Search Results (29)

Polycyclic aromatic hydrocarbons (PAHs) are toxic air pollutants mainly released through vehicular emissions and can accumulate on edible plants, posing health risks to humans. This study aimed to isolate and identify endophytic fungi from Allium ampeloprasum and Brassica oleracea var. capitata, which are widely cultivated along roadside areas in the upcountry region of Sri Lanka. Sampling sites included Nuwara Eliya town, Nanu Oya, St. Clair’s, and Meepilimana (control), where above-ground parts of the selected vegetables were collected in six replicates. Fungal isolates were obtained through surface sterilization, and their ability to degrade PAHs (naphthalene, phenanthrene, anthracene, and pyrene) was evaluated using plate assays, spectrophotometric analysis, and high-performance liquid chromatography (HPLC). Phyllosphere PAH concentrations were also measured using HPLC. It revealed significantly higher concentrations of all four PAHs in the phyllosphere of both vegetables at polluted sites, with the highest levels recorded in A. ampeloprasum from Nuwara Eliya town: naphthalene (145.92 ng/g), phenanthrene (97.67 ng/g), anthracene (88.71 ng/g), and pyrene (63.82 ng/g). Most endophytic fungal strains isolated from both vegetables were able to grow on Bacto Bushnell–Haas (BBH) medium supplemented with PAHs, producing colonies exceeding 20 mm in diameter. Spectrophotometric analysis showed that Fusarium liriodendri SP2 (PV400499.1) and Trichoderma atroviride SP1 (PV400486.1) achieved approximately 75% degradation of selected PAHs. Furthermore, HPLC analysis confirmed that these isolates effectively degraded all tested PAHs, with degradation rates of approximately 70%. F. liriodendri was the most efficient degrader, achieving degradation rates of 68.50 ± 2.34% for naphthalene, 65.26 ± 1.21% for phenanthrene, 69.21 ± 1.45% for pyrene, and 66.89 ± 1.98% for anthracene. The PAH degradation byproducts of the selected fungal isolates were non-toxic to Artemia salina, confirming their environmental safety. These results highlight the bioremediation potential of endophytic fungi isolated from A. ampeloprasum and B. oleracea var. capitata in PAH-contaminated environments. Full article

Allium spp. (alliums) are susceptible to rot-diseases caused by pathogenic Fusarium spp., including F. proliferatum (FP) and F. oxysporum (FO), which can cause severe crop losses. A series of pathogenicity tests of four FP isolates from garlic (Allium sativum), four FO isolates from garlic and three FO isolates from onion (Allium cepa var. cepa) were conducted on garlic seedlings and cloves, onion seedlings and bulbs, and shallot (Allium cepa var. aggregatum) bulbs to determine the virulence of the isolates. A combination of PCRs and whole-genome sequencing (WGS), using ONT long-read technology, was used to identify genes encoding putative effectors. The FP isolates caused moderate to severe symptoms in garlic and contained homologues of SIX2, CRX1 and CRX2, and either SIX9 or SIX13. The FOC ex onion isolates caused severe disease symptoms in all allium species tested, while FO from garlic caused moderate to severe disease in garlic but only mild symptoms in onion and shallot. Fusarium oxysporum f. sp. cepae ex onion potentially contained homologues of SIX3, SIX5, SIX7, SIX9, SIX10, SIX12, SIX14, C5, CRX1 and CRX2. The most pathogenic FO isolate to garlic was Fo_VPRI44630 ex garlic, which contained SIX9, SIX13, C5, CRX1 and CRX2. The difference in virulence and putative effector profiles suggests evidence of host-associated differentiation, and as such, the f. sp. or race designation between FO ex garlic and FO ex onion should be investigated further. This is an important finding for future research into best management practices and breeding for disease resistance to FO and FP in garlic. Full article

Soil salinity disrupts rhizosphere interactions, impairing root–microbe symbioses, nutrient uptake, and water relations in onion (Allium cepa L.) and garlic (Allium sativum L.). This study evaluated the efficacy of biofertilizers (Azotobacter chroococcum SARS 10 and Azospirillum lipoferum SP2) and organic amendments (sewage sludge and poultry manure) in salt-affected soils in Kafr El-Sheikh, Egypt. Five treatments were applied: (T1) control (no amendments); (T2) biofertilizer (3 L/ha for onion, 12 L/ha for garlic) + inorganic P (150 kg/ha P₂O₅ for onion, 180 kg/ha for garlic) and K (115 kg/ha K₂SO₄ for onion, 150 kg/ha for garlic); (T3) 50% inorganic N (160 kg/ha for onion, 127.5 kg/ha for garlic) + 50% organic manure (6000 kg/ha for onion, 8438 kg/ha for garlic) + P and K; (T4) biofertilizer + T3; and (T5) conventional inorganic NPK (320 kg/ha N for onion, 255 kg/ha N for garlic + P and K). Soil nutrients (N, P, K), microbial biomass carbon (MBC), dehydrogenase activity, and microbial populations were analyzed using standard protocols. Plant growth (chlorophyll, photosynthetic rate), stress indicators (malondialdehyde, proline), and yield (bulb diameter, fresh yield) were measured. Treatment T4 increased MBC by 30–40%, dehydrogenase activity by 25–35%, available N (39.7 mg/kg for onion, 35.7 mg/kg for garlic), P (17.9 mg/kg for onion), and K (108 mg/kg for garlic). Soil organic matter rose by 8–12%, and cation exchange capacity by 26–36%. Chlorophyll content improved by 25%, malondialdehyde decreased by 20–30%, and fresh yields increased by 20–30% (12.17 tons/ha for garlic). A soybean bioassay confirmed sustained fertility with 20–25% higher dry weight and 30% greater N uptake in T4 plots. These findings highlight biofertilizers and organic amendments as sustainable solutions for Allium productivity in saline rhizospheres. Full article

Although the coking industry is a major polluter, it is still an important and irreplaceable industry in many countries. Wastewater from the coking industry typically contains large amounts of various hazardous substances, including phenols, cyanides, and thiocyanates; we conducted a comprehensive study on their ecotoxicity. This included five different toxicity tests with common species from different trophic levels: the bacteria Aliivibrio fischeri and Pseudomonas putida, the microalgae Chlorella sp., the duckweed Lemna minor, and the onion plant Allium cepa. These tests have rarely or never been used for these three toxicants. The results show that cyanide generally has the highest toxicity, while phenol has a relatively equal or higher toxicity than thiocyanate, depending on the test. Since no data on the joint toxic action of these three toxicants can be found in the literature, and although their joint occurrence in the aquatic environment is very likely, we performed joint toxic action analysis. The analysis was performed for binary and ternary mixtures of the toxicants using the Aliivibrio fischeri test. The concentration addition model was used as a reference model for the toxic behavior of these mixtures. The results obtained showed a synergistic deviation from the concentration addition model for combinations of phenol with cyanide and with thiocyanate, while the combination of cyanide and thiocyanate led to additive toxic behavior. Full article

This is a pioneering study on the main drainage system in Gujranwala District, where untreated mixed wastewater is discharged and subsequently used for vegetable irrigation, leading to potential health and environmental risks. This study seeks to develop the spatial pattern of toxic metal accumulation in soil across an 11 km stretch of land used for vegetable cultivation. By using 90 samples of mixed wastewater and sludge, as well as 10 quadruplicate samples of rhizospheric soils and crops from ten vegetable fields, it was observed that the concentrations of Cr, Cu, Cd, Zn, Fe, Pb, Mg, and Ni in cauliflower (Brassica oleracea var. botrytis L.), coriander (Coriandrum sativum L.), radish (Raphanus sativus L.), mustard (Brassica juncea L.), spinach (Spinacia oleracea L.), meadow clover (Trifolium sp. L.), sorghum (Sorghum bicolour L.), garlic (Allium sativum L.), brinjal (Solanum melongena L.), and mint (Mentha L.) were beyond the permissible limits set by the FAO/WHO, 2001. The declining trend of the toxic metal concentrations in the effluent was Mg > Cr > Ni > Zn > Pb > Cd > Cu > Fe, and in sludge, soil, and plants, it varied in the order of Mg > Fe > Cr > Ni > Zn > Pb > Cd > Cu. Radish, mint, and brinjal had the highest quantities of toxic metals. The spatial pattern of toxic metals was determined by using proximity interpolation, Inverse Distance Weighted (IDW), the fine tuning of the interpolation characteristics, and the kriging of selected sample variograms. Toxic metals were found in the following order: plants > soil > sludge > effluents. The most prevalent cause of metal pollution was soil irrigation with polluted water. This study provides crucial information about the extent of contamination, which could help in the identification of public health risk, the assessment of environmental impacts, and also sustainable water management. Full article

Allium microdictyon Prokh. is a rare, endemic species possessing good taste qualities and listed in the Red Book of Kazakhstan; therefore, it is subject to anthropogenic impact (food gathering, grazing, logging, fires, etc.), which leads to a substantial reduction of its area. The aim of the study was to develop a protocol for microclonal propagation of A. microdictyon. Mature seeds of A. microdictyon collected from natural habitats in the Kazakhstani Altai were used as explants. Optimization of seed sterilization methods, selection of growth regulators for inducing adventitious shoot formation and microclonal propagation, and optimization of conditions for adaptation of regenerants to ex vitro conditions were carried out. Surface sterilization of seeds with 70% EtOH and 0.01% HgCl₂ is optimal for obtaining sterile and viable A. microdictyon seedlings. Sterile seedlings obtained in vitro on ½ Murashige and Skoog medium supplemented with 10 mg L⁻¹ gibberellic acid and 0.1 mg L⁻¹ indole-3-acetic acid (IAA) were used as a source for obtaining micropropagation cultures. Induction of adventitious organogenesis of A. microdictyon was effective on media containing 0.5 mg L⁻¹ 6-benzylaminopurine (BAP) and 1.5–2 mg L⁻¹ zeatin. On these variants, leaf conglomerates consisting of abundantly overgrown thin leaves were formed. The effect of 0.2 mg L⁻¹ indole-3-butyric acid (IBA) on further development of organogenesis and formation of microbulbs in A. microdictyon was shown in comparison with IAA, NAA, and PAC. Regenerated A. microdictyon plants were adapted to ex vitro conditions and resumed growth after 16–20 weeks of relative dormancy. The developed micropropagation protocol can be used to preserve germplasm and propagate for subsequent restoration of A. microdictyon populations in natural habitats. Full article

Here, 12 Fusarium strains, previously described as F. oxysporum f. sp. cepae (Foc), were examined via multi-locus sequencing of calmodulin (cmdA), RNA polymerase II second largest subunit (rpb2), and translation elongation factor 1-alpha (tef1), to verify the taxonomic position of Foc in the newly established epitype of F. oxysporum. The strains in this study were divided into two clades: F. nirenbergiae and Fusarium sp. To further determine the host specifications of the strains, inoculation tests were performed on onion bulbs and Welsh onion seedlings as potential hosts. Four strains (AC145, AP117, Ru-13, and TA) isolated from diseased onions commonly possessed the secreted in xylem (SIX)-3, 5, 7, 9, 10, 12, and 14 genes and were pathogenic and highly aggressive to onion bulbs, whereas all strains except for one strain (AF97) caused significant inhibition of Welsh onion growth. The inoculation test also revealed that the strains harboring the SIX9 gene were highly aggressive to both onion and Welsh onion and the gene was expressed during infection of both onions and Welsh onions, suggesting the important role of the SIX9 gene in pathogenicity. This study provides insights into the evolutionary pathogenicity differentiation of Fusarium strains causing Fusarium basal rot and wilt diseases in Allium species. Full article

Fusarium basal rot (FBR) places a significant limitation on Allium production worldwide. The damage caused by the disease can be observed throughout the entire crop cycle. This research aimed to further our understanding of the impact of FBR on the cultivation of onions (Allium cepa) in northeast Israel. It focused on studying the composition and incidence of Fusarium species involved in disease outbursts in two representative fields, one in Galilee (Hula Valley) and the second in the Golan Heights, where the disease incidences reached 8%. Using colony morphology, microscopic taxonomic keys, and molecular methods, a new, unreported Neocosmospora (previously Fusarium solani) species complex (SC, mostly N. falciformis) was discovered as a wildly spread member of the Fusarium pathobiome community. This species complex appeared more generalist in its nature since it was found in all three onion cultivars’ samples. It was also less virulent in seed germination (42–52% higher sprout biomass, p < 0.05) and bulb pathogenicity tests (41–45% less necrotic) than Fusarium acutatum. Whereas the Galilee yellow Orlando (Riverside) onion cultivar bulbs sampled were colonized by Neocosmospora SC (70%) and two other, less abundant species, F. oxysporum f. sp. cepae and F. acutatum (15% each), the Golan Heights field’s Fusarium community showed host specificity. In the Golan Heights field, F. oxysporum f. sp. cepae inhabited the red Ha2 onion cultivar bulbs, whereas F. acutatum colonized the yellow Ha1 cultivar (40% and 50% prevalence along with Neocosmospora SC). A better understanding of the complexity of this disease caused by different Fusarium species and with a divergence in host susceptibility and virulence is critical for developing disease management strategies. Since each Fusarium species reacts differently to pest control treatments, changes in the species composition may require specifically adapted management solutions. Full article

Propyl-propane thiosulfonate (PTSO), an antioxidant organosulfur compound present in the genus Allium, has become a potential natural additive for food and feed, as well as a possible biopesticide for pest control in plants. A toxicological assessment is necessary to verify its safety for livestock, consumers, and the environment. As part of the risk assessment of PTSO, this study was designed to explore its potential reproductive toxicity in mice following the OECD 416 guideline. The investigation spans two generations to comprehensively evaluate potential reproductive, teratogenic, and hereditary effects. A total of 80 CD1 mice per sex and generation were subjected to PTSO exposure during three phases (premating, gestation, and lactation). This evaluation encompassed three dose levels: 14, 28, and 55 mg PTSO/kg b.w./day, administered through the feed. No clinical changes or mortality attributed to the administration of PTSO were observed in the study. Some changes in the body weight and food consumption were observed, but not related to sex or in a dose-dependent manner. The two parental generations (F0, F1) exhibited normal reproductive performance, and the offspring (F1 and F2) were born without any abnormalities. The serum sexual hormone levels (progesterone -P-, testosterone -T-, estradiol -E2-, follicular stimulating hormone -FSH-, and luteinizing hormone -LH-) were in a normal range. Although significant changes were observed in the sperm analysis in the case of F0 group, no variation was found for F1 group, and no alterations in fertility were recorded either. The absolute organ weights and relative organ weight/body weight and organ weight/brain weight ratios, and the complete histopathological study, showed no significant alterations in males and females for all the generations considered. Considering all the results obtained, PTSO is not considered a reproductive or developmental toxicant in mice under the assayed conditions. These results support the good safety profile of PTSO for its potential application in the agrifood sector. Full article

Plant pathogens present a major challenge to crop production, leading to decreased yield and quality during growth and storage. During long-term storage, healthy onions can develop diseases from latent pathogen infections. This poses a challenge for onion growers because infected bulbs without visible symptoms can lead to significant crop losses during the growing season. In this study, we aimed to isolate and identify Fusarium species from yellow onion bulbs (Allium cepa L.) that developed disease symptoms during storage. The aggressiveness of these strains against onion bulbs and seedlings was also evaluated. The isolated strains were further subjected to morphological and molecular differentiation. The results revealed that all 16 isolated strains belonged to the Fusarium complex species incarnatum-equiseti and Fusarium fujikuroi, namely, F. proliferatum (98%), F. oxysporum (1%), and Fusarium sp. (1%). Koch’s postulate analysis of isolated strains revealed varying aggressiveness on onion bulbs and plants depending on fungal species. Disease symptoms developed more slowly on plants than on onion bulb plants according to Koch’s postulates. Moreover, the results revealed that Fusarium strains that can infect onion plants were less pathogenic to onion bulbs and vice versa. In addition, three isolates were found to be non-pathogenic to onions. Furthermore, the in vitro control of Fusarium species through Bacillus velezensis KS04-AU and Streptomyces albidoflavus MGMM6 showed high potential for controlling the growth of these pathogenic fungi. These results may contribute to the development of environmentally friendly approaches for controlling onion spoilage caused by pathogens during storage. Full article

Fusarium oxysporum f. sp. cepae (Foc) causes basal rot disease in Allium species, including onions (Allium cepa L.) and shallots (A. cepa L. Aggregatum group). Among Allium species, shallots can be crossbred with onions and are relatively more resistant to Foc than onions. Thus, shallots are considered a potential disease-resistant resource for onions. However, the mechanisms underlying the molecular interactions between shallots and Foc remain unclear. This study demonstrated that SIX5, an effector derived from Foc (FocSIX5), acts as an avirulence effector in shallots. We achieved this by generating a FocSIX5 gene knockout mutant in Foc, for which experiments which revealed that it caused more severe wilt symptoms in Foc-resistant shallots than the wild-type Foc and FocSIX5 gene complementation mutants. Moreover, we demonstrated that a single amino acid substitution (R67K) in FocSIX5 was insufficient to overcome shallot resistance to Foc. Full article

The onion (Allium cepa L.) belongs to the family Alliaceae and has paramount importance among vegetable crops around the globe. Salinity stress and the soil-borne fungus Fusarium oxysporum f. sp. Cepa (FOC), which is the cause of basal rot, are potentially hazardous factors related to the yield of onion crops. The present study was conducted in CRD using three replicates in in vitro conditions and in a greenhouse to investigate the impact of stress factors (salinity levels and FOC) (T₁ = Negative control; T₂ = Positive control (FOC); T₃ = EC 2.5 dS m⁻¹; T₄ = EC 3.5 dS m⁻¹; T₅ = EC 4.5 dS m⁻¹; T₆ = EC 2.5 dS m⁻¹ + FOC; T₇ = EC 3.5 dS m⁻¹ + FOC; and T₈ = EC 4.5 dS m⁻¹ + FOC) on the morphological, physiological, and yield parameters of onions. Fungal biomass, in the in vitro condition, increased at a salinity level of 2–8 dS m⁻¹. In the greenhouse, the application of salinity levels, viz. 2.5, 3.5, and 4.5 dS m⁻¹, and fungal pathogens exhibited a more severe impact on the severity of the disease, onion growth, and bulb compared to sole stress. Overall, the decreased levels of osmotic potential, total chlorophyll content, membrane stability index, and total protein were assessed in onion leaves, whereas total phenolics were enhanced in the mentioned stress conditions. Sugar contents were reduced due to the sole application of pathogens, whereas they were enhanced in the sole application of salinity stress and increased due to a combination of FOC and salinity level applications. Polyphenol oxidase (PPO) activity was not altered as a result of pathogen infection, while peroxidase (PO) and phenylalanine ammonia-lyase (PAL) contents were enhanced, and the activity of catalase (CAT) was reduced. Sole stress along with the combined application of salinity levels with fungal pathogens exhibited enhanced PO and PPO activity; in contrast, CAT and PAL activity decreased. In summary, onion crop cultivation in saline soil conditions increases the disease’s severity, which is caused by FOC. Furthermore, it is crucial to carry out field trials while considering these outcomes in order to support a strong strategy for reducing the tested stresses within a wider range of environmental conditions. Full article

The Mediterranean basin is rich in wild edible species which have been used for food and medicinal purposes by humans throughout the centuries. Many of these species can be found near coastal areas and usually grow under saline conditions, while others can adapt in various harsh conditions including high salinity. Many of these species have a long history of gathering from the wild as a source of food. The aim of this contribution is an overview on the most important halophyte species (Salicornia sp. pl., Arthrocaulon macrostachyum (Moric.) Piirainen & G. Kadereit, Soda inermis Fourr., Cakile maritima Scop., Crithmum maritimum L., Reichardia picroides (L.) Roth., Silene vulgaris (Moench) Garcke subsp. tenoreana (Colla) Soldano & F. Conti, Allium commutatum Guss., Beta vulgaris L. subsp. maritima (L.) Arcang., Capparis spinosa L.) that traditionally have been gathered by rural communities in southern Italy, with special interest on their ecology and distribution, traditional uses, medicinal properties, marketing and early attempts of cultivation. It is worth noting that these species have an attractive new cash crop for marsh marginal lands. Full article

Fusarium basal rot (FBR), caused by a soil-borne fungus, Fusarium oxysporum f. sp. cepae (FOC), is a major disease hindering onion production worldwide. This study was conducted to evaluate the initial and the most advanced selected populations of seven open-pollinated short-day onion cultivars for FBR susceptibility, along with two check cultivars using the conidial inoculation of mature bulbs for two consecutive years. The artificial inoculation of mature bulbs was carried out by applying a virulent FOC isolate ‘CSC 515’ at a final concentration of 3.0 × 10⁴ spores mL⁻¹ to the transversely cut basal plates of onion bulbs. The basal plates of 20 arbitrarily chosen bulbs per plot were recut after 20 days of incubation and then were rated for FBR severity using a rating scale of 1 (no disease) to 9 (≥70% of the basal plate is infected). The bulbs with a rating of 1 were saved and then bulked to form the seeds for the next generation. The selected populations exhibited a variable response for FBR severity when evaluated over two years, with an improvement in the most advanced selections observed for a majority of the cultivars. For example, the advanced selections of ‘NuMex Sweetpak’ exceeded the partially resistant check ‘Serrana’ in their levels of resistance when both were evaluated in the second year. A conidial inoculation can be effective in the development of FBR-resistant cultivars. In addition, this inoculation method can accelerate breeding efforts by determining the genetic mechanism(s) responsible for FBR resistance, locating quantitative trait loci, and facilitating marker-assisted selection. Full article

This study aimed to assess the effect of milk source and bear garlic addition on the selected properties of soft rennet cheese. Cheeses were produced from cow milk derived from two sources: Polish Red cows (PR) and Polish Holstein-Friesian cows (PHF) with a 0.5% (w/w) addition of bear garlic (Allium ursinum L.) dried leaves. Chemical composition and fatty acid profiles (GC) were determined in fresh cheeses. Fresh and stored for two weeks cheeses were subjected to microbiological studies, i.e., total aerobic bacteria count (TABC); count of Lactococcus sp., yeast and molds; coliforms; analysis of the proteolysis extension by means of o-phthaldialdehyde (OPA) assay and free amino acids content (HPLC); antioxidant capacity as 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging activity and ferric reducing antioxidant power (FRAP); as well as pH and water activity. Cheeses with bear garlic herbs were more prone to proteolysis but this was not accompanied by any effect on the microbial counts, water activity or pH. Cheeses produced from PR milk contained less monounsaturated fatty acids (MUFA) but were richer in n-3 PUFA and had a lower n-6/n-3 FA ratio than cheeses from PHF milk. Bear garlic addition increased DPPH anti-radical power but had less of an effect on the FRAP values. Full article