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Keywords = Antirrhinum

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23 pages, 21973 KiB  
Article
Transcriptome Analysis Reveals Association of E-Class AmMADS-Box Genes with Petal Malformation in Antirrhinum majus L.
by Dongmei Yang, Yiwen Chen, Yutong He, Jiayi Song, Ye Jiang, Meiyun Yang, Xingyan Zheng, Li Wang and Huizhen Hu
Int. J. Mol. Sci. 2025, 26(9), 4450; https://doi.org/10.3390/ijms26094450 - 7 May 2025
Viewed by 574
Abstract
Snapdragon (Antirrhinum majus) serves as a model system for dissecting floral morphogenesis mechanisms. Petal malformation in A. majus impacts ornamental value, but its genetic basis remains poorly understood. We compared transcriptomes of the wild-type (Am11) and a petal-malformed mutant (AmDP2) to [...] Read more.
Snapdragon (Antirrhinum majus) serves as a model system for dissecting floral morphogenesis mechanisms. Petal malformation in A. majus impacts ornamental value, but its genetic basis remains poorly understood. We compared transcriptomes of the wild-type (Am11) and a petal-malformed mutant (AmDP2) to identify 2303 differentially expressed genes (DEGs), including E-class MIKC-type MADS-box genes SEP3 (AmMADS25/61/20/26) and SEP2 (AmMADS85). Weighted gene co-expression network (WGCNA), protein-protein interaction (PPI), qRT-PCR and virus-induced gene silencing (VIGS) analyses revealed interactions between SEP2/SEP3 and C/A/B-class MADS-box genes (AG, AP1, AP3), co-regulated MADS transcription factors (MTFs) AGL15 (AmMADS16), and auxin signaling genes (SAUR1, IAA13). qRT-PCR validated upregulation of SEP3 and downregulation of SEP2 in AmDP2. Our results suggest that E-class MADS-box genes are associated with petal malformation through coordinated interactions with hormonal pathways. These findings provide candidate targets for further functional studies in snapdragon. Full article
(This article belongs to the Section Molecular Plant Sciences)
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9 pages, 1451 KiB  
Article
Heterologous Expression of MYB Gene (Rosea1) or bHLH Gene (Delila) from Antirrhinum Increases the Phenolics Pools in Salvia miltiorrhiza
by Qian Tian, Wei Han, Donghao Wang and Zhezhi Wang
Int. J. Mol. Sci. 2024, 25(22), 11917; https://doi.org/10.3390/ijms252211917 - 6 Nov 2024
Viewed by 949
Abstract
Phenolic acids have health-promoting properties, however, but their low concentrations in Salvia miltiorrhiza limit broader medicinal applications. MYB and bHLH transcription factors activate multiple target genes involved in phenylpropanoid metabolism, thereby enhancing the production of various secondary metabolites. We introduced the MYB transcription [...] Read more.
Phenolic acids have health-promoting properties, however, but their low concentrations in Salvia miltiorrhiza limit broader medicinal applications. MYB and bHLH transcription factors activate multiple target genes involved in phenylpropanoid metabolism, thereby enhancing the production of various secondary metabolites. We introduced the MYB transcription factor Antirrhinum Rosea1 (AmROS1) or Delila (AmDEL) into S. miltiorrhiza and observed that antioxidant activity in transgenic plants increased by 1.40 to 1.80-fold. The total content was significantly higher in transformants compared to the controls. Furthermore, heterologous expression of AmROS1 or AmDEL triggered moderate accumulations of rosmarinic acid and salvianolic acid at various growth stages. Levels of total phenolics, total flavonoids, and anthocyanins were significantly elevated. These biological and phytochemical alterations were correlated with the upregulated expression of genes involved in phenolic acid biosynthesis. Our findings demonstrate that AmROS1 and AmDEL function as a transcriptional activator in phenolic acids biosynthesis. This study offers further insights into the heterologous or homologous regulation of phenolics production, potentially enabling its engineering in S. miltiorrhiza. Full article
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15 pages, 1452 KiB  
Article
Wood-Based Biochar Ratio Used for Partial Peat Replacement in Growing Media for Antirrhinum majus Pot Production
by Antonios Chrysargyris, Munoo Prasad and Nikolaos Tzortzakis
Agriculture 2024, 14(11), 1860; https://doi.org/10.3390/agriculture14111860 - 22 Oct 2024
Cited by 5 | Viewed by 959
Abstract
Biochar has been promoted mostly as a soil supplement that improves plant growth/yield and to a lesser extent as a growing medium component. The alarmed situation for peat substitution in growing medium renders biochar as a promising substitute for current research. In this [...] Read more.
Biochar has been promoted mostly as a soil supplement that improves plant growth/yield and to a lesser extent as a growing medium component. The alarmed situation for peat substitution in growing medium renders biochar as a promising substitute for current research. In this study, biochar derived by wood-based materials was evaluated at different ratios (0, 5, 10, 15, and 20% v/v) for peat partial substitution for Antirrhinum majus pot production. Biochar had increased potassium content and pH, which affected the growing media properties (total pores space and water filled capacity) and decreased nitrogen and phosphorus content in the media. Adding ≥15% biochar increased plant height and decreased flowering, but no effect was observed on plant biomass produced. The presence of biochar increased the total phenols and flavanols content and antioxidant capacity, with greater effects at the higher biochar rates used. This resulted in lipid peroxidation and an increase in hydrogen peroxide content, causing oxidative stress. Potassium and magnesium accumulated more but nitrogen and phosphorus were accumulated less in snapdragon leaves. Biochar at 10% can be considered as a successful candidate to partially substitute peat, and efforts to improve growing media characteristics are required for A. majus pot production. Full article
(This article belongs to the Section Agricultural Soils)
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16 pages, 6758 KiB  
Article
Revealing the Complex Interplay of Biostimulant Applications
by Ye Yuan and Nicholas Dickinson
Plants 2024, 13(16), 2188; https://doi.org/10.3390/plants13162188 - 8 Aug 2024
Cited by 1 | Viewed by 1821
Abstract
Some biostimulant products provide proven benefits to plant production, potentially offering more environmentally friendly, sustainable, and natural inputs into production systems. However, the transference and predictability of known benefits between different growth environments, application protocols, and management systems are fraught with difficulty. In [...] Read more.
Some biostimulant products provide proven benefits to plant production, potentially offering more environmentally friendly, sustainable, and natural inputs into production systems. However, the transference and predictability of known benefits between different growth environments, application protocols, and management systems are fraught with difficulty. In this study, we carried out carefully controlled glasshouse and in vitro assays with applications of humic acids, protein hydrolysates, and seaweed extract to compare the variability of biostimulant effects and dosage-dependent variations across diverse conditions, encompassing a sufficient range to comprehensively assess their full spectrum of impacts. The results demonstrated a clear trend of dosage-dependent effects with each biostimulant exhibiting a significant growth-promoting effect within a critical concentration range, but detrimental effects when the concentration fell outside this range. While substantial growth-promoting effects were observed under glasshouse conditions, biostimulant applications tended to be more sensitive and generally led to negative impacts in sterilised conditions. The combined use of biostimulants mostly resulted in detrimental and toxicological responses with only two combined treatments showing marginal synergistic effects. The findings demonstrated a complex interplay between biostimulants and the growth conditions of plants. Lack of knowledge of the indirect effects of different growth media may result in negative impacts of biostimulant applications and combinations of products outside narrow critical concentration ranges. Full article
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13 pages, 9691 KiB  
Article
Investigating the Effect of Hydrafiber and Biochar as a Substitute for Peat-Based Substrate for Zinnia (Zinnia elegans) and Snapdragon (Antirrhinum majus) Production
by Lilin Chen, Julia Rycyna and Ping Yu
Horticulturae 2024, 10(6), 589; https://doi.org/10.3390/horticulturae10060589 - 4 Jun 2024
Cited by 2 | Viewed by 1831
Abstract
Increasing environmental and economic concerns necessitate the research for peat moss alternatives, aiming to balance ecological sustainability with cost-effectiveness. This study assessed whether biochar (BC) and hydrafiber (HF) could be a partial replacement for peat moss as substrate components. Twelve substrates were formulated [...] Read more.
Increasing environmental and economic concerns necessitate the research for peat moss alternatives, aiming to balance ecological sustainability with cost-effectiveness. This study assessed whether biochar (BC) and hydrafiber (HF) could be a partial replacement for peat moss as substrate components. Twelve substrates were formulated by either mixing BC (20%, 40%, and 60%, by vol.) with HF (20%, 40%, and 60%, by vol.), with the remaining being peat moss or mixing BC (0%, 20%, 40%, and 60%, by vol.) with the commercial substrates (CS) to grow zinnia (Zinnia elegans) and snapdragon (Antirrhinum majus) plants in containers. The physical properties of the substrates, including container capacity, total porosity, air space, bulk density, and chemical properties including leachate pH and electrical conductivity (EC) were measured. Plant growth parameters including growth index (GI) and leaf greenness (indicated with SPAD), biomass, and number of flowers were measured biweekly. The results showed all the substrate mixes had similar air space, bulk density, and SPAD. Treatment with 20% BC and 80% CS yielded the highest GI, biomass, and numbers of flowers in both zinnia and snapdragon. In conclusion, BC could be used to partially (20%) replace commercial substrate mix for container-grown zinnia and snapdragon. Full article
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24 pages, 525 KiB  
Article
Exploring the Volatile Composition and Antibacterial Activity of Edible Flower Hydrosols with Insights into Their Spontaneous Emissions and Essential Oil Chemistry
by Basma Najar, Ylenia Pieracci, Filippo Fratini, Laura Pistelli, Barbara Turchi, Dario Varriale, Luisa Pistelli, Maria Francesca Bozzini and Ilaria Marchioni
Plants 2024, 13(8), 1145; https://doi.org/10.3390/plants13081145 - 19 Apr 2024
Cited by 3 | Viewed by 2240
Abstract
In the circular economy framework, hydrosols, by-products of the essential oil industry, are gaining attention for their potential in waste reduction and resource reuse. This study analyzed hydrosols from six edible flowers, investigating their chemical composition (VOC-Hyd) and antibacterial properties alongside volatile organic [...] Read more.
In the circular economy framework, hydrosols, by-products of the essential oil industry, are gaining attention for their potential in waste reduction and resource reuse. This study analyzed hydrosols from six edible flowers, investigating their chemical composition (VOC-Hyd) and antibacterial properties alongside volatile organic compounds of fresh flowers (VOC-Fs) and essential oils (EOs). Antirrhinum majus exhibited ketones as major VOC-Fs (62.6%) and VOC-Hyd (41.4%), while apocarotenoids dominated its EOs (68.0%). Begonia cucullata showed alkanes (33.7%) and aldehydes (25.7%) as primary VOC-Fs, while alkanes were prevalent in both extracts (65.6% and 91.7% in VOC-Hyd and in EOs, respectively). Calandula officinalis had monoterpenoids in VOC-Fs and VOC-Hyd (89.3% and 49.7%, respectively), while its EOs were rich in sesquiterpenoids (59.7%). Dahlia hortensis displayed monoterpenoid richness in both VOC-Fs and extracts. Monocots species’ VOC-Fs (Polianthes tuberosa, Tulbaghia cominsii) were esters-rich, replaced by monoterpenoids in VOC-Hyd. P. tuberosa EO maintained ester richness, while T. cominsii EOs contained a significant percentage of sulfur compounds (38.1%). Antibacterial assays indicated comparable minimum inhibitory concentration profiles across VOC-Hyd: B. calcullata and P. tuberosa against Staphylococcus aureus and Salmonella enterica ser. typhimurium, T. cominsii against Escherichia coli and S. enterica, A. majus and C. officinalis against S. aureus, and D. hortensis against S. enterica. Full article
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19 pages, 31769 KiB  
Article
Genome-Wide Identification of MYB Transcription Factors and Their Function on Floral Volatile Compounds Biosynthesis in Antirrhinum majus L.
by Xiaohui Song, Senbao Shi, Yulai Kong, Fengyi Wang, Shaorong Dong, Chong Ma, Longqing Chen and Zhenglin Qiao
Horticulturae 2024, 10(2), 136; https://doi.org/10.3390/horticulturae10020136 - 30 Jan 2024
Cited by 1 | Viewed by 2080
Abstract
The v-MYB avivan myoblastsis virus oncogene homolog (MYB) family is the largest gene family of the transcription factor in plants, involved in plant growth and development, secondary metabolism and resistance to biotic/abiotic stress. Antirrhinum majus (snapdragon) is an ideal material for studying ornamental [...] Read more.
The v-MYB avivan myoblastsis virus oncogene homolog (MYB) family is the largest gene family of the transcription factor in plants, involved in plant growth and development, secondary metabolism and resistance to biotic/abiotic stress. Antirrhinum majus (snapdragon) is an ideal material for studying ornamental traits. Nevertheless, there has been no systematic investigation into the AmMYB family of snapdragons. In this study, we identified a total of 162 members of the AmMYB gene family in snapdragons. Gene structure analysis showed that the AmMYB family within the same subgroup had a similar structure and motifs. Analysis of gene duplication events revealed that the amplification of the AmMYB family was driven by whole-genome duplication (WGD) and dispersed duplication. The analysis of cis-acting elements in the promoter region of AmMYB genes reveals a collaborative involvement of light-responsive growth and development elements, stress resistance elements, and hormone-responsive elements jointly participating in the regulation of the AmMYB gene. Collinearity analysis demonstrates significant functional distinctions between AmMYB and monocotyledonous plants. The classification of AmMYB members results in 3 main subgroups with 36 smaller subgroups. All AmMYB genes are distributed across all eight chromosomes, with no apparent correlation between subfamily distribution and chromosome length. Through phylogenetic analysis and RNA-seq analysis, we have identified 9 R2R3-MYB genes that potentially play a role in the regulation of floral volatile organic compounds (FVOCs) biosynthesis. Their expression patterns were verified by qRT-PCR experiments. This study establishes a robust foundation for further investigations into the functionality of AmMYB genes and their molecular mechanisms underlying FVOC biosynthesis in snapdragons. Full article
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19 pages, 1762 KiB  
Review
TCP Transcription Factors in Plant Reproductive Development: Juggling Multiple Roles
by Ivana L. Viola and Daniel H. Gonzalez
Biomolecules 2023, 13(5), 750; https://doi.org/10.3390/biom13050750 - 26 Apr 2023
Cited by 27 | Viewed by 4468
Abstract
TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR (TCP) transcription factors (TFs) are plant-specific transcriptional regulators exerting multiple functions in plant growth and development. Ever since one of the founding members of the family was described, encoded by the CYCLOIDEA (CYC) gene from Antirrhinum majus [...] Read more.
TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR (TCP) transcription factors (TFs) are plant-specific transcriptional regulators exerting multiple functions in plant growth and development. Ever since one of the founding members of the family was described, encoded by the CYCLOIDEA (CYC) gene from Antirrhinum majus and involved in the regulation of floral symmetry, the role of these TFs in reproductive development was established. Subsequent studies indicated that members of the CYC clade of TCP TFs were important for the evolutionary diversification of flower form in a multitude of species. In addition, more detailed studies of the function of TCPs from other clades revealed roles in different processes related to plant reproductive development, such as the regulation of flowering time, the growth of the inflorescence stem, and the correct growth and development of flower organs. In this review, we summarize the different roles of members of the TCP family during plant reproductive development as well as the molecular networks involved in their action. Full article
(This article belongs to the Special Issue Molecular Plant Reproduction: From Cells to Nature)
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18 pages, 1879 KiB  
Article
Supplemental Lighting Quality Influences Time to Flower and Finished Quality of Three Long-Day Specialty Cut Flowers
by Caleb E. Spall and Roberto G. Lopez
Horticulturae 2023, 9(1), 73; https://doi.org/10.3390/horticulturae9010073 - 6 Jan 2023
Cited by 6 | Viewed by 2513
Abstract
Year-round demand for locally sourced specialty cut flowers continues to increase. However, due to low radiation intensities and temperatures, growers in northern latitudes must utilize greenhouses, but limited production information detailing manipulation of the radiation environment exists. Therefore, our objective is to quantify [...] Read more.
Year-round demand for locally sourced specialty cut flowers continues to increase. However, due to low radiation intensities and temperatures, growers in northern latitudes must utilize greenhouses, but limited production information detailing manipulation of the radiation environment exists. Therefore, our objective is to quantify the influence of supplemental lighting (SL) quality on time to flower and harvest and stem quality of three long-day specialty cut flowers. Godetia ‘Grace Rose Pink’ (Clarkia amoena), snapdragon ‘Potomac Royal’ (Antirrhinum majus), and stock ‘Iron Rose’ (Matthiola incana) plugs are transplanted into bulb crates and placed in one of six greenhouse compartments with SL providing a total photon flux density of 120 µmol·m−2·s−1 from 0700 to 1900 HR. After four weeks, SL is extended to provide a 16 h photoperiod to induce flowering. SL treatments are provided by either high-pressure sodium (HPS) fixtures or various light-emitting diode (LED) fixtures. Treatments are defined by their 100 nm wavebands of blue (B; 400–500 nm), green (G; 500–600 nm), red (R; 600–700 nm), and far-red (FR; 700–800 nm) radiation (photon flux density in μmol·m−2·s−1) as B7G60R44FR9 (HPS120), B20G50R45FR5, B20R85FR15, B30G25R65, B120, or R120. Time to harvest (TTH) is up to 14, 15, and 10 d slower under R120 SL for godetia, snapdragon, and stock, respectively, compared to the quickest treatments (HPS120, B120, and B20R85FR15 SL). However, R120 SL produces cut flowers up to 18% longer than those grown under the quickest treatments. Both broad-spectrum LED fixtures slightly delay TTH compared to the quickest treatments. Stem caliper is not commercially different between treatments for godetia or snapdragon, although stems are up to 14% thinner for stock grown under B120 SL compared to the other treatments. Flower petal color is not commercially different between SL treatments. We recommend utilizing a SL fixture providing a spectrum similar to B20R85FR15 SL or B20G50R45FR5, as they elicit desirable crop responses with minimal developmental, quality, and visibility tradeoffs. While HPS lamps perform similarly to the recommended fixtures, we recommend utilizing LEDs for their higher photon efficacy and potential energy savings. Full article
(This article belongs to the Section Floriculture, Nursery and Landscape, and Turf)
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17 pages, 3897 KiB  
Article
Orchid NAC Transcription Factors: A Focused Analysis of CUPULIFORMIS Genes
by Maria Carmen Valoroso, Francesca Lucibelli and Serena Aceto
Genes 2022, 13(12), 2293; https://doi.org/10.3390/genes13122293 - 5 Dec 2022
Cited by 5 | Viewed by 2782
Abstract
Plant transcription factors are involved in different developmental pathways. NAC transcription factors (No Apical Meristem, Arabidopsis thaliana Activating Factor, Cup-shaped Cotyledon) act in various processes, e.g., plant organ formation, response to stress, and defense mechanisms. In Antirrhinum majus, the NAC transcription factor CUPULIFORMIS [...] Read more.
Plant transcription factors are involved in different developmental pathways. NAC transcription factors (No Apical Meristem, Arabidopsis thaliana Activating Factor, Cup-shaped Cotyledon) act in various processes, e.g., plant organ formation, response to stress, and defense mechanisms. In Antirrhinum majus, the NAC transcription factor CUPULIFORMIS (CUP) plays a role in determining organ boundaries and lip formation, and the CUP homologs of Arabidopsis and Petunia are involved in flower organ formation. Orchidaceae is one of the most species-rich families of angiosperms, known for its extraordinary diversification of flower morphology. We conducted a transcriptome and genome-wide analysis of orchid NACs, focusing on the No Apical Meristem (NAM) subfamily and CUP genes. To check whether the CUP homologs could be involved in the perianth formation of orchids, we performed an expression analysis on the flower organs of the orchid Phalaenopsis aphrodite at different developmental stages. The expression patterns of the CUP genes of P. aphrodite suggest their possible role in flower development and symmetry establishment. In addition, as observed in other species, the orchid CUP1 and CUP2 genes seem to be regulated by the microRNA, miR164. Our results represent a preliminary study of NAC transcription factors in orchids to understand the role of these genes during orchid flower formation. Full article
(This article belongs to the Collection Feature Papers: 'Plant Genetics and Genomics' Section)
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15 pages, 4454 KiB  
Article
Genome-Wide Identification and Expression Analysis of RR-Type MYB-Related Transcription Factors in Tomato (Solanum lycopersicum L.)
by Jiaying Sun and Changkui Guo
Horticulturae 2022, 8(5), 399; https://doi.org/10.3390/horticulturae8050399 - 2 May 2022
Cited by 5 | Viewed by 3287
Abstract
Evidence have indicated that RR-type MYB-related transcription factors (TFs) are functionally diverse in regulating floral development, fruit development, leaf senescence, ABA response, and drought and salt responses. Several RR-type MYB-related TFs in Arabidopsis, Antirrhinum and rice are identified and characterized. However, the [...] Read more.
Evidence have indicated that RR-type MYB-related transcription factors (TFs) are functionally diverse in regulating floral development, fruit development, leaf senescence, ABA response, and drought and salt responses. Several RR-type MYB-related TFs in Arabidopsis, Antirrhinum and rice are identified and characterized. However, the complete RR-type MYB-related family in tomato has not been studied to date. Here, a genome-wide identification of tomato RR-type MYB-related TFs (SlMYBR) was performed by bioinformatics analysis, and their expression patterns were analyzed. A total of thirteen SlMYBR genes, which were mainly distributed in the head or tail of the chromosome, were identified from tomato and were divided into three groups. Group II was all MYBR genes from eudicots without genes from monocots. For Group I and Group III, the phylogenetic tree was in accord with the evolutionary relationship of these species. SlMYBR proteins were unstable proteins and located in the nucleus. The promoters of SlMYBR contained multiple important cis-acting elements related to abiotic stress or hormone responses. SlMYBR genes had various temporal and spatial expression patterns. Experiments of spraying exogenous hormone demonstrated that the expression of most genes containing hormone response elements was changed, indicating that the expression patterns were associated with the amount of cis-acting elements. The comprehensive investigation of tomato SlMYBR genes in the present study helps to clearly understand the evolution of RR-type MYB-related TFs and provides a useful reference for the further functional study of SlMYBR genes in tomato. Full article
(This article belongs to the Special Issue Genomics and Bioinformatics Applications in Horticulture)
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13 pages, 41265 KiB  
Article
Contribution to the Knowledge of Rocky Plant Communities of the Southwest Iberian Peninsula
by Ricardo Quinto Canas, Ana Cano-Ortiz, Giovanni Spampinato, Sara del Río, Mauro Raposo, José Carlos Piñar Fuentes and Carlos Pinto Gomes
Plants 2021, 10(8), 1590; https://doi.org/10.3390/plants10081590 - 2 Aug 2021
Cited by 3 | Viewed by 2988
Abstract
The rocky habitats of southern Portugal are ecosystems with extreme xericity conditions, associated with special abiotic strains. In these unstable ecological conditions, a considerable diversity of plant communities occurs. The objective of this study, carried out in the Algarve and Monchique, and the [...] Read more.
The rocky habitats of southern Portugal are ecosystems with extreme xericity conditions, associated with special abiotic strains. In these unstable ecological conditions, a considerable diversity of plant communities occurs. The objective of this study, carried out in the Algarve and Monchique, and the Mariánica Range biogeographical sectors, is to compare chasmo-chomophytic communities of the southwestern Iberian Peninsula, using a phytosociological approach (Braun–Blanquet methodology) and numerical analysis (hierarchical cluster analysis). From these results, two new communities were identified, Sanguisorbo rupicolae-Dianthetum crassipedis and Antirrhinetum onubensis, as a result of floristic and biogeographical differences from other associations already described within the alliances Rumici indurati-Dianthion lusitani and Calendulo lusitanicae-Antirrhinion linkiani, both included in the Phagnalo saxatilis-Rumicetea indurate class. Full article
(This article belongs to the Special Issue Threatened Vegetation and Environmental Management)
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14 pages, 1475 KiB  
Article
Phenotypic Response to Light Versus Shade Associated with DNA Methylation Changes in Snapdragon Plants (Antirrhinum majus)
by Pierick Mouginot, Nelia Luviano Aparicio, Delphine Gourcilleau, Mathieu Latutrie, Sara Marin, Jean-Louis Hemptinne, Christoph Grunau and Benoit Pujol
Genes 2021, 12(2), 227; https://doi.org/10.3390/genes12020227 - 4 Feb 2021
Cited by 7 | Viewed by 4067
Abstract
The phenotypic plasticity of plants in response to change in their light environment, and in particularly, to shade is a schoolbook example of ecologically relevant phenotypic plasticity with evolutionary adaptive implications. Epigenetic variation is known to potentially underlie plant phenotypic plasticity. Yet, little [...] Read more.
The phenotypic plasticity of plants in response to change in their light environment, and in particularly, to shade is a schoolbook example of ecologically relevant phenotypic plasticity with evolutionary adaptive implications. Epigenetic variation is known to potentially underlie plant phenotypic plasticity. Yet, little is known about its role in ecologically and evolutionary relevant mechanisms shaping the diversity of plant populations in nature. Here we used a reference-free reduced representation bisulfite sequencing method for non-model organisms (epiGBS) to investigate changes in DNA methylation patterns across the genome in snapdragon plants (Antirrhinum majus L.). We exposed plants to sunlight versus artificially induced shade in four highly inbred lines to exclude genetic confounding effects. Our results showed that phenotypic plasticity in response to light versus shade shaped vegetative traits. They also showed that DNA methylation patterns were modified under light versus shade, with a trend towards global effects over the genome but with large effects found on a restricted portion. We also detected the existence of a correlation between phenotypic and epigenetic variation that neither supported nor rejected its potential role in plasticity. While our findings imply epigenetic changes in response to light versus shade environments in snapdragon plants, whether these changes are directly involved in the phenotypic plastic response of plants remains to be investigated. Our approach contributed to this new finding but illustrates the limits in terms of sample size and statistical power of population epigenetic approaches in non-model organisms. Pushing this boundary will be necessary before the relationship between environmentally induced epigenetic changes and phenotypic plasticity is clarified for ecologically relevant mechanisms with evolutionary implications. Full article
(This article belongs to the Special Issue Evolutionary Dynamics of Wild Populations)
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14 pages, 2209 KiB  
Review
Radial or Bilateral? The Molecular Basis of Floral Symmetry
by Francesca Lucibelli, Maria Carmen Valoroso and Serena Aceto
Genes 2020, 11(4), 395; https://doi.org/10.3390/genes11040395 - 6 Apr 2020
Cited by 15 | Viewed by 10722
Abstract
In the plant kingdom, the flower is one of the most relevant evolutionary novelties. Floral symmetry has evolved multiple times from the ancestral condition of radial to bilateral symmetry. During evolution, several transcription factors have been recruited by the different developmental pathways in [...] Read more.
In the plant kingdom, the flower is one of the most relevant evolutionary novelties. Floral symmetry has evolved multiple times from the ancestral condition of radial to bilateral symmetry. During evolution, several transcription factors have been recruited by the different developmental pathways in relation to the increase of plant complexity. The MYB proteins are among the most ancient plant transcription factor families and are implicated in different metabolic and developmental processes. In the model plant Antirrhinum majus, three MYB transcription factors (DIVARICATA, DRIF, and RADIALIS) have a pivotal function in the establishment of floral dorsoventral asymmetry. Here, we present an updated report of the role of the DIV, DRIF, and RAD transcription factors in both eudicots and monocots, pointing out their functional changes during plant evolution. In addition, we discuss the molecular models of the establishment of flower symmetry in different flowering plants. Full article
(This article belongs to the Special Issue Genetic Mechanisms Underpinning Floral Architecture)
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22 pages, 6286 KiB  
Article
A Proposed Methodology to Analyze Plant Growth and Movement from Phenomics Data
by María Victoria Díaz-Galián, Fernando Perez-Sanz, Jose David Sanchez-Pagán, Julia Weiss, Marcos Egea-Cortines and Pedro J. Navarro
Remote Sens. 2019, 11(23), 2839; https://doi.org/10.3390/rs11232839 - 29 Nov 2019
Cited by 4 | Viewed by 8913
Abstract
Image analysis of developmental processes in plants reveals both growth and organ movement. This study proposes a methodology to study growth and movement. It includes the standard acquisition of internal and external reference points and coordinates, coordinates transformation, curve fitting and the corresponding [...] Read more.
Image analysis of developmental processes in plants reveals both growth and organ movement. This study proposes a methodology to study growth and movement. It includes the standard acquisition of internal and external reference points and coordinates, coordinates transformation, curve fitting and the corresponding statistical analysis. Several species with different growth habits were used including Antirrhinum majus, A. linkianum, Petunia x hybrida and Fragaria x ananassa. Complex growth patterns, including gated growth, could be identified using a generalized additive model. Movement, and in some cases, growth, could not be adjusted to curves due to drastic changes in position. The area under the curve was useful in order to identify the initial stage of growth of an organ, and its growth rate. Organs displayed either continuous movements during the day with gated day/night periods of maxima, or sharp changes in position coinciding with day/night shifts. The movement was dependent on light in petunia and independent in F. ananassa. Petunia showed organ movement in both growing and fully-grown organs, while A. majus and F. ananassa showed both leaf and flower movement patterns linked to growth. The results indicate that different mathematical fits may help quantify growth rate, growth duration and gating. While organ movement may complicate image and data analysis, it may be a surrogate method to determine organ growth potential. Full article
(This article belongs to the Special Issue Advanced Imaging for Plant Phenotyping)
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