Search Results (784)

Botrytis cinerea is a highly versatile pathogenic fungus, causing significant damage across a wide range of plant species. A central focus of this review is the recent advances made through proteomics, an advanced molecular tool, in understanding the mechanisms of B. cinerea infection. Recent advances in mass spectrometry-based proteomics—including LC-MS/MS, iTRAQ, MALDI-TOF, and surface shaving—have enabled the in-depth characterization of B. cinerea subproteomes such as the secretome, surfactome, phosphoproteome, and extracellular vesicles, revealing condition-specific pathogenic mechanisms. Notably, in under a decade, the proportion of predicted proteins experimentally identified has increased from 10% to 52%, reflecting the rapid progress in proteomic capabilities. We explore how proteomic studies have significantly enhanced our knowledge of the fungus secretome and the role of extracellular vesicles (EVs), which play key roles in pathogenesis, by identifying secreted proteins—such as pH-responsive elements—that may serve as biomarkers and therapeutic targets. These technologies have also uncovered fine regulatory mechanisms across multiple levels of the fungal proteome, including post-translational modifications (PTMs), the phosphomembranome, and the surfactome, providing a more integrated view of its infection strategy. Moreover, proteomic approaches have contributed to a better understanding of host–pathogen interactions, including aspects of the plant’s defensive responses. Furthermore, this review discusses how proteomic data have helped to identify metabolic pathways affected by novel, more environmentally friendly antifungal compounds. A further update on the advances achieved in the field of proteomics discovery for the organism under consideration is provided in this paper, along with a perspective on emerging tools and future developments expected to accelerate research and improve targeted intervention strategies. Full article

To investigate the effect of Botrytis cinerea infection severity on the flavor characteristics of Petit Manseng noble rot wine, this study analyzed wines produced from Petit Manseng grapes grown in the eastern foothills of Helan Mountain, Ningxia, China. The grapes were categorized into three groups based on infection status: uninfected, mildly infected, and severely infected with Botrytis cinerea. Headspace solid-phase microextraction coupled with gas chromatography-mass spectrometry (HS-SPME-GC-MS) and an electronic nose were employed to detect and analyze the aroma components of wines under the three infection conditions. Additionally, trained sensory panelists conducted sensory evaluations of the wine aromas. The results revealed that wines made from severely infected grapes exhibited the richest and most complex aroma profiles. A total of 70 volatile compounds were identified, comprising 32 esters, 17 alcohols, 5 acids, 8 aldehydes and ketones, 4 terpenes, and 4 other compounds. Among these, esters and alcohols accounted for the highest contents. Key aroma-active compounds included isoamyl acetate, ethyl decanoate, phenethyl acetate, ethyl laurate, hexanoic acid, linalool, decanoic acid, citronellol, ethyl hexanoate, and methyl octanoate. Sensory evaluation indicated that the “floral aroma”, “pineapple/banana aroma”, “honey aroma”, and “overall aroma intensity” were most pronounced in the severely infected group. These findings provide theoretical support for the harvesting of severely Botrytis cinerea-infected Petit Manseng grapes and the production of high-quality noble rot wine in this region. Full article

Fungi, from saprophytes to pathogens, face predictable daily fluctuations in light, temperature, humidity, and nutrient availability. To cope, they have evolved an internal circadian clock that confers a major adaptive advantage. This review critically synthesizes current knowledge on the molecular architecture and physiological relevance of fungal circadian systems, moving beyond the canonical Neurospora crassa model to explore the broader phylogenetic diversity of timekeeping mechanisms. We examine the core transcription-translation feedback loop (TTFL) centered on the FREQUENCY/WHITE COLLAR (FRQ/WCC) system and contrast it with divergent and non-canonical oscillators, including the metabolic rhythms of yeasts and the universally conserved peroxiredoxin (PRX) oxidation cycles. A central theme is the clock’s role in gating cellular defenses against oxidative, osmotic, and nutritional stress, enabling fungi to anticipate and withstand environmental insults through proactive regulation. We provide a detailed analysis of chrono-pathogenesis, where the circadian control of virulence factors aligns fungal attacks with windows of host vulnerability, with a focus on experimental evidence from pathogens like Botrytis cinerea, Fusarium oxysporum, and Magnaporthe oryzae. The review explores the downstream pathways—including transcriptional cascades, post-translational modifications, and epigenetic regulation—that translate temporal signals into physiological outputs such as developmental rhythms in conidiation and hyphal branching. Finally, we highlight critical knowledge gaps, particularly in understudied phyla like Basidiomycota, and discuss future research directions. This includes the exploration of novel clock architectures and the emerging, though speculative, hypothesis of “chrono-therapeutics”—interventions designed to disrupt fungal clocks—as a forward-looking concept for managing fungal infections. Full article

Postharvest storage of kiwifruit requires the implementation of precise environmental conditions to maintain fruit quality and reduce decay. In this research, conducted over two years, we examined whether the storage conditions, characterized by low temperature (1 ± 1 °C) and ultra-high relative humidity (higher than 99%, close to saturation), generated by the Xedavap^® machine from Xeda International, were effective in maintaining the fruit quality and reducing postharvest rots compared to standard storage conditions, characterized by involved low temperature (1 ± 1 °C) and high relative humidity (98%). Kiwifruits preserved under the experimental conditions exhibited a significantly lower rot incidence after 60 days of storage, with the treated fruits showing 4.48% rot compared to 23.03% under the standard conditions in the first year, using inoculated fruits, and 6.30% versus 9.20% in the second year using naturally infected fruits, respectively. After shelf life (second year only), rot incidence remained significantly lower in the treated fruits (12.80%) compared to the control (42.30%). Additionally, quality analyses showed better parameters when using the Xedavap^® system over standard methods. The ripening process was effectively slowed down, as indicated by changes in the total soluble solids, firmness, and titratable acidity compared to the control. These results highlight the potential of ultra-high relative humidity conditions to reduce postharvest rot, extend the shelf life, and enhance the marketability of kiwifruit, presenting a promising and innovative solution for the horticultural industry. Full article

Indane and phenylpropyl derivatives are interesting precursors for the synthesis of bioactive compounds, including those with antifungal or anti-inflammatory properties. In light of the increasing interest in the biocatalytic potential of marine-derived fungi, a study was conducted in which the substrates indene (1), indanone (2), 5-chloroindanone (2a), 1-phenylpropyl acetate (3), and 1-(4′-chlorophenyl)propyl acetate (3a) were biotransformed by the marine sediment-derived fungal strains Purpureocillium lilacinum BC17-2 and Emericellopsis maritima BC17. Fermentations led to the isolation of sixteen derivatives, which exhibited noteworthy stereoselectivities. The absolute configurations of the optically active indane and phenylpropyl derivatives isolated were determined through electronic circular dichroism and optical rotation dispersion computational calculations. Furthermore, given the known biocatalytic potential of the phytopathogenic fungus Botrytis cinerea to modify the structures of certain antifungal phenylpropyl derivatives, substrates 3 and 3a were also subjected to biotransformation by the strain B. cinerea UCA992. The antifungal activities of the biotransformation products (R)-5, (S)-6, syn-(1S,2R)-7, anti-(1R,2R)-7, (R)-8, (R)-9, threo-(1R,2R)-11, and erythro-(1R,2S)-11 were evaluated against B. cinerea UCA992 using a resazurin-based microdilution method. Full article

Postharvest fungal diseases are a major cause of fruit spoilage and economic losses, particularly in perishable commodities like strawberries. In this study, a plant-derived Weissella paramesenteroides strain R2 was isolated from the mango fruit surface and evaluated for its antifungal potential. Dual-culture assays revealed the strong inhibitory activity of strain R2 against key postharvest pathogens, including Botrytis cinerea, Colletotrichum gloeosporioides, and Fusarium oxysporum. Notably, cell-free fermentation broth exhibited no antifungal activity, whereas the volatile organic compounds (VOCs) produced by R2 significantly suppressed fungal growth in sealed plate assays. GC-MS analysis identified 84 VOCs, with pyrazines as the dominant group. Three major compounds, 2,5-dimethylpyrazine, 2,4-di-tert-butylphenol, and 2-furanmethanol, were validated for their antifungal activity. The application of R2 VOCs in strawberry preservation significantly reduced disease incidence and severity during storage. These findings highlight W. paramesenteroides R2 as a promising, food-safe biocontrol agent for postharvest disease management via VOC-mediated mechanisms. Full article

Horticulture and agriculture are facing the challenge of growing healthy and high-quality crops. Plant extracts are currently being widely investigated as an alternative means of plant protection. Interest in these measures has increased in order to reduce the use of chemical pesticides, environmental pollution, and adverse effects on human health. Also, due to the goals of the European Green Deal and the decreasing use of chemical pesticides, it has become essential to look for safer alternatives. The aim of this study was to investigate the inhibitory effect of plant extracts of clove (Syzygium aromaticum L.) and rosemary (Rosmarinus officinalis L.) against Colletotrichum acutatum and Botrytis cinerea plant pathogens and to evaluate fungal pathogens recovery after the exposure to the extract. The plant extracts (PEs) were obtained by subcritical CO₂ extraction. The inhibitory effect of PEs was investigated in vitro at concentrations of 1200, 1600, 2000, 2400, 2800, and 3000 μL/L. Petri dishes were incubated at 25 ± 2 °C, and the mycelial growth of fungal pathogens was evaluated at 2, 4, and 7 days after inoculation (DAI). Reinoculation was then performed. The research showed that both plant extracts had an antifungal effect. However, clove PE was more effective. This allows us to say that plant-based measures can inhibit plant pathogens, but it is essential to determine the optimal concentrations and test them with different pathogens. Full article

The conventional agricultural industry largely relies on pesticides to maintain healthy and viable crops. Application of fungicides, both pre- and post-harvest of crops, is the go-to method for avoiding and eliminating Botrytis cinerea, the fungal pathogen responsible for gray mold. However, conventional fungicides and their residues have purported negative environmental and health impacts. Natural products, such as essential oils, are viewed as a promising alternative to conventional fungicides. The current research is an in vitro study on the antifungal activity of a natural water-based fungicide (N.F.), which uses a blend of essential oils (ajowan, cassia, clove, eucalyptus, lemongrass, oregano) as the active ingredients against B. cinerea. Compared to conventional fungicides tested at the same concentration (50 μL/mL), those with active ingredients of myclobutanil or propiconazole; the N.F. demonstrated significant (F(3,16) = 54, p = <0.001) and complete fungal growth inhibition. While previous research has largely focused on the antifungal properties of single essential oils and/or isolated compounds from essential oils, this research focuses on the efficacy of using a blend of essential oils in a proprietary delivery system. This research is of importance to the fields of agronomy, ecology, and health sciences. Full article

Soilborne diseases cause losses of 45–70% in faba bean in Ethiopia. Studies were undertaken to define soilborne pathogens and their complexes in Ethiopia. First, the severity of root rot was assessed in 150 field sites across seven Ethiopian regions. Soil samples were collected, and the DNA of 29 pests and pathogens was quantified using a commercial quantitative PCR (qPCR) soil testing service. There was a very high incidence rate of Macrophomina phaseolina, as well as Pythium clades F and I. The other detected species in order of incidence included Fusarium redolens, Rhizoctonia solani, Aphanomyces euteiches, Phytophthora megasperma, Sclerotinia sclerotiorum and S. minor, and Verticillium dahliae, as well as low levels of Thielaviopsis basicola. Five anastomosis groups (AG) of R. solani, namely AG2.1, AG2.2, AG3, AG4, and AG5, were detected, of which AG2.2 and AG4 were most prevalent. We believe this is the first report of occurrence for Ethiopia of A. euteiches, Ph. megasperma, T. basicola, and the five AGs for R. solani. There were very high incidence rates of the foliar pathogens Botrytis cinerea, B. fabae, Didymella pinodes, and Phoma pinodella and of the nematode Pratylenchus thornei, followed by P. neglectus and P. penetrans. The root rot severity and distribution varied significantly across regions, as well as with soil types, soil pH, and soil drainage. Subsequently, metabarcoding of the soil DNA was undertaken using three primer pairs targeting fungi (ITS2), Fusarium species (TEF1 α), and Oomycetes (ITS1Oo). The ITS2 and TEF1α primers emphasized F. oxysporum as the most abundant soilborne fungal pathogen and highlighted F. ananatum, F. brachygibbosum, F. brevicaudatum, F. clavum, F. flagelliforme, F. keratoplasticum, F. napiforme, F. nelsonii, F. neocosmosporiellum, F. torulosum, and F. vanettenii as first reports of occurrence for Ethiopia. The ITS1Oo primer confirmed Pythium spp. as the most prevalent of all Oomycetes. Full article

Accurate and early detection of plant diseases is essential for effective management and the advancement of sustainable smart agriculture. However, building large annotated datasets for disease classification is often costly and time-consuming, requiring expert input. To address this challenge, this study explores the integration of few-shot learning with hyperspectral imaging to detect four major fungal diseases in tomato plants: Alternaria alternata, Alternaria solani, Botrytis cinerea, and Fusarium oxysporum. Following inoculation, hyperspectral images were captured every other day from Day 1 to Day 7 post inoculation. The proposed hybrid method includes three main steps: (1) preprocessing of hyperspectral image cubes, (2) deep feature extraction using the EfficientNet model, and (3) classification using Manhattan distance within a few-shot learning framework. This combination leverages the strengths of both spectral imaging and deep learning for robust detection with minimal data. The few-shot learning approach achieved high detection accuracies of 85.73%, 80.05%, 90.33%, and 82.09% for A. alternata, A. solani, B. cinerea, and F. oxysporum, respectively, based on data collected on Day 7 post inoculation using only three training images per class. Accuracy improved over time, reflecting the progressive nature of symptom development and the model’s adaptability with limited data. Notably, A. alternata and B. cinerea were reliably detected by Day 3, while A. solani and F. oxysporum reached dependable detection levels by Day 5. Routine visual assessments showed that A. alternata and B. cinerea developed visible symptoms by Day 5, whereas A. solani and F. oxysporum remained asymptomatic until Day 7. The model’s ability to detect infections up to two days before visual symptoms emerged highlights its value for pre-symptomatic diagnosis. These findings support the use of few-shot learning and hyperspectral imaging for early, accurate disease detection, offering a practical solution for precision agriculture and timely intervention. Full article

Gray mold disease, caused by the fungus Botrytis cinerea, affects a wide variety of plants. In this study, we conducted several in vitro tests and genomic analyses on three strains of this fungus (BcPgIs-1, BcPgIs-3, MIC) previously isolated from diseased pomegranate fruits, collected at two geographic locations in Mexico. Our goal was to identify possible differences among these strains. The development of the three strains in distinct culture media, the production of extracellular enzymes, and their effect on the progression of infection in pomegranate fruits were evaluated. The genomes were sequenced using the Illumina platform and analyzed with various bioinformatics tools. All strains possess genetic determinants for virulence and cell wall polymer degradation, but MIC exhibited the highest pectinolytic activity in vitro. This strain also produced sclerotia in a shorter time (7 days) in PDA medium. BcPgls-3 demonstrated the highest conidia production across all the culture media used. Both BcPgls-3 and MIC damaged all the pomegranate fruits 8 days after inoculation, while the BcPgls-1 required up to 9 days. Sequencing of the three strains yielded high-quality sequences, resulting in a total of 17 scaffolds and genomes that exceed 41 million bp, with a GC content of approximately 42%. Phylogenomic analysis indicated that the MIC strain is situated in a group separate from BcPgIs-1 and BcPgIs-3. BcPgIs-3 possesses more coding sequences, but MIC has more genes for CAZymes and peptidases. The three strains share 10,174 genes, while BcPgIs-3 and MIC share 851. These findings highlight the differences among the strains studied, which may reflect their adaptive capacities to their environment. Results contribute to our understanding of the biology of gray mold in pomegranates and could assist in developing more effective control strategies. Full article

Nine chaetoglobosins (1–9) including five previously undescribed ones (1–5) were obtained from the culture broth of an endophytic fungus (Chaetomium sp. UJN-EF006) isolated from the leaves of Vaccinium bracteatum. The structures of these fungal metabolites were elucidated by spectroscopic methods including mass spectroscopy, nuclear magnetic resonance, single crystal X-ray crystallography, and electronic circular dichroism. To accelerate the development of novel fungicides, all of the isolated chaetoglobosins were evaluated for their antifungal activity against two crop pathogens, Botrytis cinerea and Sclerotinia sclerotiorum. The assay results revealed that chaetoglobosins 2, 6, 7, and 9 possessed a significant fungicidal effect against B. cinerea, with EC₅₀ values all below 10 μg/mL. Particularly, the most potent compound, 7, was 175- and 96-fold as active as the commercially available fungicides carbendazim (EC₅₀ 70.11 μg/mL) and azoxystrobin (EC₅₀ 39.02 μg/mL), respectively. A further observation under scanning electron microscope indicated that compound 2 could markedly impair the fungal hyphae of B. cinerea. The study demonstrates that the chaetoglobosins had excellent in vitro antifungal activities against B. cinerea. Full article

Beneficial microorganisms are emerging as promising alternatives to conventional pesticides for the biological control of plant diseases. This study evaluated the efficacy of a consortium composed of Pseudomonas yamanorum and Trichoderma longibrachiatum and compost against three grapevine pathogens, Botrytis cinerea, Erysiphe necator, and Plasmopara viticola, in three cultivars: Victoria, Superior Seedless, and Early Sweet. The microbial consortium (P. yamanorum + T. longibrachiatum) combined with compost (treatment T4) significantly outperformed the individual treatments, reducing disease severity indices (DSIs) to 7.72, 5.35, and 3.37% in Victoria; 5.70, 6.95, and 3.32% in Superior Seedless; and 4.98, 2.35, and 2.84% in Early Sweet. The treatment also enhanced physiological traits, such as the chlorophyll content, and defense responses, including ascorbate peroxidase (APX), peroxidase (POX), and catalase (CAT) enzyme activities. Biochemical markers, including the total protein content, phenolic content, and reduced malondialdehyde (MDA) levels, indicated an improved oxidative stress tolerance. The soil analysis confirmed an increased pH, organic matter, nitrogen content, and microbial biomass. T4 further reduced the fruit disease incidence and improved quality attributes, including the sugar content and size, while lowering nitrate accumulation. These findings highlight the synergistic benefits of combining a microbial consortium with compost as a sustainable strategy to promote grapevine health, productivity, and soil resilience. Full article

RNA interference (RNAi) has emerged as a promising tool for controlling fungal plant pathogens, offering a targeted and environmentally friendly alternative to traditional chemical fungicides. Botrytis cinerea, the causative agent of gray mold disease, serves as a model and plant pathogen for investigating RNAi-based strategies due to its wide host range and economic impact. This review synthesizes current knowledge on RNAi mechanisms in B. cinerea, and that several factors influence the efficacy of RNAi in B. cinerea, including the stability and uptake of double-stranded RNAs (dsRNAs), the efficiency of RNA processing machinery, and environmental conditions. Furthermore, RNAi responses can vary significantly across strains, developmental stages, and infection modes, underscoring the complexity of fungal responses. With this review, I also aim to present the field trials reported so far, underscoring the practicality of RNAi. This review identifies current hotspots and outlines future directions for deploying RNAi as a sustainable control strategy against fungal pathogens. Full article

The apple tree (Malus domestica), a member of the Rosaceae family, holds significant economic value but faces postharvest challenges, like blue mold caused by Penicillium expansum and gray mold caused by Botrytis cinerea. While synthetic fungicides are widely used, their limitations highlight the need for sustainable alternatives. This study explores the antifungal properties of extracts from Celtis australis, Olea europea var. sylvestris, Chamaerops humilis, and Asparagus albus against these pathogens. In vitro tests assessed mycelial growth inhibition, whereas in vivo trials consisted of measurement of weight loss, firmness, total soluble solids, titratable acidity, and maturity index. Moreover, the phytochemical traits of the extracts were determined using the Folin–Ciocalteu method and HPLC. The results revealed notable antifungal activity, particularly for Celtis australis extract at a concentration of 300 g L⁻¹, which led to significant mycelial growth inhibition (61% for P. expansum and 41% for B. cinerea), a reduction in diseases’ severity (39% and 50%), and a notable decrease in diseases’ incidence (43% and 48%), respectively. Phytochemical analysis reflected the presence of phenols and flavonoids in the tested extracts. Importantly, the natural treatments helped preserve the apples’ quality during storage. Molecular docking studies further revealed that major compounds in Celtis australis extract inhibit the 14α-demethylase enzyme, a key target in fungal sterols biosynthesis. Full article