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Authors = Kwang-Hyun Baek

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31 pages, 6501 KiB  
Review
From Hormones to Harvests: A Pathway to Strengthening Plant Resilience for Achieving Sustainable Development Goals
by Dipayan Das, Hamdy Kashtoh, Jibanjyoti Panda, Sarvesh Rustagi, Yugal Kishore Mohanta, Niraj Singh and Kwang-Hyun Baek
Plants 2025, 14(15), 2322; https://doi.org/10.3390/plants14152322 - 27 Jul 2025
Viewed by 1224
Abstract
The worldwide agriculture industry is facing increasing problems due to rapid population increase and increasingly unfavorable weather patterns. In order to reach the projected food production targets, which are essential for guaranteeing global food security, innovative and sustainable agricultural methods must be adopted. [...] Read more.
The worldwide agriculture industry is facing increasing problems due to rapid population increase and increasingly unfavorable weather patterns. In order to reach the projected food production targets, which are essential for guaranteeing global food security, innovative and sustainable agricultural methods must be adopted. Conventional approaches, including traditional breeding procedures, often cannot handle the complex and simultaneous effects of biotic pressures such as pest infestations, disease attacks, and nutritional imbalances, as well as abiotic stresses including heat, salt, drought, and heavy metal toxicity. Applying phytohormonal approaches, particularly those involving hormonal crosstalk, presents a viable way to increase crop resilience in this context. Abscisic acid (ABA), gibberellins (GAs), auxin, cytokinins, salicylic acid (SA), jasmonic acid (JA), ethylene, and GA are among the plant hormones that control plant stress responses. In order to precisely respond to a range of environmental stimuli, these hormones allow plants to control gene expression, signal transduction, and physiological adaptation through intricate networks of antagonistic and constructive interactions. This review focuses on how the principal hormonal signaling pathways (in particular, ABA-ET, ABA-JA, JA-SA, and ABA-auxin) intricately interact and how they affect the plant stress response. For example, ABA-driven drought tolerance controls immunological responses and stomatal behavior through antagonistic interactions with ET and SA, while using SnRK2 kinases to activate genes that react to stress. Similarly, the transcription factor MYC2 is an essential node in ABA–JA crosstalk and mediates the integration of defense and drought signals. Plants’ complex hormonal crosstalk networks are an example of a precisely calibrated regulatory system that strikes a balance between growth and abiotic stress adaptation. ABA, JA, SA, ethylene, auxin, cytokinin, GA, and BR are examples of central nodes that interact dynamically and context-specifically to modify signal transduction, rewire gene expression, and change physiological outcomes. To engineer stress-resilient crops in the face of shifting environmental challenges, a systems-level view of these pathways is provided by a combination of enrichment analyses and STRING-based interaction mapping. These hormonal interactions are directly related to the United Nations Sustainable Development Goals (SDGs), particularly SDGs 2 (Zero Hunger), 12 (Responsible Consumption and Production), and 13 (Climate Action). This review emphasizes the potential of biotechnologies to use hormone signaling to improve agricultural performance and sustainability by uncovering the molecular foundations of hormonal crosstalk. Increasing our understanding of these pathways presents a strategic opportunity to increase crop resilience, reduce environmental degradation, and secure food systems in the face of increasing climate unpredictability. Full article
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4 pages, 152 KiB  
Editorial
New Insights into Plant Signaling Mechanisms in Biotic and Abiotic Stress
by Hamdy Kashtoh, Muhammad Fazle Rabbee and Kwang-Hyun Baek
Plants 2025, 14(13), 1953; https://doi.org/10.3390/plants14131953 - 26 Jun 2025
Viewed by 403
Abstract
Plants are constantly challenged by their environments, including both biotic and abiotic stress factors [...] Full article
25 pages, 5759 KiB  
Review
Signaling Pathways in Oxidative Stress-Induced Neurodegenerative Diseases: A Review of Phytochemical Therapeutic Interventions
by Zahra Sebghatollahi, Ruchika Yogesh, Neelima Mahato, Vijay Kumar, Yugal Kishore Mohanta, Kwang-Hyun Baek and Awdhesh Kumar Mishra
Antioxidants 2025, 14(4), 457; https://doi.org/10.3390/antiox14040457 - 12 Apr 2025
Cited by 3 | Viewed by 1940
Abstract
Oxidative stress, a pivotal driver of neurodegenerative diseases, results from an imbalance between the generation of reactive oxygen species (ROS) and cellular antioxidant defenses. This review provides a comprehensive analysis of key oxidative stress sources, focusing on NADPH oxidase (NOX) hyperactivity and mitochondrial [...] Read more.
Oxidative stress, a pivotal driver of neurodegenerative diseases, results from an imbalance between the generation of reactive oxygen species (ROS) and cellular antioxidant defenses. This review provides a comprehensive analysis of key oxidative stress sources, focusing on NADPH oxidase (NOX) hyperactivity and mitochondrial Uncoupling Protein (UCP) downregulation. Critically, we examine the therapeutic potential of phytochemicals in mitigating NOX-mediated ROS generation through direct enzyme inhibition, including impacts on NOX subunit assembly and gene expression. Furthermore, we explore the ability of phytochemicals to bolster cellular antioxidant defenses by activating the Kelch-like ECH-associated protein 1 (KEAP1)/nuclear factor erythroid 2-related factor 2 (Nrf2)/antioxidant response element (ARE) signaling pathway, elucidating the upregulation of antioxidant genes, such as GPx, SOD, CAT, and HO-1. This review expands beyond confined overviews; emphasizes specific molecular interactions between phytochemicals and target proteins, including NOX isoforms; and provides an in-depth analysis of the specific antioxidant genes upregulated via Nrf2. This approach aims to pave the way for targeted and translatable therapeutic strategies in neurodegenerative diseases. Ultimately, this review illuminates the intricate molecular dynamics of oxidative stress in neurodegenerative diseases; underscores the potential of phytochemicals to restore redox homeostasis and reverse pathological conditions through precise modulation of key signaling pathways. Full article
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22 pages, 2611 KiB  
Review
Exploring Potential Biomarkers in Recurrent Pregnancy Loss: A Literature Review of Omics Studies to Molecular Mechanisms
by Lan Li and Kwang-Hyun Baek
Int. J. Mol. Sci. 2025, 26(5), 2263; https://doi.org/10.3390/ijms26052263 - 4 Mar 2025
Viewed by 1985
Abstract
Recurrent pregnancy loss (RPL) is characterized by the occurrence of three or more consecutive spontaneous pregnancy losses before 20–24 weeks of gestation. Despite significant progress in the investigation of the biological pathways associated with unexplained RPL, the precise molecular mechanisms remain elusive. Recent [...] Read more.
Recurrent pregnancy loss (RPL) is characterized by the occurrence of three or more consecutive spontaneous pregnancy losses before 20–24 weeks of gestation. Despite significant progress in the investigation of the biological pathways associated with unexplained RPL, the precise molecular mechanisms remain elusive. Recent advances in multi-omics approaches have identified numerous biomarkers that offer potential avenues for understanding the underlying complexities of RPL. The aim of this comprehensive literature review was to investigate the functional roles of these candidate markers and explore the possible key mechanisms that may contribute to RPL. We also aimed to elucidate the functional networks predicted by omics analyses, which hold promise for providing invaluable insights into novel diagnostic and therapeutic strategies for women experiencing RPL. Furthermore, this review expands on clinical implications and possible applications, highlighting those currently moving towards clinical use and ongoing studies developing in this direction. Full article
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18 pages, 2041 KiB  
Review
Insights on the Role of Sialic Acids in Acute Lymphoblastic Leukemia in Children
by Kimberley Rinai Radu and Kwang-Hyun Baek
Int. J. Mol. Sci. 2025, 26(5), 2233; https://doi.org/10.3390/ijms26052233 - 1 Mar 2025
Cited by 1 | Viewed by 1231
Abstract
Sialic acids serve as crucial terminal sugars on glycoproteins or glycolipids present on cell surfaces. These sugars are involved in diverse physiological and pathological processes through their interactions with carbohydrate-binding proteins, facilitating cell–cell communication and influencing the outcomes of bacterial and viral infections. [...] Read more.
Sialic acids serve as crucial terminal sugars on glycoproteins or glycolipids present on cell surfaces. These sugars are involved in diverse physiological and pathological processes through their interactions with carbohydrate-binding proteins, facilitating cell–cell communication and influencing the outcomes of bacterial and viral infections. The role of hypersialylation in tumor growth and metastasis has been widely studied. Recent research has highlighted the significance of aberrant sialylation in enabling tumor cells to escape immune surveillance and sustain their malignant behavior. Acute lymphoblastic leukemia (ALL) is a heterogenous hematological malignancy that primarily affects children and is the second leading cause of mortality among individuals aged 1 to 14. ALL is characterized by the uncontrolled proliferation of immature lymphoid cells in the bone marrow, peripheral blood, and various organs. Sialic acid-binding immunoglobulin-like lectins (Siglecs) are cell surface proteins that can bind to sialic acids. Activation of Siglecs triggers downstream reactions, including induction of cell apoptosis. Siglec-7 and Siglec-9 have been reported to promote cancer progression by driving macrophage polarization, and their expressions on natural killer cells can inhibit tumor cell death. This comprehensive review aims to explore the sialylation mechanisms and their effects on ALL in children. Understanding the complex interplay between sialylation and ALL holds great potential for developing novel diagnostic tools and therapeutic interventions in managing this pediatric malignancy. Full article
(This article belongs to the Section Molecular Pathology, Diagnostics, and Therapeutics)
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16 pages, 5706 KiB  
Article
Effect of Fenugreek Extract on Testosterone Propionate-Induced Benign Prostatic Hyperplasia
by Jeong Yoon Lee, Jiyoung Bang, Jinhak Kim, Kwang-Soo Baek, Dongchan Oh and Yoo-Hyun Lee
Int. J. Mol. Sci. 2025, 26(3), 1261; https://doi.org/10.3390/ijms26031261 - 31 Jan 2025
Viewed by 5114
Abstract
Benign prostatic hyperplasia (BPH) is a noncancerous urinary disorder that is common in older adult men; however, its underlying mechanisms remain unclear. Fenugreek has some biological effects, including hyperglycemia regulation, immune response modulation, and anti-cancer properties; In this study, we investigated the ameliorative [...] Read more.
Benign prostatic hyperplasia (BPH) is a noncancerous urinary disorder that is common in older adult men; however, its underlying mechanisms remain unclear. Fenugreek has some biological effects, including hyperglycemia regulation, immune response modulation, and anti-cancer properties; In this study, we investigated the ameliorative effects of fenugreek seed extract (Forceterone® [FCT]) in a testosterone propionate (TP)-induced BPH animal model and its mechanisms in BPH-1 human prostate epithelial cells. Sprague Dawley (SD) rats were injected subcutaneously with TP (3 mg/kg) for 8 weeks to induce BPH while FCT was administered orally at 25, 50, and 100 mg/kg. In addition, BPH-1 cells were used to evaluate the inhibitory effects on cell proliferation and examine inflammatory cytokine expression. Treating rats with FCT decreased prostate weight, dihydrotestosterone (DHT) level, and proliferating cell nuclear antigen (PCNA) expression in the prostate. Furthermore, it decreased androgen receptor (AR), 5α-reductase 2, B-cell lymphoma 2 (Bcl-2), interleukin-6 (IL-6), tumor necrosis factor-alpha (TNF-α), and NF-κB expression in vitro and in vivo and increased Bcl-2-associated X protein (Bax) expression. FCT also inhibited cell proliferation dose dependently in BPH-1 cells. These findings showed the potential use of FCT as an alternative treatment for BPH. Full article
(This article belongs to the Special Issue Recent Advances in Medicinal Plants and Natural Products)
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17 pages, 643 KiB  
Article
A Comparator-Less Buck Converter with Fast Transient Response Using a Reactive Ramp Generator
by Young-Kyu Kim, Chung-Hee Jang, Dong-Hyun Shin and Kwang-Hyun Baek
Energies 2025, 18(2), 307; https://doi.org/10.3390/en18020307 - 12 Jan 2025
Viewed by 1219
Abstract
This paper introduces a voltage-mode DC-DC buck converter designed to address the challenges of high-frequency operation. The proposed comparator-less Reactive Ramp Generator (RRG) topology mitigates the issues associated with comparator delays, achieving a fast load transient response. By eliminating all comparators from the [...] Read more.
This paper introduces a voltage-mode DC-DC buck converter designed to address the challenges of high-frequency operation. The proposed comparator-less Reactive Ramp Generator (RRG) topology mitigates the issues associated with comparator delays, achieving a fast load transient response. By eliminating all comparators from the buck converter’s control circuit, we prevent potential delay-induced malfunctions, thereby enhancing overall operational reliability. The rapid response of the RRG, enabled by a short feedback loop, allows for swift output voltage regulation during load transients. Replacing comparators in the PWM controller with inverters effectively removes delay issues without adding complexity. Since the proposed design retains the conventional voltage-mode transfer function, standard type-3 compensation is readily applicable. Operating with a 3.3 V input, the buck converter provides an output range from 0.65 V to 3.0 V, achieving a settling time of 0.802 µs for load changes from 200 mA to 1 A, and 1.27 µs for load changes from 1 A to 200 mA. The proposed architecture achieves a peak efficiency of 92.78% at 2.4 V and 600 mA. Full article
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30 pages, 14586 KiB  
Review
Emerging Nanoparticle-Based Diagnostics and Therapeutics for Cancer: Innovations and Challenges
by Rachitha Puttasiddaiah, Nagaraj Basavegowda, Nityashree Kyathegowdanadoddi Lakshmanagowda, Vinay Basavegowda Raghavendra, Niju Sagar, Kandi Sridhar, Praveen Kumar Dikkala, Maharshi Bhaswant, Kwang-Hyun Baek and Minaxi Sharma
Pharmaceutics 2025, 17(1), 70; https://doi.org/10.3390/pharmaceutics17010070 - 7 Jan 2025
Cited by 6 | Viewed by 2589
Abstract
Malignant growth is expected to surpass other significant causes of death as one of the top reasons for dismalness and mortality worldwide. According to a World Health Organization (WHO) study, this illness causes approximately between 9 and 10 million instances of deaths annually. [...] Read more.
Malignant growth is expected to surpass other significant causes of death as one of the top reasons for dismalness and mortality worldwide. According to a World Health Organization (WHO) study, this illness causes approximately between 9 and 10 million instances of deaths annually. Chemotherapy, radiation, and surgery are the three main methods of treating cancer. These methods seek to completely eradicate all cancer cells while having the fewest possible unintended impacts on healthy cell types. Owing to the lack of target selectivity, the majority of medications have substantial side effects. On the other hand, nanomaterials have transformed the identification, diagnosis, and management of cancer. Nanostructures with biomimetic properties have been grown as of late, fully intent on observing and treating the sickness. These nanostructures are expected to be consumed by growth in areas with profound disease. Furthermore, because of their extraordinary physicochemical properties, which incorporate nanoscale aspects, a more prominent surface region, explicit geometrical features, and the ability to embody different substances within or on their outside surfaces, nanostructures are remarkable nano-vehicles for conveying restorative specialists to their designated regions. This review discusses recent developments in nanostructured materials such as graphene, dendrimers, cell-penetrating peptide nanoparticles, nanoliposomes, lipid nanoparticles, magnetic nanoparticles, and nano-omics in the diagnosis and management of cancer. Full article
(This article belongs to the Special Issue Nano-Drug Delivery Technologies for Cancer Immunotherapy)
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12 pages, 978 KiB  
Article
Development of Starter Cultures for Precision Fermentation of Kombucha with Enriched Gamma-Aminobutyric Acid (GABA) Content
by Geun-Hyung Kim, Kwang-Rim Baek, Ga-Eun Lee, Ji-Hyun Lee, Ji-Hyun Moon and Seung-Oh Seo
Fermentation 2025, 11(1), 17; https://doi.org/10.3390/fermentation11010017 - 2 Jan 2025
Viewed by 2316
Abstract
Kombucha, a fermented tea beverage, is produced through the symbiotic interaction of several microbial strains, including acetic acid bacteria, lactic acid bacteria, and yeast, collectively known as symbiotic culture of bacteria and yeast (SCOBY). As its health benefits and distinctive flavor gain wider [...] Read more.
Kombucha, a fermented tea beverage, is produced through the symbiotic interaction of several microbial strains, including acetic acid bacteria, lactic acid bacteria, and yeast, collectively known as symbiotic culture of bacteria and yeast (SCOBY). As its health benefits and distinctive flavor gain wider recognition, consumer demand and research on kombucha fermentation have increased. This study focused on developing starter cultures to produce functional kombucha through precision fermentation technology using selected microbial strains newly isolated from food sources. The isolated bacterial and yeast strains were evaluated and selected based on their fermentation characteristics. Notably, a lactic acid bacterial strain was chosen for its ability to overproduce the γ-amino butyric acid (GABA), a functional food component known to enhance cognitive function and reduce mental stress. To produce the GABA-fortified kombucha, selected single strains of Acetobacter pasteurianus, Lactiplantibacillus plantarum, and Saccharomyces cerevisiae were mixed and used as starter cultures. By optimizing the inoculation ratios and initial sugar concentration, a functional kombucha enriched with acetic acid, lactic acid, and GABA was successfully produced. The resulting kombucha demonstrated 2.2 mg/L of GABA production and 1.15 times higher antioxidant activity after the fermentation, highlighting its enhanced health-promoting properties. Full article
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14 pages, 882 KiB  
Article
An 11-Bit Single-Slope/Successive Approximation Register Analog-to-Digital Converters with On-Chip Fine Step Range Calibration for CMOS Image Sensors
by Seong-Jun Byun, Jee-Taeck Seo, Tae-Hyun Kim, Jeong-Hun Lee, Young-Kyu Kim and Kwang-Hyun Baek
Electronics 2025, 14(1), 83; https://doi.org/10.3390/electronics14010083 - 27 Dec 2024
Viewed by 1024
Abstract
This paper presents a novel high-precision 11-bit single-slope/successive approximation register analog-to-digital converter (SS/SAR ADC) architecture specifically designed for CMOS image sensors (CISs). The proposed design solves critical challenges in conventional ADCs by utilizing only two reference voltages, thereby minimizing voltage mismatch and completely [...] Read more.
This paper presents a novel high-precision 11-bit single-slope/successive approximation register analog-to-digital converter (SS/SAR ADC) architecture specifically designed for CMOS image sensors (CISs). The proposed design solves critical challenges in conventional ADCs by utilizing only two reference voltages, thereby minimizing voltage mismatch and completely eliminating the need for complex switch arrays. This unique approach reduces the transistor count by 64 per column ADC, significantly enhancing area efficiency and circuit simplicity. Furthermore, a groundbreaking on-chip fine step range calibration technique is introduced to mitigate the impact of parasitic capacitance, ensuring the precise alignment between coarse and fine steps and achieving exceptional linearity. Fabricated using a 0.18-µm CMOS process, the ADC demonstrates superior performance metrics, including a differential nonlinearity (DNL) of −1/+1.86 LSB, an integral nonlinearity (INL) of −2.74/+2.79 LSB, an effective number of bits (ENOB) of 8.3 bits, and a signal-to-noise and distortion ratio (SNDR) of 51.77 dB. Operating at 240 kS/s with a power consumption of 22.16 µW, the ADC achieves an outstanding figure-of-merit (FOMW) of 0.291 pJ/step. These results demonstrate the proposed architecture’s potential as a transformative solution for high-speed, energy-efficient CIS applications. Full article
(This article belongs to the Section Circuit and Signal Processing)
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24 pages, 6764 KiB  
Article
Salicylic Acid-Induced Expression Profiles of LRR and LRR-RLK Candidate Genes Modulate Mungbean Yellow Mosaic India Virus Resistance in Blackgram and Its Two Wild Non-Progenitors
by Mansi Shukla, Priyanka Kaundal, Shalini Purwar, Mukul Kumar, Chandragupt Maurya, Chirag, Awdhesh Kumar Mishra, Kwang-Hyun Baek and Chandra Mohan Singh
Plants 2024, 13(24), 3601; https://doi.org/10.3390/plants13243601 - 23 Dec 2024
Viewed by 951
Abstract
Blackgram is an important short-duration grain legume, but its yield is highly affected by various stresses. Among biotic stresses, yellow mosaic disease (YMD) is known as a devastating disease that leads to 100% yield loss under severe conditions. The cultivated lines possess resistance, [...] Read more.
Blackgram is an important short-duration grain legume, but its yield is highly affected by various stresses. Among biotic stresses, yellow mosaic disease (YMD) is known as a devastating disease that leads to 100% yield loss under severe conditions. The cultivated lines possess resistance, but exploring more diverse sources of resistance may be useful for pyramiding to improve the durability of said resistance. Some wild Vigna species have potentially demonstrated a high level of resistance. R-genes, including gene families of leucine-rich repeats (LRRs) and leucine-rich repeat receptor-like kinases (LRR-RLKs), are known for modulating the resistance in plants against various biotic stresses. The first comprehensive analysis of the LRR and LRR-RLK gene families in mungbean is reported in the present study. A total of forty-six candidate genes were identified and grouped into eight clades. Protein motif analysis showed that the “Pkinase domain” and “LRR domains” were conserved in most of the R-proteins. The expression of candidate genes viz. VrNBS_TNLRR-8, VrLRR_RLK-20, VrLRR_RLK-17, and VrLRR_RLK-19 demonstrated significantly up-regulated expression upon YMD infection in control and salicylic acid-primed (SA-primed) plants. The analysis provides insight into the diversity and robust candidate genes for functional studies modulating YMD resistance altered by salicylic acid. Full article
(This article belongs to the Special Issue Breeding and Cultivation Management of Legumes, Volume II)
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12 pages, 2009 KiB  
Article
Developing a Robust Fuzzy Inference Algorithm in a Dog Disease Pre-Diagnosis System for Casual Owners
by Kwang Baek Kim, Doo Heon Song and Hyun Jun Park
Animals 2024, 14(24), 3561; https://doi.org/10.3390/ani14243561 - 10 Dec 2024
Viewed by 770
Abstract
While the pet market is continuously rapidly increasing in Korea, pet dog owners feel uncomfortable in coping with pet dog’s health problems in time. In this paper, we propose a pre-diagnosis system based on neuro-fuzzy learning, enabling non-expert users to monitor their pets’ [...] Read more.
While the pet market is continuously rapidly increasing in Korea, pet dog owners feel uncomfortable in coping with pet dog’s health problems in time. In this paper, we propose a pre-diagnosis system based on neuro-fuzzy learning, enabling non-expert users to monitor their pets’ health by inputting observed symptoms. To develop such a system, we form a disease–symptom database based on several textbooks with veterinarians’ guidance and filtering. The system offers likely disease predictions and recommended coping strategies based on fuzzy inference. We evaluated three fuzzy inference algorithms—PFCM-R, FHAL, and MNFL. While PFCM-R achieved high accuracy with clean data, it struggled with noisy inputs. FHAL showed better noise tolerance but lower precision. PFCM-R is a variant of well-known fuzzy unsupervised learner FCM, and FHAL is the hybrid fuzzy inference engine based on Fuzzy Association Memory and a double-layered FCM we developed. To make the system more robust, we propose the multi-layered neuro-fuzzy learner (MNFL) in this paper, which effectively weakens the association strength between the disease and the observed symptoms, less related to the body part on which the abnormal symptoms are observed. In experiments that are designed to examine how the inference system reacts under increasing noisy input from the user, MNFL achieved 98% accuracy even with non-erroneous inputs, demonstrating superior robustness to other inference engines. This system empowers pet owners to detect health issues early, improving the quality of care and fostering more informed interactions with veterinarians, ultimately enhancing the well-being of companion animals. Full article
(This article belongs to the Section Human-Animal Interactions, Animal Behaviour and Emotion)
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9 pages, 710 KiB  
Article
Evaluation of the Diagnostic Efficacy of the AI-Based Software INF-M01 in Detecting Suspicious Areas of Bladder Cancer Using Cystoscopy Images
by Jongchan Kim, Won Sik Ham, Kyo Chul Koo, Jongsoo Lee, Hyun Kyu Ahn, Jae Yong Jeong, Sang Yeop Baek, Su Jin Lee and Kwang Suk Lee
J. Clin. Med. 2024, 13(23), 7110; https://doi.org/10.3390/jcm13237110 - 24 Nov 2024
Viewed by 1232
Abstract
Background/Objectives: We aimed to evaluate the accuracy of the artificial intelligence (AI)-based software INF-M01 in diagnosing suspected bladder tumors using cystoscopy images. Additionally, we aimed to assess the ability of INF-M01 to distinguish and mark suspected bladder cancer using whole cystoscopy images. Methods [...] Read more.
Background/Objectives: We aimed to evaluate the accuracy of the artificial intelligence (AI)-based software INF-M01 in diagnosing suspected bladder tumors using cystoscopy images. Additionally, we aimed to assess the ability of INF-M01 to distinguish and mark suspected bladder cancer using whole cystoscopy images. Methods: A randomized retrospective clinical trial was conducted using a total of 5670 cystoscopic images provided by three institutions, comprising 1890 images each (486 bladder cancer images and 1404 normal images). The images were randomly distributed into five sets (A–E), each containing 1890 photographs. INF-M01 analyzed the images in set A to evaluate sensitivity, specificity, and accuracy. Sets B to E were analyzed by INF-M01 and four urologists, who marked the suspected bladder tumors. The Dice coefficient was used to compare the ability to differentiate bladder tumors. Results: For set A, the sensitivity, specificity, accuracy, and 95% confidence intervals were 0.973 (0.955–0.984), 0.921 (0.906–0.934), and 0.934 (0.922–0.945), respectively. The mean value of the Dice coefficient of AI was 0.889 (0.873–0.927), while that of clinicians was 0.941 (0.903–0.963), indicating that AI showed a reliable ability to distinguish bladder tumors from normal bladder tissue. AI demonstrated a sensitivity similar to that of urologists (0.971 (0.971–0.983) vs. 0.921 (0.777–0.995)), but a lower specificity (0.920 (0.882–0.962) vs. 0.991 (0.984–0.996)) compared to the urologists. Conclusions: INF-M01 demonstrated satisfactory accuracy in the diagnosis of bladder tumors. Additionally, it displayed an ability to distinguish and mark tumor regions from normal bladder tissue, similar to that of urologists. These results suggest that AI has promising diagnostic capabilities and clinical utility for urologists. Full article
(This article belongs to the Section Nephrology & Urology)
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29 pages, 1204 KiB  
Review
Soil and Mineral Nutrients in Plant Health: A Prospective Study of Iron and Phosphorus in the Growth and Development of Plants
by Mujtaba Aamir Bhat, Awdhesh Kumar Mishra, Sheezma Nazir Shah, Mudasir Ahmad Bhat, Saima Jan, Safikur Rahman, Kwang-Hyun Baek and Arif Tasleem Jan
Curr. Issues Mol. Biol. 2024, 46(6), 5194-5222; https://doi.org/10.3390/cimb46060312 - 24 May 2024
Cited by 30 | Viewed by 5480
Abstract
Plants being sessile are exposed to different environmental challenges and consequent stresses associated with them. With the prerequisite of minerals for growth and development, they coordinate their mobilization from the soil through their roots. Phosphorus (P) and iron (Fe) are macro- and micronutrient; [...] Read more.
Plants being sessile are exposed to different environmental challenges and consequent stresses associated with them. With the prerequisite of minerals for growth and development, they coordinate their mobilization from the soil through their roots. Phosphorus (P) and iron (Fe) are macro- and micronutrient; P serves as an important component of biological macromolecules, besides driving major cellular processes, including photosynthesis and respiration, and Fe performs the function as a cofactor for enzymes of vital metabolic pathways. These minerals help in maintaining plant vigor via alterations in the pH, nutrient content, release of exudates at the root surface, changing dynamics of root microbial population, and modulation of the activity of redox enzymes. Despite this, their low solubility and relative immobilization in soil make them inaccessible for utilization by plants. Moreover, plants have evolved distinct mechanisms to cope with these stresses and coregulate the levels of minerals (Fe, P, etc.) toward the maintenance of homeostasis. The present study aims at examining the uptake mechanisms of Fe and P, and their translocation, storage, and role in executing different cellular processes in plants. It also summarizes the toxicological aspects of these minerals in terms of their effects on germination, nutrient uptake, plant–water relationship, and overall yield. Considered as an important and indispensable component of sustainable agriculture, a separate section covers the current knowledge on the cross-talk between Fe and P and integrates complete and balanced information of their effect on plant hormone levels. Full article
(This article belongs to the Special Issue Latest Review Papers in Molecular Biology 2024)
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23 pages, 7340 KiB  
Article
Characterization of Plant-Derived Natural Inhibitors of Dipeptidyl Peptidase-4 as Potential Antidiabetic Agents: A Computational Study
by Alomgir Hossain, Md Ekhtiar Rahman, Md Omar Faruqe, Ahmed Saif, Suzzada Suhi, Rashed Zaman, Abdurahman Hajinur Hirad, Mohammad Nurul Matin, Muhammad Fazle Rabbee and Kwang-Hyun Baek
Pharmaceutics 2024, 16(4), 483; https://doi.org/10.3390/pharmaceutics16040483 - 1 Apr 2024
Cited by 9 | Viewed by 4136
Abstract
Diabetes, characterized by elevated blood sugar levels, poses significant health and economic risks, correlating with complications like cardiovascular disease, kidney failure, and blindness. Dipeptidyl peptidase-4 (DPP-4), also referred to as T-cell activation antigen CD26 (EC 3.4.14.5.), plays a crucial role in glucose metabolism [...] Read more.
Diabetes, characterized by elevated blood sugar levels, poses significant health and economic risks, correlating with complications like cardiovascular disease, kidney failure, and blindness. Dipeptidyl peptidase-4 (DPP-4), also referred to as T-cell activation antigen CD26 (EC 3.4.14.5.), plays a crucial role in glucose metabolism and immune function. Inhibiting DPP-4 was anticipated as a potential new therapy for diabetes. Therefore, identification of plant-based natural inhibitors of DPP-4 would help in eradicating diabetes worldwide. Here, for the identification of the potential natural inhibitors of DPP-4, we developed a phytochemicals library consisting of over 6000 phytochemicals detected in 81 medicinal plants that exhibited anti-diabetic potency. The library has been docked against the target proteins, where isorhamnetin, Benzyl 5-Amino-5-deoxy-2,3-O-isopropyl-alpha-D-mannofuranoside (DTXSID90724586), and 5-Oxo-7-[4-(trifluoromethyl) phenyl]-4H,6H,7H-[1,2]thiazolo[4,5-b]pyridine 3-carboxylic acid (CHEMBL3446108) showed binding affinities of −8.5, −8.3, and −8.3 kcal/mol, respectively. These compounds exhibiting strong interactions with DPP-4 active sites (Glu205, Glu206, Tyr547, Trp629, Ser630, Tyr662, His740) were identified. ADME/T and bioactivity predictions affirmed their pharmacological safety. Density functional theory calculations assessed stability and reactivity, while molecular dynamics simulations demonstrated persistent stability. Analyzing parameters like RMSD, RG, RMSF, SASA, H-bonds, MM-PBSA, and FEL confirmed stable protein–ligand compound formation. Principal component analysis provided structural variation insights. Our findings suggest that those compounds might be possible candidates for developing novel inhibitors targeting DPP-4 for treating diabetes. Full article
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