identified 76,079 single-nucleotide polymorphisms, revealing a high proportion of mutations (78.8%) in upstream and downstream regulatory regions, whereas high-impact coding variants remained rare (0.083%). Several key mutations were identified, including the well-established cyp51A M220V and HMG1 S212P/Y564H mutations. Moreover, a diverse array of peripheral cyp51A polymorphisms (M39I, E402D, N248K, and K372N) was detected, although these variants did not correlate with the resistant phenotypes. Our comparative genomic analysis identified a novel A586T substitution in the FKS1 gene in an isolate with an elevated minimum effective concentration of caspofungin, suggesting its possible association with reduced susceptibility, although functional validation is required. In isolates lacking canonical target-site mutations, the high frequency of regulatory-region variants indicated the involvement of non–target-site mechanisms. This study provides a detailed map of the genomic landscape of A. fumigatus and identifies candidate loci for future functional validation. Our results demonstrate the utility of high-throughput genomic surveillance for monitoring emerging resistance trends and characterizing the genetic background of clinical fungal pathogens. Full article
(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
23 pages, 3418 KB  
Article
Biotransformation of Maclekarpine E in Rats: CYP2C19-Mediated Metabolism, Fecal Enrichment, and Network Pharmacology-Based Anti-Ulcerative Colitis Prediction
by Yingxue Yang, Lin Wang, Jiaojiao Xue, Zhen Dong and Pi Cheng
Curr. Issues Mol. Biol. 2026, 48(3), 335; https://doi.org/10.3390/cimb48030335 - 23 Mar 2026
Viewed by 599
Abstract
Maclekarpine E is a minor alkaloid from Macleaya species with reported in vitro anti-inflammatory activity, but its in vivo metabolism remains unexplored. This study investigated the metabolic fate of maclekarpine E in rats and evaluated the potential pharmacological relevance of its metabolites. Maclekarpine [...] Read more.
Maclekarpine E is a minor alkaloid from Macleaya species with reported in vitro anti-inflammatory activity, but its in vivo metabolism remains unexplored. This study investigated the metabolic fate of maclekarpine E in rats and evaluated the potential pharmacological relevance of its metabolites. Maclekarpine E was orally administered to male Sprague-Dawley rats (250 mg/kg). Plasma, urine and feces were collected and analyzed by UPLC-Q-TOF-MS/MS. CYP phenotyping was performed using recombinant human enzymes. Molecular docking against ABCG2 and ABCC2 was conducted to assess potential interactions of all fecal compounds with these efflux transporters. Network pharmacology was employed to predict potential anti-ulcerative colitis-related targets of the metabolites, generating hypotheses for future experimental validation. Nineteen phase I metabolites were identified. Biotransformations included ring-opening, demethylation and oxidation. All 19 metabolites were detected in feces, nine in plasma and two in urine. No phase II conjugates were observed. CYP2C19 was the only significantly active isoform under the tested conditions, mediating approximately 16.5% substrate depletion (p < 0.05). All 20 fecal compounds bound ABCG2 (ΔG < −5.0 kcal/mol); 19 bound ABCC2. Network pharmacology yielded 57 overlapping targets with ulcerative colitis, enriched in PI3K-Akt and MAPK pathways. This study provides the first comprehensive metabolic profile of maclekarpine E in rats. The compound undergoes CYP2C19-mediated oxidation and is predominantly excreted into feces. Its fecal metabolites are potential ABCG2/ABCC2 substrates and may target UC-associated pathways based on network pharmacology predictions, warranting further experimental validation. Full article
(This article belongs to the Special Issue Natural Products in Biomedicine and Pharmacotherapy, 2nd Edition)
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26 pages, 4272 KB  
Article
Modeling Chronic BaP Exposure in Bronchial Epithelial Cells Reveals Multi-Scale Drivers of Early Preneoplastic Reprogramming
by Cristian Andrade-Madrigal, Cecilia Rojas-Fuentes, Javier Díaz-Mijares, Gloria M. Calaf, Pablo M. Santoro, Alejandro H. Corvalán, Francisca J. Medina, Cristian G. Torres, Paula Romero-Vicencio, Julio C. Tapia, Mónica L. Acevedo, Ricardo Soto-Rifo, Enrique Boccardo and Francisco Aguayo
Cells 2026, 15(6), 566; https://doi.org/10.3390/cells15060566 - 22 Mar 2026
Viewed by 1461
Abstract
Chronic exposure to benzo[a]pyrene (BaP), a Group 1 IARC carcinogen, is a major driver of lung carcinogenesis; however, how sustained subcytotoxic exposure reprograms bronchial epithelium toward preneoplastic states remains poorly defined. Here, we subjected BEAS-2B human bronchial epithelial cells to 12 weeks of [...] Read more.
Chronic exposure to benzo[a]pyrene (BaP), a Group 1 IARC carcinogen, is a major driver of lung carcinogenesis; however, how sustained subcytotoxic exposure reprograms bronchial epithelium toward preneoplastic states remains poorly defined. Here, we subjected BEAS-2B human bronchial epithelial cells to 12 weeks of continuous BaP at environmentally relevant concentrations (0.1 and 1.0 µM) and interrogated the resulting phenotypes using an integrated multi-scale framework encompassing functional toxicology, RT-qPCR, RNA-seq, phospho-kinase/NF-κB arrays, and organotypic air–liquid interface (ALI) cultures. Cells maintained metabolic competence throughout, evidenced by sustained CYP1A1 and CYP1B1 induction at both acute (4 h) and chronic (12-week) timepoints, while accumulating genotoxic stress as demonstrated by dose-dependent nuclear γ-H2AX foci formation and ATM phosphorylation (Ser1981). RNA-seq revealed a dose-dependent transcriptional shift: 0.1 µM BaP yielded 119 differentially expressed genes (DEGs; |log2FC| ≥ 1, FDR < 0.05), whereas 1.0 µM generated 255 DEGs. Downregulated transcripts were enriched for extracellular matrix and cell-adhesion programs (COL14A1, ADAMTS2, CSMD3, CADM3), while upregulated genes encompassed inflammatory, calcium-signaling, and vesicle-trafficking modules (NFATC4, CSF2RA, SYT1, PCLO). Phospho-kinase/NF-κB arrays confirmed a p53/NF-κB signaling nexus, with concurrent activation of MAPK/ERK (Thr202/Tyr204) and PI3K/Akt (Ser473) pathways. Despite persistent genotoxic stress, cells did not acquire anchorage-independent growth and remained non-tumorigenic in vivo. Critically, ALI organotypic cultures derived from BaP-exposed cells exhibited histological dysplasia, nuclear pleomorphism, and disrupted apical-basal polarity. These findings mechanistically link chronic BaP exposure to an initiation-like preneoplastic state and establish a validated 2D/3D multi-omics platform for PAH-driven lung carcinogenesis research. Full article
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21 pages, 11189 KB  
Article
Cyclophilin D, Regulator of Mitochondrial Permeability Transition and Bioenergetics, Promotes Adipogenic Differentiation of Mesenchymal Stem Cells
by Chen Yu, Sarah E. Catheline and Roman A. Eliseev
Cells 2026, 15(6), 509; https://doi.org/10.3390/cells15060509 - 13 Mar 2026
Viewed by 812
Abstract
During aging, bone marrow stromal (a.k.a. mesenchymal stem) cells (BMSCs) shift their lineage commitment away from osteogenesis and towards adipogenesis, resulting in bone loss and marrow fat accumulation. We previously reported that during osteogenesis, BMSCs activate mitochondrial oxidative phosphorylation (OXPHOS) at least in [...] Read more.
During aging, bone marrow stromal (a.k.a. mesenchymal stem) cells (BMSCs) shift their lineage commitment away from osteogenesis and towards adipogenesis, resulting in bone loss and marrow fat accumulation. We previously reported that during osteogenesis, BMSCs activate mitochondrial oxidative phosphorylation (OXPHOS) at least in part by downregulating cyclophilin D (CypD) expression and, consequently, mitochondrial permeability transition pore (MPTP) activity. We also reported that in contrast, during adipogenesis, BMSCs upregulate CypD and MPTP, activate glycolysis and inhibit OXPHOS. To further study the role of CypD in BMSC bioenergetics, adipogenesis and bone marrow fat accumulation, we used CypD loss-of-function (LOF) or gain-of-function (GOF) models in osteo-adipoprogenitors in vitro and in vivo. We found that CypD LOF and GOF are associated with impaired and enhanced BMSC adipogenesis, respectively, both in vitro and in ectopic bone grafts in vivo. In addition, bioenergetic profiling and metabolomic analyses show evidence of corresponding metabolic reprogramming in CypD LOF and GOF cells. In summary, our study demonstrates the role of CypD-regulated mitochondrial metabolism during BMSC adipogenesis, facilitating the understanding of stem cell fate determination and the molecular mechanism of age-related bone loss as well as bone marrow fat accumulation. Full article
(This article belongs to the Special Issue Mitochondria at the Crossroad of Health and Disease—Second Edition)
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15 pages, 4957 KB  
Article
PRSS23 Promotes Ovarian Follicular Atresia in Wuding Chickens by Coordinately Suppressing Steroidogenesis and PI3K/AKT/mTOR Survival Signaling
by Cailing Wang, Wei Zhu, Enmin Wan, Jinda Li, Xinyang Fan and Yongwang Miao
Genes 2026, 17(3), 272; https://doi.org/10.3390/genes17030272 - 27 Feb 2026
Cited by 1 | Viewed by 834
Abstract
Background: Broodiness is a major limiting factor for reproductive efficiency in indigenous avian breeds, a phenomenon underpinned physiologically by granulosa cell (GC) apoptosis and subsequent follicular atresia. While Serine Protease 23 (PRSS23) has been implicated in mammalian ovarian remodeling, its specific regulatory [...] Read more.
Background: Broodiness is a major limiting factor for reproductive efficiency in indigenous avian breeds, a phenomenon underpinned physiologically by granulosa cell (GC) apoptosis and subsequent follicular atresia. While Serine Protease 23 (PRSS23) has been implicated in mammalian ovarian remodeling, its specific regulatory function in avian follicular dynamics remains elusive. Methods: Utilizing the Wuding chicken—an indigenous breed distinguished by robust environmental adaptability but compromised by high broodiness frequency—as a biological model, this study dissected the molecular mechanism of PRSS23-mediated follicular regression. We cloned the complete coding sequence of the Wuding chicken PRSS23 gene, characterized its spatiotemporal expression profile, and interrogated its function in primary GCs via gain- and loss-of-function assays. Results: RT-qPCR analysis revealed that PRSS23 is differentially expressed across the hypothalamic–pituitary–ovarian (HPO) axis, with ovarian expression being significantly upregulated during the broody period compared to the laying period. Mechanistically, PRSS23 overexpression significantly downregulated the expression of follicle-stimulating hormone receptor (FSHR) and key steroidogenic enzymes (STAR, CYP19A1, HSD3β1), thereby suppressing the expression of genes governing the biosynthesis potential of progesterone and estradiol. Concurrently, PRSS23 overexpression was associated with transcriptional repression of components of the PI3K/AKT/mTOR signaling cascade; this transcriptional regulation further induced cell cycle arrest at the G0/G1 phase, and activated the mitochondrial apoptotic pathway characterized by BAX upregulation and BCL2 downregulation. Conversely, siRNA-mediated knockdown of PRSS23 alleviated these inhibitory effects, promoting GC proliferation and survival. Conclusions: These findings establish PRSS23 as a pivotal pro-atretic factor in Wuding chickens, driving ovarian atrophy through the dual transcriptional-level inhibition of steroidogenesis and survival signaling pathways. This study identifies a potential molecular target for marker-assisted selection programs aimed at attenuating broodiness while preserving the superior meat quality traits of indigenous poultry. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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18 pages, 221265 KB  
Article
ESR2 Regulates Granulosa Cell Proliferation and Steroidogenesis via the PI3K/AKT/mTOR Signaling Pathway in Wuding Chickens
by Chen Li, Wei Zhu, Xinyu Ma, Xinyang Fan, Fu Ha and Yongwang Miao
Biology 2026, 15(4), 370; https://doi.org/10.3390/biology15040370 - 22 Feb 2026
Cited by 1 | Viewed by 679
Abstract
The Wuding chicken, a renowned indigenous breed in Yunnan Province, is prized for its superior meat quality; however, its economic potential is limited by pronounced broodiness and suboptimal egg production. Central to alleviating these constraints is the precise regulation of ovarian granulosa cell [...] Read more.
The Wuding chicken, a renowned indigenous breed in Yunnan Province, is prized for its superior meat quality; however, its economic potential is limited by pronounced broodiness and suboptimal egg production. Central to alleviating these constraints is the precise regulation of ovarian granulosa cell (GC) proliferation and steroidogenic processes that dictate follicular development and laying performance. While Estrogen Receptor 2 (ESR2) is a known transcription factor implicated in follicular maturation, its spatiotemporal dynamics within the hypothalamic-pituitary-ovarian (HPO) axis and its specific regulatory mechanisms in Wuding chicken remain elusive. This study characterizes ESR2 expression across the HPO axis during the laying and broody periods and functionally validates its role in GCs. We observed that ESR2 expression was significantly higher throughout the HPO axis during the laying period compared to the broody period, with the most pronounced differential expression occurring in the ovary. Notably, subcellular localization analysis revealed that ESR2 is distributed in both the nucleus and the cytoplasm, indicating involvement in both nuclear transcriptional regulation and cytoplasmic signaling. Functional assays demonstrated that ESR2 modulates the expression of genes associated with GC proliferation, steroidogenesis, and apoptosis, involving the PI3K/AKT/mTOR signaling pathway. Our findings indicate that this process involves a synergistic interplay between genomic and potential non-genomic actions. Specifically, ESR2 overexpression upregulates the expression of key signaling components and steroidogenic genes, including CYP19A1, STAR, PTGS2, and FSHR, while its cytoplasmic localization suggests a role in non‑genomic interactions. Together, these coordinated mechanisms synergistically maintain GC functional homeostasis. Collectively, these results prove that ESR2 plays an important role in regulating GC homeostasis and follicular development through genomic and non-genomic modes of action. These findings provide a molecular basis for the role of ESR2 in avian follicular development and offer potential targets for improving the reproductive efficiency of Wuding chickens. Full article
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16 pages, 4967 KB  
Article
Spatiotemporal Expression Inversion of CYP11A1 in the HPO Axis and Its Regulation of Granulosa Cell Proliferation via the PI3K/AKT/mTOR Pathway in Wuding Chickens
by Enmin Wan, Wei Zhu, Cailing Wang, Jinda Li, Xinyang Fan and Yongwang Miao
Animals 2026, 16(4), 657; https://doi.org/10.3390/ani16040657 - 19 Feb 2026
Viewed by 543
Abstract
Broodiness in poultry represents a major bottleneck for reproductive performance, governed by complex remodeling of the hypothalamic-pituitary-ovarian (HPO) axis. CYP11A1, the rate-limiting enzyme in steroidogenesis, is essential for hormone synthesis; however, its spatiotemporal dynamics within the HPO axis during reproductive transitions remain unclear. [...] Read more.
Broodiness in poultry represents a major bottleneck for reproductive performance, governed by complex remodeling of the hypothalamic-pituitary-ovarian (HPO) axis. CYP11A1, the rate-limiting enzyme in steroidogenesis, is essential for hormone synthesis; however, its spatiotemporal dynamics within the HPO axis during reproductive transitions remain unclear. Using the Wuding chicken as a model, this study characterized the expression profile and cellular function of CYP11A1. We identified a distinct “ovary-hypothalamus expression inversion” pattern: CYP11A1 expression exhibited an ovary-dominant pattern during the egg-laying period to support folliculogenesis; however, this shifted to a hypothalamus-dominant pattern during the broodiness period. This inversion indicates its active role in central neurosteroid modulation rather than a passive response to HPO axis regression. In vitro assays in granulosa cells (GCs) demonstrated that CYP11A1 overexpression significantly upregulated AKT1 and mTOR transcription, promoted the G0/G1 to S/G2/M cell cycle transition, and enhanced cell proliferation. Conversely, CYP11A1 knockdown arrested the cell cycle and suppressed the PI3K/AKT/mTOR pathway. Additionally, CYP11A1 coordinated the expression of steroidogenic genes (STAR, HSD3B1), reflecting a coupling between steroid metabolism and cell growth. These findings reveal CYP11A1 as a critical molecular node linking HPO axis remodeling, granulosa cell proliferation, and steroidogenesis, providing a potential target for molecular breeding to mitigate broodiness in indigenous chickens. Full article
(This article belongs to the Section Animal Physiology)
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17 pages, 2995 KB  
Article
Computational Approach to Possible Interactions of Gliclazide with Proteins of Inflammatory, Oxidative Stress and Endoplasmic Reticulum Stress Pathways
by Olabisi Tajudeen Obafemi, Ademola Olabode Ayeleso, Blessing Ariyo Obafemi, Jeremiah Oshiomame Unuofin, Adewale Odunayo Oladipo, Sogolo Lucky Lebelo and Monde Ntwasa
Appl. Biosci. 2026, 5(1), 13; https://doi.org/10.3390/applbiosci5010013 - 14 Feb 2026
Viewed by 729
Abstract
The present study aims to evaluate the interaction of gliclazide with proteins related to inflammation—{inhibitor of nuclear factor kappa-B kinase subunit beta (IKKα) and NF-kappa-B-inducing kinase (NIK)}; oxidative stress—{kelch domain of Kelch-like ECH-associated protein 1 (KKeap1)} and ER stress—{inositol-requiring enzyme-1alpha (IRE1α)}. X-ray crystal [...] Read more.
The present study aims to evaluate the interaction of gliclazide with proteins related to inflammation—{inhibitor of nuclear factor kappa-B kinase subunit beta (IKKα) and NF-kappa-B-inducing kinase (NIK)}; oxidative stress—{kelch domain of Kelch-like ECH-associated protein 1 (KKeap1)} and ER stress—{inositol-requiring enzyme-1alpha (IRE1α)}. X-ray crystal structure of IKKα, (PDB ID: 5EBZ), KKeap1 (PDB ID: 4L7B), NIK (PDB ID: 8YHW) and IRE1α (PDB ID: 4YZ9) were obtained from Protein Data Bank and Open Babel 3.1.1 was used to prepare the ligands. Prior to docking, protein structures were prepared by removing water molecules, adding hydrogen atoms, and optimizing side chain conformations using Maestro (Schrödinger Suite, version 2024-2) along with the OPLS4 force field. Ligand docking was performed using the Glide application. Molecular dynamics simulation was performed with Desmond (Schrödinger Suite) within the Maestro interface for 100 ns for the NPT ensemble at 300 K and 1 atm pressure. Physicochemical and pharmacokinetics properties were analyzed using ADMETlab 3.0 and SwissADME. The binding energies of gliclazide with IKKα, NIK, KKeap1 and IRE1α were −8.3, −7.9, −8.4 and −8.8, respectively. Root mean square displacement (RMSD), root mean square fluctuation (RMSF) and radius of gyration analyses predicted relatively strong and stable interactions between gliclazide and the proteins, with favourable pharmacokinetic properties. It was also observed that CYP3A4 metabolizes gliclazide, in addition to CYP2C9 and CYP2C19. The activity of gliclazide against inflammation, oxidative stress and endoplasmic reticulum stress might be via interaction with these proteins. Full article
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