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15 pages, 1839 KiB  
Article
Cluster Complementarity and Consistency Mining for Multi-View Representation Learning
by Yanyan Wen and Haifeng Li
Mathematics 2025, 13(15), 2521; https://doi.org/10.3390/math13152521 - 5 Aug 2025
Abstract
With the advent of the big data era, multi-view clustering (MVC) methods have attracted considerable acclaim due to their capability in handling the multifaceted nature of data, which achieves impressive results across various fields. However, two significant challenges persist in MVC methods: (1) [...] Read more.
With the advent of the big data era, multi-view clustering (MVC) methods have attracted considerable acclaim due to their capability in handling the multifaceted nature of data, which achieves impressive results across various fields. However, two significant challenges persist in MVC methods: (1) They resort to learning view-invariant information of samples to bridge the heterogeneity gap between views, which may result in the loss of view-specific information that contributes to pattern mining. (2) They utilize fusion strategies that are susceptible to the discriminability of views, i.e., the concatenation and the weighing fusion of cross-view representations, to aggregate complementary and consistent information, which is difficult to guarantee semantic robustness of fusion representations. To this end, a simple yet effective cluster complementarity and consistency learning framework (CommonMVC) is proposed for mining patterns of multiview data. Specifically, a cluster complementarity learning is devised to endow fusion representations with discriminate information via nonlinearly aggregating view-specific information. Meanwhile, a cluster consistency learning is introduced via modeling instance-level and cluster-level partition invariance to coordinate the clustering partition of various views, which ensures the robustness of multi-view data pattern mining. Seamless collaboration between two components effectively enhances multi-view clustering performance. Finally, comprehensive experiments on four real-world datasets demonstrate CommonMVC establishes a new state-of-the-art baseline for the MVC task. Full article
(This article belongs to the Special Issue Artificial Intelligence and Data Science, 2nd Edition)
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12 pages, 1076 KiB  
Article
Rapid Identification of the SNP Mutation in the ABCD4 Gene and Its Association with Multi-Vertebrae Phenotypes in Ujimqin Sheep Using TaqMan-MGB Technology
by Yue Zhang, Min Zhang, Hong Su, Jun Liu, Feifei Zhao, Yifan Zhao, Xiunan Li, Yanyan Yang, Guifang Cao and Yong Zhang
Animals 2025, 15(15), 2284; https://doi.org/10.3390/ani15152284 - 5 Aug 2025
Viewed by 46
Abstract
Ujimqin sheep, known for its distinctive multi-vertebrae phenotypes (T13L7, T14L6, and T14L7) and economic value, has garnered significant attention. However, conventional phenotypic detection methods suffer from low efficiency and high costs. In this study, based on a key SNP locus (ABCD4 gene, [...] Read more.
Ujimqin sheep, known for its distinctive multi-vertebrae phenotypes (T13L7, T14L6, and T14L7) and economic value, has garnered significant attention. However, conventional phenotypic detection methods suffer from low efficiency and high costs. In this study, based on a key SNP locus (ABCD4 gene, Chr7:89393414, C > T) identified through a genome-wide association study (GWAS), a TaqMan-MGB (minor groove binder) genotyping system was developed. the objective was to establish a high-throughput and efficient molecular marker-assisted selection (MAS) tool. Specific primers and dual fluorescent probes were designed to optimize the reaction system. Standard plasmids were adopted to validate genotyping accuracy. A total of 152 Ujimqin sheep were subjected to TaqMan-MGB genotyping, digital radiography (DR) imaging, and Sanger sequencing. the results showed complete concordance between TaqMan-MGB and Sanger sequencing, with an overall agreement rate of 83.6% with DR imaging. For individuals with T/T genotypes (127/139), the detection accuracy reached 91.4%. This method demonstrated high specificity, simplicity, and cost-efficiency, significantly reducing the time and financial burden associated with traditional imaging-based approaches. the findings indicate that the TaqMan-MGB technique can accurately identify the T/T genotype at the SNP site and its strong association with the multi-vertebrae phenotypes, offering an effective and reliable tool for molecular breeding of Ujimqin sheep. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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33 pages, 11892 KiB  
Article
Experimental Study on Mechanical Properties of Waste Steel Fiber Polypropylene (EPP) Concrete
by Yanyan Zhao, Xiaopeng Ren, Yongtao Gao, Youzhi Li and Mingshuai Li
Buildings 2025, 15(15), 2680; https://doi.org/10.3390/buildings15152680 - 29 Jul 2025
Viewed by 190
Abstract
Polypropylene (EPP) concrete offers advantages such as low density and good thermal insulation properties, but its relatively low strength limits its engineering applications. Waste steel fibers (WSFs) obtained during the sorting and processing of machining residues can be incorporated into EPP concrete (EC) [...] Read more.
Polypropylene (EPP) concrete offers advantages such as low density and good thermal insulation properties, but its relatively low strength limits its engineering applications. Waste steel fibers (WSFs) obtained during the sorting and processing of machining residues can be incorporated into EPP concrete (EC) to enhance its strength and toughness. Using the volume fractions of EPP and WSF as variables, specimens of EPP concrete (EC) and waste steel fiber-reinforced EPP concrete (WSFREC) were prepared and subjected to cube compressive strength tests, splitting tensile strength tests, and four-point flexural strength tests. The results indicate that EPP particles significantly improve the toughness of concrete but inevitably lead to a considerable reduction in strength. The incorporation of WSF substantially enhanced the splitting tensile strength and flexural strength of EC, with increases of at least 37.7% and 34.5%, respectively, while the improvement in cube compressive strength was relatively lower at only 23.6%. Scanning electron microscopy (SEM) observations of the interfacial transition zone (ITZ) and WSF surface morphology in WSFREC revealed that the addition of EPP particles introduces more defects in the concrete matrix. However, the inclusion of WSF promotes the formation of abundant hydration products on the fiber surface, mitigating matrix defects, improving the bond between WSF and the concrete matrix, effectively inhibiting crack propagation, and enhancing both the strength and toughness of the concrete. Full article
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22 pages, 3082 KiB  
Article
A Lightweight Intrusion Detection System with Dynamic Feature Fusion Federated Learning for Vehicular Network Security
by Junjun Li, Yanyan Ma, Jiahui Bai, Congming Chen, Tingting Xu and Chi Ding
Sensors 2025, 25(15), 4622; https://doi.org/10.3390/s25154622 - 25 Jul 2025
Viewed by 338
Abstract
The rapid integration of complex sensors and electronic control units (ECUs) in autonomous vehicles significantly increases cybersecurity risks in vehicular networks. Although the Controller Area Network (CAN) is efficient, it lacks inherent security mechanisms and is vulnerable to various network attacks. The traditional [...] Read more.
The rapid integration of complex sensors and electronic control units (ECUs) in autonomous vehicles significantly increases cybersecurity risks in vehicular networks. Although the Controller Area Network (CAN) is efficient, it lacks inherent security mechanisms and is vulnerable to various network attacks. The traditional Intrusion Detection System (IDS) makes it difficult to effectively deal with the dynamics and complexity of emerging threats. To solve these problems, a lightweight vehicular network intrusion detection framework based on Dynamic Feature Fusion Federated Learning (DFF-FL) is proposed. The proposed framework employs a two-stream architecture, including a transformer-augmented autoencoder for abstract feature extraction and a lightweight CNN-LSTM–Attention model for preserving temporal and local patterns. Compared with the traditional theoretical framework of the federated learning, DFF-FL first dynamically fuses the deep feature representation of each node through the transformer attention module to realize the fine-grained cross-node feature interaction in a heterogeneous data environment, thereby eliminating the performance degradation caused by the difference in feature distribution. Secondly, based on the final loss LAEX,X^ index of each node, an adaptive weight adjustment mechanism is used to make the nodes with excellent performance dominate the global model update, which significantly improves robustness against complex attacks. Experimental evaluation on the CAN-Hacking dataset shows that the proposed intrusion detection system achieves more than 99% F1 score with only 1.11 MB of memory and 81,863 trainable parameters, while maintaining low computational overheads and ensuring data privacy, which is very suitable for edge device deployment. Full article
(This article belongs to the Section Sensor Networks)
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14 pages, 3439 KiB  
Article
The Novel Diketopiperazine Derivative, Compound 5-3, Selectively Inhibited the Proliferation of FLT3-ITD Mutant Acute Myeloid Leukemia (AML) Cells
by Shijie Bi, Yating Cao, Shiyuan Fang, Yanyan Chu, Zixuan Zhang, Meng Li, Rilei Yu, Jinbo Yang, Yu Tang and Peiju Qiu
Mar. Drugs 2025, 23(7), 289; https://doi.org/10.3390/md23070289 - 16 Jul 2025
Viewed by 518
Abstract
The internal tandem duplication mutation of FMS-like tyrosine kinase 3 (FLT3-ITD) is associated with high recurrence and mortality rates in acute myeloid leukemia (AML), making it a critical target for anti-AML therapies. Plinabulin is a diketopiperazines derivative that exhibits extensive anti-cancer potency by [...] Read more.
The internal tandem duplication mutation of FMS-like tyrosine kinase 3 (FLT3-ITD) is associated with high recurrence and mortality rates in acute myeloid leukemia (AML), making it a critical target for anti-AML therapies. Plinabulin is a diketopiperazines derivative that exhibits extensive anti-cancer potency by targeting β-tubulin. We designed and synthesized a novel FLT3 inhibitor, namely 5-3, based on the structure of plinabulin and evaluated its effect on FLT3-ITD mutant AML cells. The results indicated that 5-3 potently and selectively inhibits the growth of mutant FLT3-expressingleukemia cells, and had no effect on FLT3 wide-type cancer cells, suggesting the antiproliferative activity of 5-3 depends highly on FLT3-ITD expression. Mechanically, 5-3 significantly suppressed the phosphorylation of FLT3 signaling pathway, including STAT5, Erk and Akt. Moreover, the efficiency of compound 5-3 is not associated with Plinabulin’s typical target, β-tubulin. In conclusion, the study identified diketopiperazine derivative as a novel FLT3-ITD selective inhibitor. These results demonstrated that 5-3 might be a drug candidate for the treatment of FLT3-ITD-positive AML. Full article
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25 pages, 2972 KiB  
Review
Targeted Degradation Technologies Utilizing Autophagy
by Zeyu Zhou, Jiaming Liang, Binghua Cheng, Yanyan Li, Wenjie Zhou, Hui Tian, Wenli Shi, Ke Liu, Lijing Fang, Hongchang Li and Ximing Shao
Int. J. Mol. Sci. 2025, 26(14), 6576; https://doi.org/10.3390/ijms26146576 - 8 Jul 2025
Viewed by 784
Abstract
Targeted degradation technologies, primarily referring to targeted protein degradation, have emerged as promising drug discovery strategies. In contrast to traditional “occupancy-driven” inhibition approaches, these technologies ingeniously leverage the cell’s endogenous degradation mechanisms to achieve specific elimination of disease-causing targets. Autophagy, a highly conserved [...] Read more.
Targeted degradation technologies, primarily referring to targeted protein degradation, have emerged as promising drug discovery strategies. In contrast to traditional “occupancy-driven” inhibition approaches, these technologies ingeniously leverage the cell’s endogenous degradation mechanisms to achieve specific elimination of disease-causing targets. Autophagy, a highly conserved cellular clearance pathway, possesses broad substrate recognition capabilities, enabling degradation of not only individual proteins but also protein aggregates, damaged organelles, and invading pathogens. Given these characteristics, researchers are actively exploring the application of autophagy mechanisms in targeted degradation technologies. Herein, we summarize recent advances in autophagy-dependent degradation approaches, including autophagosome tethering compounds (ATTEC), autophagy-targeting chimeras (AUTAC), autophagy-targeting Chimera (AUTOTAC), chaperone-mediated autophagy (CMA)-based methods, nanotechnology-based strategies, and the newly introduced autophagy-induced antibody (AUTAB) technique, highlighting their mechanisms, advantages, and potential applications in treating tumors, neurodegenerative diseases, and other challenging conditions. Full article
(This article belongs to the Section Biochemistry)
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23 pages, 5105 KiB  
Article
Behavioral, Hematological, Histological, Physiological Regulation and Gene Expression in Response to Heat Stress in Amur Minnow (Phoxinus lagowskii)
by Weijie Mu, Jing Wang, Yanyan Zhou, Shibo Feng, Ye Huang and Qianyu Li
Fishes 2025, 10(7), 335; https://doi.org/10.3390/fishes10070335 - 8 Jul 2025
Viewed by 412
Abstract
Rising water temperatures due to climate change pose a significant threat to Phoxinus lagowskii, a cold-water fish that is ecologically vital to the high-latitude regions of China. This study assessed heat stress effects on behavioral, hematological, histological, physiological, and molecular responses in [...] Read more.
Rising water temperatures due to climate change pose a significant threat to Phoxinus lagowskii, a cold-water fish that is ecologically vital to the high-latitude regions of China. This study assessed heat stress effects on behavioral, hematological, histological, physiological, and molecular responses in P. lagowskii. The critical maximum temperature (CTmax) was determined using the loss of equilibrium (LOE) method, with the CTmax reaching 29 °C. Elevated temperatures lead to an increase in the OBR. Fish were subjected to acute heat stress at 28 °C (below CTmax) for 48 h, with samples collected during the 48 h period. RBC, WBC, HGB, and HCT significantly increased during heat stress but decreased 12 h after heat stress. The levels of serum cortisol and blood glucose after heat stress were significantly higher than those in the control group. After heat stress, the height of the ILCM in the gills increased significantly, and the liver exhibited vacuolar degeneration and hypopigmentation. The activities of Na+-K+-ATPase and Ca2+-Mg2+-ATPase in the gills initially increased and then decreased over the duration of heat stress. Most enzyme activities (PK, LDH, PFK, and HK) decreased during heat stress, while LPL and HL levels increased, indicating that lipid metabolism was the primary utilization process under heat stress. There was an increase in SOD activity at 12 h, followed by a decrease at 24 h, and an increase in CAT activity under heat stress. Integrated biomarker response (IBR) and principal component analysis (PCA) were employed to synthesize multi-level responses. The IBR values reached their peak at 3 h and 48 h of heat stress. We observed an upregulation of heat shock proteins (Hsp70, Hsp90, and Hsc70) as well as interleukin-10 (IL-10) in response to heat stress. Our findings offer novel insights into the mechanisms underlying the heat stress response in P. lagowskii, thereby enhancing our understanding of the effects of heat stress on cold-water fish. Full article
(This article belongs to the Special Issue Environmental Physiology of Aquatic Animals)
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17 pages, 2835 KiB  
Article
Effects of Aged Biochar on Remediation of Cd-Contaminated Soil and Greenhouse Gas Emission in Chinese Cabbage (Brassica chinensis L.) Growth
by Yanyan Lu, Xiaoyi Zhao, Yuxuan Li, Guanlin Li, Guizhu Wu, Qianwu Wang, Jian Li and Daolin Du
Horticulturae 2025, 11(7), 800; https://doi.org/10.3390/horticulturae11070800 - 5 Jul 2025
Viewed by 385
Abstract
Biochar has demonstrated effectiveness in environmental remediation. However, the physicochemical properties of biochar change with natural aging, which potentially impacts its efficacy. This study was designed to evaluate the effects of aged biochar (at 1% and 5% rates) on the growth of Chinese [...] Read more.
Biochar has demonstrated effectiveness in environmental remediation. However, the physicochemical properties of biochar change with natural aging, which potentially impacts its efficacy. This study was designed to evaluate the effects of aged biochar (at 1% and 5% rates) on the growth of Chinese cabbage, greenhouse gas emission, and Cd remediation in soils. Canada goldenrod (Solidago canadensis L.) feedstock biochar was subjected to three artificial aging processes (freeze–thaw cycle, dry–wet cycle, and hydrogen peroxide oxidation) to prepare aged biochar. Results showed that aging significantly altered properties and structure of biochar. Biochar addition had no effect on CH4 emissions, but it decreased cumulative N2O emission (all treatments) and increased cumulative CO2 emission (only the pristine biochar at 5% application rate). Aged biochar showed no effect on microbial life strategy and Shannon index. However, PB-5% application shifted the life history strategies of A-strategists (resource acquisition microbe) towards Y-strategists (high-yield microbe) such as Proteobacteria, Gemmatimonadota, Bacteroidota, Firmicutes and Actinobacteriota, which partially attributed to the enhanced soil CO2 emission. Aged biochar reduced plant uptake Cd and soil available Cd concentrations by up to 36.6% and 34.0%, respectively, ascribing to improved soil physicochemical properties and functional bacterial abundance. Full article
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15 pages, 1616 KiB  
Article
ScnR1-Mediated Competitive DNA Binding and Feedback Inhibition Regulate Guvermectin Biosynthesis in Streptomyces caniferus
by Haoran Shi, Jiabin Wang, Xuedong Zhang, Na Zhou, Xiangjing Wang, Wensheng Xiang, Shanshan Li and Yanyan Zhang
Biology 2025, 14(7), 813; https://doi.org/10.3390/biology14070813 - 4 Jul 2025
Viewed by 228
Abstract
Guvermectin, a Streptomyces-derived purine nucleoside compound, exhibits dual bioactivities as a plant growth regulator and an antibacterial agent. While its biosynthetic gene cluster (BGC) is regulated by the cluster-situated activator GvmR and the adjacent repressor GvmR2, the role of distal transcriptional regulators [...] Read more.
Guvermectin, a Streptomyces-derived purine nucleoside compound, exhibits dual bioactivities as a plant growth regulator and an antibacterial agent. While its biosynthetic gene cluster (BGC) is regulated by the cluster-situated activator GvmR and the adjacent repressor GvmR2, the role of distal transcriptional regulators (TRs) in guvermectin biosynthesis remains unexplored. Here, we identified ScnR1, a highly conserved LacI-family TR located far from the guvermectin BGC, which is directly activated by GvmR. Overexpression of scnR1 significantly suppressed guvermectin biosynthesis. Further investigations revealed that ScnR1 competitively binds to the gvmR, gvmA, and O1 promoters (overlapping with the GvmR-binding sites), thereby inhibiting the guvermectin BGC transcription. Moreover, ScnR1 formed a reciprocal feedback loop with the adjacent repressor GvmR2, where each repressor inhibits the other’s expression. These findings reveal a multi-layered regulatory mechanism wherein LacI-family TRs fine-tune guvermectin biosynthesis through competitive DNA binding and reciprocal feedback control. This study offers new perspectives on the hierarchical control of secondary metabolism in Streptomyces and provides valuable theoretical guidance for the engineering of strains with enhanced natural product production. Full article
(This article belongs to the Section Microbiology)
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14 pages, 2756 KiB  
Article
Mechanistic Insights into the Bornyl Diphosphate Synthase from Lavandula angustifolia
by Dafeng Liu, Na Li, Feng Yu, Yanyan Du, Hongjun Song and Wenshuang Yao
Curr. Issues Mol. Biol. 2025, 47(7), 517; https://doi.org/10.3390/cimb47070517 - 4 Jul 2025
Viewed by 307
Abstract
Lavender species hold substantial economic importance due to their widespread cultivation for essential oils (EOs). Lavender EOs contain terpenes essential for industries such as cosmetics, personal care, and pharmaceuticals. In the biosynthetic pathway of EOs, Lavandula angustifolia bornyl diphosphate synthase (LaBPPS) catalyzes the [...] Read more.
Lavender species hold substantial economic importance due to their widespread cultivation for essential oils (EOs). Lavender EOs contain terpenes essential for industries such as cosmetics, personal care, and pharmaceuticals. In the biosynthetic pathway of EOs, Lavandula angustifolia bornyl diphosphate synthase (LaBPPS) catalyzes the conversion of geranyl diphosphate (GPP) to bornyl diphosphate (BPP). However, the functional mechanisms of LaBPPS remain poorly understood. Here, we conducted mutational experiments based on the molecular docking results, and found that mutations at positions D356A, D360A, R497A, D501A, or E508A led to a 50- to 100-fold reduction in the activity. Deletion of region 1–58 (∆1–58) did not affect activity compared to the wild-type (WT) protein, while deletions of regions 1–74 or 59–74 (∆1–74 or ∆59–74) significantly decreased the activity. Conversely, deletion of residues 578–602 (∆578–602) dramatically increased the activity. The LaBPPS gene showed dramatically higher expression levels in flowers compared to other tissues (stems, leaves and roots), peaking at 8:00. Our results provide valuable insights into EO biosynthesis in lavender and suggest potential strategies for genetic engineering aimed at improving EO quality. Full article
(This article belongs to the Section Molecular Plant Sciences)
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12 pages, 3805 KiB  
Article
Preparation of Graft-Functionalized SBS/SBS Composite Latex Modifier and Its Effect on Emulsified Asphalt Properties
by Kunyu Wang, Yifan Liu, Zhenhao Cao, Yanyan Zhang, Jia Wang and Xue Li
Processes 2025, 13(7), 2125; https://doi.org/10.3390/pr13072125 - 3 Jul 2025
Viewed by 352
Abstract
To broaden clean asphalt modification methods, this study employs a composite polymer of maleic anhydride-grafted styrene-butadiene-styrene (MA-g-SBS) and styrene-butadiene-styrene (SBS) as a modifier. The composite is formulated into polymer latex and used to modify emulsified asphalt. Routine performance tests were conducted on MA-g-SBS/SBS [...] Read more.
To broaden clean asphalt modification methods, this study employs a composite polymer of maleic anhydride-grafted styrene-butadiene-styrene (MA-g-SBS) and styrene-butadiene-styrene (SBS) as a modifier. The composite is formulated into polymer latex and used to modify emulsified asphalt. Routine performance tests were conducted on MA-g-SBS/SBS composite latex-modified emulsified asphalt (MSMEA) with varying ratios to determine the optimal composition. The ideal ratio was found to be MA-g-SBS:SBS = 1:4. Subsequently, conventional property tests, rheological analyses, microphase structure observations, and bending beam creep tests were conducted on MSMEA with the optimal ratio to assess the impact of the composite latex on asphalt performance. Findings indicated that increasing the latex content significantly enhanced the softening point and ductility while reducing penetration. These macroscopic improvements were notably superior to those achieved with single SBS latex modification. Fluorescence microscopy revealed that at low dosages, the MA-g-SBS/SBS composite dispersed uniformly as point-like structures within the asphalt. At higher dosages (above 5%), a distinct network structure emerged. The addition of the composite latex raised the complex shear modulus and rutting factor while reducing the phase angle, with pronounced fluctuations observed between 4% and 5% dosages. This suggests a substantial enhancement in the high-temperature performance of the emulsified asphalt, attributed to the formation of the network structure. FT-IR results confirmed that a chemical reaction occurred during the modification process. Additionally, the bending beam creep test demonstrated that the composite latex reduced asphalt brittleness and improved its low-temperature performance. Full article
(This article belongs to the Section Chemical Processes and Systems)
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11 pages, 2494 KiB  
Case Report
Prenatal Phenotype in a Neonate with Prader–Willi Syndrome and Literature Review
by Libing Luo, Mary Hoi Yin Tang, Shengmou Lin, Anita Sik-Yau Kan, Cindy Ka Yee Cheung, Xiaoying Dai, Ting Zeng, Yanyan Li, Lilu Nong, Haibo Huang, Chunchun Chen, Yue Xu and Kelvin Yuen Kwong Chan
Diagnostics 2025, 15(13), 1666; https://doi.org/10.3390/diagnostics15131666 - 30 Jun 2025
Viewed by 383
Abstract
Background and Clinical Significance: Prader–Willi syndrome (PWS) is a rare genetic disease caused by imprinted gene dysfunction, typically involving deletion of the chromosome 15q11.2-q13 region, balanced translocation, or related gene mutations in this region. PWS presents with complex and varied clinical manifestations. Abnormalities [...] Read more.
Background and Clinical Significance: Prader–Willi syndrome (PWS) is a rare genetic disease caused by imprinted gene dysfunction, typically involving deletion of the chromosome 15q11.2-q13 region, balanced translocation, or related gene mutations in this region. PWS presents with complex and varied clinical manifestations. Abnormalities can be observed from the fetal stage and change with age, resulting in growth, developmental, and metabolic issues throughout different life stages. Case Presentation: We report the prenatal characteristics observed from the second to third trimester of pregnancy in a neonate with PWS. Prenatal ultrasound findings included a single umbilical artery, poor abdominal circumference growth from 26 weeks, normal head circumference and femur length growth, increased amniotic fluid volume after 30 weeks, undescended fetal testicles in the third trimester, small kidneys, and reduced fetal movement. The male infant was born at 38 weeks of gestation with a birth weight of 2580 g. He had a weak cry; severe hypotonia; small eyelid clefts; bilateral cryptorchidism; low responsiveness to medical procedures such as blood drawing; and poor sucking, necessitating tube feeding. Blood methylation-specific multiple ligation-dependent probe amplification (MS-MLPA) showed paternal deletion PWS. Notably, this case revealed two previously unreported prenatal features in PWS: a single umbilical artery and small kidneys. Conclusions: Through literature review and our case presentation, we suggest that a combination of specific sonographic features, including these newly identified markers, may aid clinicians in the early diagnosis of PWS. Full article
(This article belongs to the Section Clinical Diagnosis and Prognosis)
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20 pages, 4779 KiB  
Article
Genome-Wide Identification of SRS Gene Family in Wheat and Expression Analysis Under Abiotic Stress
by Yanan Yu, Qihang Chang, Chunyue Li, Kaiyue Wu, Yanyan Wang, Changhong Guo, Yongjun Shu and Yan Bai
Int. J. Mol. Sci. 2025, 26(13), 6289; https://doi.org/10.3390/ijms26136289 - 29 Jun 2025
Viewed by 306
Abstract
The SHORT INTERNODES-related sequence (SRS) gene family, comprising zinc finger and IXGH domain-containing transcription factors, serves as a critical regulator of plant biological processes and abiotic stress responses. In this study, the common wheat cultivar Chinese Spring was selected as the experimental material. [...] Read more.
The SHORT INTERNODES-related sequence (SRS) gene family, comprising zinc finger and IXGH domain-containing transcription factors, serves as a critical regulator of plant biological processes and abiotic stress responses. In this study, the common wheat cultivar Chinese Spring was selected as the experimental material. Comprehensive bioinformatic analysis was performed using ClustalX, MEGA, MEME, and PlantTFDB v5.0 to systematically characterize SRS family members within the wheat genome. The systematic examination of physicochemical properties, conserved domains, phylogenetic relationships, gene structures, and cis-acting elements was conducted, providing insights into the functional roles of this gene family in wheat growth and development. Fifteen SRS family members containing conserved zinc finger and IXGH domains were identified. Distinct expression patterns were observed among TaSRS subgroups: Members of Groups I, III, and V exhibited significantly higher transcript levels in roots, stems, leaves, and anthers compared to other subgroups. Notably, the majority of TaSRS genes, including representatives from Groups I, III, IV, and V, displayed responsiveness to NaCl and ABA stress treatments, suggesting their putative involvement in both salinity adaptation and phytohormone-mediated stress signaling. Differential expression patterns of TaSRS genes under NaCl and ABA stress were identified, revealing distinct regulatory impacts of these stressors on transcription. These findings establish a framework for investigating the molecular mechanisms underlying stress adaptation in wheat physiology. Full article
(This article belongs to the Special Issue Plant and Environmental Interactions (Abiotic Stress))
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12 pages, 2086 KiB  
Article
Factor Analysis of Semen Quality in Chicken and Its Impact on Fertility
by Yunlei Li, Yanyan Sun, Aixin Ni, Hailai Hagos Tesfay, Adamu Mani Isa, Yunhe Zong, Hui Ma, Jingwei Yuan and Jilan Chen
Animals 2025, 15(13), 1906; https://doi.org/10.3390/ani15131906 - 28 Jun 2025
Viewed by 395
Abstract
Evaluation of semen quality is crucial for predicting fertility success in artificial insemination and eventual rooster selection within poultry breeding programs. However, the multitude of parameters obtained in semen quality analysis makes it challenging for breeders to make informed selection decisions. This study [...] Read more.
Evaluation of semen quality is crucial for predicting fertility success in artificial insemination and eventual rooster selection within poultry breeding programs. However, the multitude of parameters obtained in semen quality analysis makes it challenging for breeders to make informed selection decisions. This study evaluated semen samples from 210 roosters in seven chicken breeds, using a computer-aided sperm analysis (CASA) system. A multivariate approach utilizing factor analysis (FA) was applied to simplify the data. The FA condensed 14 semen quality traits into 3 factors, linearity factor, velocity factor, and quantitative factor, explaining 75.82% of the original variations. The Beijing-You breed was selected to analyze the association between fertility and these semen quality factors, and we found high correlation between fertility and quantitative (r = 0.84) and linearity (r = 0.63) factors, and low correlation with the velocity factor (r = 0.19). Based on individual factor scores, breed clustering revealed distinct profiles with Houdan, Tibetan, and White Leghorn demonstrating lower sperm counts and poor linearity. Columbian Plymouth Rock exhibited high speed with poor linearity while Beijing-You, Rhode Island Red, and Barred Plymouth Rock displayed higher sperm counts with compromised speed and linearity. This study demonstrates that FA effectively consolidates multiple semen quality traits into fewer, biologically relevant factors. These findings provide valuable insights into breed-specific reproductive characteristics and offer actionable information for optimizing breeding in poultry production. Full article
(This article belongs to the Special Issue Livestock Fertility and Artificial Insemination)
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18 pages, 7674 KiB  
Article
Foliar Application of Bacillus thuringiensis Enhances Tea Quality and Plant Defense via Phyllosphere Microbiome Modulation
by Yulin Xiong, He Liu, Dongliang Li, Wei Xie, Zhong Wang, Xiaohong Fang, Jizhou Wang, Wei Chen, Xi Du, Yanyan Li, Chuanpeng Nie, Chuanhua Yin, Pumo Cai and Yongcong Hong
Agriculture 2025, 15(13), 1386; https://doi.org/10.3390/agriculture15131386 - 27 Jun 2025
Viewed by 320
Abstract
The plant microbiome plays a crucial role in the health of the tea plant, while Bacillus thuringiensis (Bt) is widely utilized as a biological pesticide in tea gardens, promoting sustainable agricultural practices. However, the effects of Bt spraying on tea quality and the [...] Read more.
The plant microbiome plays a crucial role in the health of the tea plant, while Bacillus thuringiensis (Bt) is widely utilized as a biological pesticide in tea gardens, promoting sustainable agricultural practices. However, the effects of Bt spraying on tea quality and the structure and function of the phyllosphere microbiome remain unclear. This study evaluated the effects of Bt spraying on tea quality, microbiome composition, diversity, and potential functions using tea leaf quality measurements and high-throughput sequencing of the 16S/ITS rDNA genes. Results showed that spraying Bt1 significantly increased the contents of free amino acids (by 15.27%), flavonoids (by 18.00%), soluble sugars (by 62.55%), and key compounds such as epicatechin gallate (by 10.50%), gallocatechin gallate (by 122.52%), and epigallocatechin gallate (by 61.29%), leading to improved leaf quality. Co-occurrence network analysis indicated that the community structure of both epiphytic and endophytic microbes became more complex after Bt treatment. The abundance of beneficial bacteria, such as Novosphingobium, Methylobacterium, and Sphingomonas, increased significantly, while pathogenic fungi like Aspergillus and Phyllosticta decreased. Functional prediction indicated enhanced amino acid metabolism, secondary metabolism, and carbohydrate metabolism, particularly the biosynthesis of flavonoids, which supports disease resistance and boosts secondary metabolite levels. Furthermore, Bt application reduced pathogenic fungi, enhancing the tea plant’s resistance to diseases. Overall, foliar spraying of Bt can positively alter the phyllosphere microbiome by enriching beneficial bacteria and improving metabolic functions, ultimately enhancing tea plant resistance and quality, and providing a scientific basis for sustainable pest management in tea cultivation. Full article
(This article belongs to the Section Crop Protection, Diseases, Pests and Weeds)
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