Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

Article Types

Countries / Regions

Search Results (55)

Search Parameters:
Authors = Jixiang Liu

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
18 pages, 14557 KiB  
Article
A Full Chain of Applying Struvite Recovered from Biogas Slurry to Promote Vegetable Growth
by Yunhan Li, Wei Wang, Linhe Sun, Jian Cui, Xiaojing Liu, Jixiang Liu, Yajun Chang and Dongrui Yao
Agriculture 2025, 15(13), 1352; https://doi.org/10.3390/agriculture15131352 - 25 Jun 2025
Viewed by 344
Abstract
The expansion of the livestock industry has led to an increase in biogas slurry discharge, which contains high levels of nitrogen (N) and phosphorous (P). Struvite precipitation is an effective method for the recovery of N and P from biogas slurry, and the [...] Read more.
The expansion of the livestock industry has led to an increase in biogas slurry discharge, which contains high levels of nitrogen (N) and phosphorous (P). Struvite precipitation is an effective method for the recovery of N and P from biogas slurry, and the recovered N and P can be applied as a slow-release fertilizer in agricultural production. To form an industrial chain for struvite recovery and application in agriculture, we investigated the factors affecting struvite recovery from biogas slurry generated on a pig farm and evaluated its efficacy as a fertilizer. The N and P recovery efficiency was higher when magnesium chloride (MgCl2) was used as a magnesium (Mg) source compared with magnesium oxide (MgO), and the optimal reaction conditions were pH 10, a reaction time of 20 min, a stirring rate of 200 rpm, and a Mg/P/N ratio of 1.2:1.0:1.0, which achieved N and P recovery rates of 81.83% and 99.67%, respectively. To further investigate the commercial utility of using struvite recovered from biogas slurry as a fertilizer, the growth and content of nutrients in two common vegetables in China were measured. The vegetable quality-related parameters of bock choy (Brassica chinensis) improved as the proportion of struvite in the fertilizer increased. Fresh weight, soluble sugar, and soluble protein increased by 194.47%, 46.13%, and 82.42%, respectively. The quality-related parameters of water celery (Oenanthe javanica (Blume) DC.) increased with an increasing proportion of struvite (27.90 mg·g−1 soluble sugar and 42.20 mg·g−1 soluble protein). The application of struvite precipitated from biogas slurry in plant cultivation shows great potential and lays a solid foundation for the resourceful recovery and utilization of biogas slurry. Full article
(This article belongs to the Section Agricultural Soils)
Show Figures

Graphical abstract

21 pages, 2922 KiB  
Article
Gut Microbiota Contribute to Heterosis for Growth Trait and Muscle Nutrient Composition in Hybrid Largemouth Bass (Micropterus salmoides)
by Jixiang Hua, Qingchun Wang, Yifan Tao, Hui Sun, Siqi Lu, Yan Zhuge, Wenhua Chen, Kai Liu, Jie He and Jun Qiang
Microorganisms 2025, 13(7), 1449; https://doi.org/10.3390/microorganisms13071449 - 22 Jun 2025
Viewed by 438
Abstract
Crossbreeding often results in heterosis. In this study, we generated hybrids from largemouth bass from geographically isolated populations. Growth, digestive enzyme activity, and muscle nutrient composition were compared between the hybrid groups (NC and CN) and the purebred groups (NN and CC), and [...] Read more.
Crossbreeding often results in heterosis. In this study, we generated hybrids from largemouth bass from geographically isolated populations. Growth, digestive enzyme activity, and muscle nutrient composition were compared between the hybrid groups (NC and CN) and the purebred groups (NN and CC), and the gut microbiota was investigated. The heterosis rates of body length, body height, and body thickness in hybrid largemouth bass were statistically significant. Digestive enzyme activity was higher in the hybrid groups than in the purebred groups. Compared with the CN and CC groups, the NC group had significantly higher levels of essential amino acids and total amino acids in the muscle. The polyunsaturated fatty acid content was lower in the hybrid groups than in the purebred groups. The gut microbiota in the hybrid groups predominantly exhibited a non-additive inheritance pattern, characterized by a reduced abundance of Proteobacteria and an increased abundance of Fusobacteria. Microbial taxa showing differences in abundance between the hybrid and purebred groups harbored genes enriched in multiple amino acid and fatty acid metabolism pathways. Cetobacterium, Pseudomonas, and Stenotrophomonas were more abundant in the hybrids, and were positively correlated with multiple amino acids and fatty acids. These results highlight the critical role of gut microbiota in heterosis. Full article
(This article belongs to the Section Gut Microbiota)
Show Figures

Figure 1

16 pages, 5609 KiB  
Review
Research Progress in the Remediation of Arsenic- and Cadmium-Contaminated Groundwater Mediated by Iron and Manganese Biomineralization
by Feixing Li, Jixiang Cai, Xinxin Zhao, Hui Liu, Fanfan Ju and Youwen Li
Catalysts 2025, 15(6), 570; https://doi.org/10.3390/catal15060570 - 9 Jun 2025
Viewed by 1392
Abstract
Arsenic (As) and cadmium (Cd) contamination in groundwater poses significant risks to human health and environmental sustainability. Iron–manganese minerals and associated microorganisms in subsurface environments exhibit remarkable potential for immobilizing and transforming toxic metal(loid)s through adsorption, redox reactions, and co-precipitation. This study integrates [...] Read more.
Arsenic (As) and cadmium (Cd) contamination in groundwater poses significant risks to human health and environmental sustainability. Iron–manganese minerals and associated microorganisms in subsurface environments exhibit remarkable potential for immobilizing and transforming toxic metal(loid)s through adsorption, redox reactions, and co-precipitation. This study integrates bibliometric analysis with mechanistic review strategies to systematically evaluate the roles of iron–manganese biomineralization in As/Cd stabilization. Bibliometric insights identify emerging research trends, including the application of biogenic oxides and microbial redox cycles in groundwater remediation. Mechanistic analysis reveals how microbial–mineral interactions regulate As/Cd sequestration, emphasizing the influence of environmental factors such as pH, redox conditions, and microbial metabolic pathways. Case studies demonstrate the viability of in situ remediation technologies leveraging these biogeochemical processes, though challenges persist in achieving consistent field-scale performance and long-term stability. Future efforts should prioritize optimizing microbial consortia, advancing real-time monitoring systems, and integrating biogeochemical strategies with engineered barriers. By synthesizing quantitative trends and mechanistic principles, this work provides actionable frameworks for enhancing natural attenuation and designing sustainable remediation systems for metal-contaminated groundwater. Full article
Show Figures

Graphical abstract

19 pages, 3012 KiB  
Article
A Novel Brain-Targeting Nanoparticle Loaded with Biatractylolide and Its Protective Effect on Alzheimer’s Disease
by Qianmei Hu, Candi Liu, Jiawang Tan, Jixiang Wang, Hao Yang, Yi Liu, Haochu Mao, Zixuan Jiang, Xing Feng and Xiaojun Tao
Pharmaceuticals 2025, 18(6), 809; https://doi.org/10.3390/ph18060809 - 28 May 2025
Viewed by 596
Abstract
Background: To enhance the bioavailability and neuroprotective efficacy of biatractylolide against Alzheimer’s disease by developing a novel Tween-80-modified pullulan–chenodeoxycholic acid nanoparticle as a delivery vehicle. Methods: Chenodeoxycholic acid (CDCA) was chemically conjugated to pullulan to yield hydrophobically modified pullulan (PUC), onto which [...] Read more.
Background: To enhance the bioavailability and neuroprotective efficacy of biatractylolide against Alzheimer’s disease by developing a novel Tween-80-modified pullulan–chenodeoxycholic acid nanoparticle as a delivery vehicle. Methods: Chenodeoxycholic acid (CDCA) was chemically conjugated to pullulan to yield hydrophobically modified pullulan (PUC), onto which polysorbate 80 (Tween-80) was subsequently adsorbed. The PUC polymers with CDCA substitution levels were analyzed by 1H NMR spectroscopy. Nanoparticles were fabricated via the dialysis method and characterized by transmission electron microscopy and dynamic light scattering for morphology, size, and surface charge. In vitro neuroprotection was assessed by exposing SH-SY5Y and PC12 cells to 20 µM Aβ25-35 to induce cytotoxicity, followed by pretreatment with biatractylolide-loaded PUC (BD-PUC) nanoparticle solutions at various biatractylolide concentrations. The in vivo brain-targeting capability of both empty PUC and BD-PUC particles was evaluated using a live imaging system. Results: The 1H NMR analysis confirmed three distinct CDCA substitution degrees (8.97%, 10.66%, 13.92%). Transmission electron microscopy revealed uniformly dispersed, spherical nanoparticles. Dynamic light scattering measurements showed a hydrodynamic diameter of ~200 nm and a negative zeta potential. Exposure to 20 µM Aβ25-35 significantly reduced SH-SY5Y and PC12 cell viability; pretreatment with BD-PUC nanoparticles markedly enhanced cell survival rates and preserved cellular morphology compared to cells treated with free biatractylolide. Notably, the cytoprotective effect of BD-PUC exceeded that of the free drug. In vivo imaging demonstrated that both empty PUC and Tween-80-adsorbed BD-PUC nanoparticles effectively accumulated in the brain. Conclusions: The protective effect of BD-PUC on SH-SY5Y and PC12 cells induced by Aβ25-35 was higher than free biatractylolide solution, and the BD-PUC nanosolution modified with Tween-80 showed a brain-targeting effect. Full article
(This article belongs to the Special Issue Natural Products for Therapeutic Potential)
Show Figures

Figure 1

19 pages, 4798 KiB  
Article
Distribution, Potential Sources, and Risks of Heavy Metal Contamination in the Huaihe River: Insights from Water and Sediment Analysis
by Yuqing Miao, Jixiang Gu, Zhijie Gao, Jiejie Lyu, Fanghu Sun, Chuansheng Wu, Xun Liu, Weilin Hong, Yuesheng Lin, Hao Wang, Zichen Chen, Sixu Zhang, Qikai Hu and Xiaocao Sha
Sustainability 2025, 17(8), 3548; https://doi.org/10.3390/su17083548 - 15 Apr 2025
Viewed by 613
Abstract
Riverine heavy metal (HM) pollution, a critical global environmental issue, severely affects water quality, ecosystem health, and human well-being. The Huaihe River, once among China’s most polluted, has seen water quality improvements due to strict pollution controls, yet the extent of HM pollution [...] Read more.
Riverine heavy metal (HM) pollution, a critical global environmental issue, severely affects water quality, ecosystem health, and human well-being. The Huaihe River, once among China’s most polluted, has seen water quality improvements due to strict pollution controls, yet the extent of HM pollution reduction remains uncertain. Here, we investigated the distribution, sources, and potential ecological and health risks of nine typical HMs (Cr, Mn, Ni, Cu, Zn, As, Cd, Pb, and Hg) in surface water and sediment in the Anhui section of the river. Seasonal variations in HM concentrations were observed, with most values below drinking water safety limits, except for Mn and Cd at specific sites and seasons. Indices including the HPI, HEI, HQ, and HI showed low contamination and health risks, yet children are more vulnerable to non-carcinogenic hazards, notably from Cd and As. Sediment HMs trends decreased as Mn > Zn > Cr > Pb > Ni > Cu > As > Cd > Hg, with moderate pollution from Cd, Mn, and Pb based on CF, EF, and Igeo assessments. PLI and NPI suggested moderate ecological risks in midstream areas due to HM accumulation. The correlation analysis and PCA revealed that HMs in uncontaminated sediments were mainly of geogenic origin, while contaminated sediments were largely influenced by anthropogenic activities, including agricultural runoff, industrial waste, and domestic sewage discharge. Overall, our findings highlight that control of anthropogenic activities within the Huaihe River basin is essential for reducing HM pollution in the river. Full article
Show Figures

Figure 1

16 pages, 6444 KiB  
Article
Complete Chloroplast Genome Sequences of Three Canna Species: Genome Characterization, Comparative Analyses, and Phylogenetic Relationships Within Zingiberales
by Linhe Sun, Jixiang Liu, Fangyu Liu, Wei Wang, Yajun Chang and Dongrui Yao
Curr. Issues Mol. Biol. 2025, 47(4), 222; https://doi.org/10.3390/cimb47040222 - 25 Mar 2025
Viewed by 491
Abstract
Canna, the sole member of the Cannaceae family, is widely cultivated as an ornamental plant for its decorative flowers and foliage and is also a potential tuber crop due to its high starch content. This study sequenced, assembled, and analyzed the complete [...] Read more.
Canna, the sole member of the Cannaceae family, is widely cultivated as an ornamental plant for its decorative flowers and foliage and is also a potential tuber crop due to its high starch content. This study sequenced, assembled, and analyzed the complete chloroplast (cp) genomes of three common Canna species with distinct leaf colors (green, purple, and variegated). The four cp genomes ranged from 164,427 to 164,509 bp in length, had a GC content of 36.23–36.25%, and exhibited identical gene content and codon preferences. Each genome contained 130 genes, including 110 unique genes (78 protein-coding genes, four of unknown function, four rRNAs, and 28 tRNAs), 18 duplicated genes located in the IR regions (six protein-coding genes, two of unknown function, four rRNAs, and eight tRNAs), and two trnM-CAU genes in the LSC region. SSR and long-repeat showed differences in long repeats numbers and distributions among the four cp genomes, highlighting potential molecular markers for Canna species identification and breeding. Comparative analysis showed high conservation across Canna cp genomes. Phylogenetic analysis confirmed a close relationship between Cannaceae and Marantaceae and supported a [Musaeceae (Cannaceae + Marantaceae)] clade as a sister group to Costaceae. The cp genome data generated in this study provide valuable insights for developing molecular markers, resolving taxonomic classifications, and advancing phylogenetic and population genetic studies in Canna species. Full article
(This article belongs to the Section Molecular Plant Sciences)
Show Figures

Figure 1

18 pages, 3106 KiB  
Article
The Manufacturing Process of Lotus (Nelumbo Nucifera) Leaf Black Tea and Its Microbial Diversity Analysis
by Xiaojing Gao, Xuhui Kan, Fengfeng Du, Linhe Sun, Xixi Li, Jixiang Liu, Xiaojing Liu and Dongrui Yao
Foods 2025, 14(3), 519; https://doi.org/10.3390/foods14030519 - 6 Feb 2025
Cited by 1 | Viewed by 1363
Abstract
Lotus leaves combine both edible and medicinal properties and are rich in nutrients and bioactive compounds. In this study, the lotus leaf tea was prepared using a black tea fermentation process, and the functional components and microbial changes during fermentation were investigated. The [...] Read more.
Lotus leaves combine both edible and medicinal properties and are rich in nutrients and bioactive compounds. In this study, the lotus leaf tea was prepared using a black tea fermentation process, and the functional components and microbial changes during fermentation were investigated. The results indicated that the activity of polyphenol oxidase showed an initial rise followed by a decline as fermentation progressed, peaked at 3 h with 1.07 enzyme activity units during fermentation. The lotus leaf fermented tea has high levels of soluble sugars (20.92 ± 0.53 mg/g), total flavonoids (1.59 ± 0.05 mg GAE/g), and total polyphenols (41.34 ± 0.87 mg RE/g). Its antioxidant activity was evaluated using ABTS, DPPH, and hydroxyl radical scavenging assays, with results of 18.90 ± 1.02 mg Vc/g, 47.62 ± 0.51 mg Vc/g, and 17.58 ± 1.06 mg Vc/g, respectively. The microbial community also shifted during fermentation. Fusarium played a significant role during the fermentation process. This study demonstrated that the black tea fermentation process improved the functional components and biological activity of lotus leaf tea by optimizing the synergistic effect of enzymatic oxidation and microbial fermentation. The findings not only realized the comprehensive utilization of lotus leaf resources but also provided a foundation for developing innovative functional beverages with enhanced bioactive properties. Full article
(This article belongs to the Section Food Analytical Methods)
Show Figures

Figure 1

26 pages, 5245 KiB  
Article
An Imaging Method for Marine Targets in Corner Reflector Jamming Scenario Based on Time–Frequency Analysis and Modified Clean Technique
by Changhong Chen, Wenkang Liu, Yuexin Gao, Lei Cui, Quan Chen, Jixiang Fu and Mengdao Xing
Remote Sens. 2025, 17(2), 310; https://doi.org/10.3390/rs17020310 - 16 Jan 2025
Viewed by 815
Abstract
In the corner reflector jamming scenario, the ship target and the corner reflector array have different degrees of defocusing in the synthetic aperture radar (SAR) image due to their complex motions, which is unfavorable to the subsequent target recognition. In this manuscript, we [...] Read more.
In the corner reflector jamming scenario, the ship target and the corner reflector array have different degrees of defocusing in the synthetic aperture radar (SAR) image due to their complex motions, which is unfavorable to the subsequent target recognition. In this manuscript, we propose an imaging method for marine targets based on time–frequency analysis with the modified Clean technique. Firstly, the motion models of the ship target and the corner reflector array are established, and the characteristics of their Doppler parameter distribution are analyzed. Then, the Chirp Rate–Quadratic Chirp Rate Distribution (CR-QCRD) algorithm is utilized to estimate the Doppler parameters. To address the challenges posed by the aggregated scattering points of the ship target and the overlapping Doppler histories of the corner reflector array, the Clean technique is modified by short-time Fourier transform (STFT) filtering and amplitude–phase distortion correction using fractional Fourier transform (FrFT) filtering. This modification aims to improve the accuracy and efficiency of extracting scattering point components. Thirdly, in response to the poor universality of the traditional Clean iterative termination condition, the kurtosis of the residual signal spectrum amplitude is adopted as the new iterative termination condition. Compared with the existing imaging methods, the proposed method can adapt to the different Doppler distribution characteristics of the ship target and the corner reflector array, thus realizing better robustness in obtaining a well-focused target image. Finally, simulation experiments verify the effectiveness of the algorithm. Full article
Show Figures

Figure 1

19 pages, 2920 KiB  
Article
GsEXPA8 Enhances Soybean Tolerance of NaHCO3 Stress by Regulating Root Morphology
by Mengyu Liu, Jixiang Tang, Shengjie Ma, Yujing Liu, Xiaoyu Wang, Xinlei Du, Xiaohuan Sun, Yucheng Zeng, Yulong Zeng, Xiaodong Ding, Yingpeng Han, Junfeng Zhang and Lei Cao
Agronomy 2025, 15(1), 16; https://doi.org/10.3390/agronomy15010016 - 26 Dec 2024
Viewed by 961
Abstract
Saline–alkali environments restrict soybean production in China. Wild soybean genes can be used to improve the alkaline tolerance of cultivated soybean in molecular breeding. The expansin protein family promotes cell wall expansion. In this study, the relative expression levels of expansin family genes [...] Read more.
Saline–alkali environments restrict soybean production in China. Wild soybean genes can be used to improve the alkaline tolerance of cultivated soybean in molecular breeding. The expansin protein family promotes cell wall expansion. In this study, the relative expression levels of expansin family genes in wild soybean treated with 50 mM NaHCO3 were measured at 0, 3, 6, and 12 h, and the relative expression of GsEXPA8 was found to be higher at 12 h. Wild soybean was treated with abscisic acid (ABA), indole-3-acetic acid (IAA), gibberellic acid (GA), and jasmonic acid (JA), and GsEXPA8 was found to respond to ABA and IAA signals. Sequence analysis shows that GsEXPA8 has DPBB_EXPA and expansin domains. Subcellular localization analysis shows that GsEXPA8 was localized in the cytoplasm in protoplasts and the cell membrane or wall in tobacco, indicating that it has nuclear membrane localization signals. GsEXPA8 overexpression reduced the malondialdehyde content in transgenic plants treated with NaHCO3 and increased peroxidase activity before treatment. After the transformation of soybean roots from hair roots, GsEXPA8 was found to be expressed in the outer root cells and promote the development of thicker, shorter roots, thereby improving the plant’s alkaline tolerance. Stable GsEXPA8 transformation improved saline alkaline tolerance via the regulation of the alkali stress-related genes GmKIN1, GmRD22, GmDnaJA6, GmNFYC1, and GmMYB14. These findings provide support for further research on alkali-tolerance regulation pathways and molecular breeding for alkali tolerance. Full article
(This article belongs to the Section Plant-Crop Biology and Biochemistry)
Show Figures

Figure 1

22 pages, 25790 KiB  
Article
3D Hydrogeological Structure Modeling Based on Quantitative Correlation and Identification of Aquifer Types Within Stratigraphic Layers
by Jixiang Zhu, Tao Gan, Shunchang Liu, Xiaoyuan Zhou, Lizhong Zhang and Zhibin Huo
Water 2024, 16(22), 3271; https://doi.org/10.3390/w16223271 - 14 Nov 2024
Viewed by 1153
Abstract
Due to the scarcity and uneven distribution of data, as well as the complexity of geological conditions, high-precision 3D hydrogeological structure modeling, especially at large scales, remains a significant challenge in the field. To address this issue, this study undertakes an in-depth analysis [...] Read more.
Due to the scarcity and uneven distribution of data, as well as the complexity of geological conditions, high-precision 3D hydrogeological structure modeling, especially at large scales, remains a significant challenge in the field. To address this issue, this study undertakes an in-depth analysis of the correlation between stratigraphic and hydrogeological structures. Utilizing the cumulative thickness of various aquifer types as a criterion, we establish a quantitative correlation model between stratigraphic and hydrogeological structures. This innovative approach transforms the task of 3D hydrogeological structure modeling into 3D geological structure modeling, where data are relatively abundant, thereby overcoming the data scarcity problem. To demonstrate the scientificity and feasibility of our approach, we utilize the 3D hydrogeological structures modeling of Wuhan’s metropolitan development area (MDA) as a case study. This study provides a quantitative criterion for the correlation between stratigraphic and hydrogeological structures, addressing the subjectivity and arbitrariness of previous qualitative evaluations. Additionally, it offers a scientific solution to the data scarcity issue commonly encountered in 3D hydrogeological structure modeling. Consequently, this study holds significant scientific value and practical implications. Full article
(This article belongs to the Section Hydrogeology)
Show Figures

Figure 1

14 pages, 4911 KiB  
Article
Individual Importance Classification of Urban Stormwater Channel Networks: A Novel Approach Based on Permutation and Algebraic Graph Theory
by Zhicheng Zhong, Jixiang Wan, Hao Bu, Zheng Gao, Tingting Liu, Fusheng Wang, Qianyu Shao, Xinyue Qiu, Liang Wang and Jilin Cheng
Water 2024, 16(22), 3242; https://doi.org/10.3390/w16223242 - 11 Nov 2024
Viewed by 910
Abstract
The frequency and intensity of urban flooding continuously increase due to the dual influences of climate change and urbanization. Conducting individual importance classification of urban stormwater channel networks (USCNs) is of significant importance for alleviating urban flooding and facilitating targeted stormwater management implementation. [...] Read more.
The frequency and intensity of urban flooding continuously increase due to the dual influences of climate change and urbanization. Conducting individual importance classification of urban stormwater channel networks (USCNs) is of significant importance for alleviating urban flooding and facilitating targeted stormwater management implementation. However, a quantitative classification method is lacking for trellis networks, which are a common type of USCN. This study proposed a novel importance classification methodology for channel segments in most types of USCNs, especially suitable for trellis networks, based on permutation and algebraic graph theory. The concept of permutation was integrated into the methodology to measure the importance of each channel segment to the USCN. Algebraic graph theory was employed to quantify the topological structure and hydraulic characteristics of the USCN. To verify the applicability and rationality of the proposed methodology, a real-world city with trellis USCNs in China (i.e., Huai’an) was selected as the study area. Seventy channel segments in the USCN were efficiently classified into three categories based on individual importance. This study provided a decision-support methodology from the perspective of individual importance classification in the USCN and offered valuable reference for urban flooding managers. Full article
Show Figures

Figure 1

17 pages, 8313 KiB  
Article
Exposure to High Concentrations of Tetrabromobisphenol A Slows the Process of Tissue Regeneration and Induces an Imbalance of Metabolic Homeostasis in the Regenerated Intestines of Apostichopus japonicus
by Zi Wang, Xiaojun Song, Wenhui Yin, Kuntao Shi, Ying Lin, Jixiang Liu, Xiaohan Li, Jiabo Tan, Junjie Rong, Kefeng Xu and Guodong Wang
Genes 2024, 15(11), 1448; https://doi.org/10.3390/genes15111448 - 9 Nov 2024
Cited by 1 | Viewed by 1194
Abstract
Background: Tissue regenerative capacity following evisceration, potentially influenced by environmental contaminants and intestinal microflora, is essential for the financial success of Apostichopus japonicus farming. However, the morphological structure, gut microbiome composition, and genes expression pattern of the regenerated gut after exposure to high [...] Read more.
Background: Tissue regenerative capacity following evisceration, potentially influenced by environmental contaminants and intestinal microflora, is essential for the financial success of Apostichopus japonicus farming. However, the morphological structure, gut microbiome composition, and genes expression pattern of the regenerated gut after exposure to high levels of TBBPA remain poorly unclear. Methods: In this research, the effect of TBBPA exposure on tissue regeneration in A. japonicus was investigated through a comprehensive multi-omics approach. Results: Our results showed that the integrity, the intestinal wall thickness, and the villi length of the regenerated intestines in A. japonicus decreased after treatment with high levels of TBBPA. The findings from PCoA and NMDS analyses revealed that the microbial community composition was significantly altered following exposure to high concentrations of TBBPA in the regenerated intestines of A. japonicus. The KEGG pathway enrichment analysis indicated that the DEGs (differentially expressed genes) were predominantly enriched on metabolism and immunity-related signaling pathways after exposure to high levels of TBBPA. These included pathways involved in the PPAR signaling pathway, ECM receptor interaction, glycerolipid metabolism, and fatty acid degradation. Interestingly, the results have demonstrated that there are 77 transcript factors that were significantly different after exposure to TBBPA. Conclusions: These results suggested that high levels of exposure to TBBPA induces an imbalance of the metabolic homeostasis by regulating the expression levels of transcription factors in the regenerated intestines of A. japonicus. Full article
(This article belongs to the Special Issue Molecular Biology and Genetics in Aquaculture)
Show Figures

Figure 1

23 pages, 7024 KiB  
Article
A Multi-Spatial Scale Ocean Sound Speed Prediction Method Based on Deep Learning
by Yu Liu, Benjun Ma, Zhiliang Qin, Cheng Wang, Chao Guo, Siyu Yang, Jixiang Zhao, Yimeng Cai and Mingzhe Li
J. Mar. Sci. Eng. 2024, 12(11), 1943; https://doi.org/10.3390/jmse12111943 - 31 Oct 2024
Viewed by 1268
Abstract
As sound speed is a fundamental parameter of ocean acoustic characteristics, its prediction is a central focus of underwater acoustics research. Traditional numerical and statistical forecasting methods often exhibit suboptimal performance under complex conditions, whereas deep learning approaches demonstrate promising results. However, these [...] Read more.
As sound speed is a fundamental parameter of ocean acoustic characteristics, its prediction is a central focus of underwater acoustics research. Traditional numerical and statistical forecasting methods often exhibit suboptimal performance under complex conditions, whereas deep learning approaches demonstrate promising results. However, these methodologies fall short in adequately addressing multi-spatial coupling effects and spatiotemporal weighting, particularly in scenarios characterized by limited data availability. To investigate the interactions across multiple spatial scales and to achieve accurate predictions, we propose the STA-ConvLSTM framework that integrates spatiotemporal attention mechanisms with convolutional long short-term memory neural networks (ConvLSTM). The core concept involves accounting for the coupling effects among various spatial scales while extracting temporal and spatial information from the data and assigning appropriate weights to different spatiotemporal entities. Furthermore, we introduce an interpolation method for ocean temperature and salinity data based on the KNN algorithm to enhance dataset resolution. Experimental results indicate that STA-ConvLSTM provides precise predictions of sound speed. Specifically, relative to the measured data, it achieved a root mean square error (RMSE) of approximately 0.57 m/s and a mean absolute error (MAE) of about 0.29 m/s. Additionally, when compared to single-dimensional spatial analysis, incorporating multi-spatial scale considerations yielded superior predictive performance. Full article
(This article belongs to the Special Issue Machine Learning Methodologies and Ocean Science)
Show Figures

Figure 1

23 pages, 4354 KiB  
Article
Dietary Fiber-Derived Butyrate Alleviates Piglet Weaning Stress by Modulating the TLR4/MyD88/NF-κB Pathway
by Weikang Huangfu, Jixiang Ma, Yan Zhang, Mengqi Liu, Boshuai Liu, Jiangchao Zhao, Zhichang Wang and Yinghua Shi
Nutrients 2024, 16(11), 1714; https://doi.org/10.3390/nu16111714 - 30 May 2024
Cited by 10 | Viewed by 2055
Abstract
During weaning, piglets are susceptible to intestinal inflammation and impairment in barrier function. Dietary fiber (DF) plays an active role in alleviating weaning stress in piglets. However, the effects of different sources of dietary fiber on the performance of weaned piglets are inconsistent, [...] Read more.
During weaning, piglets are susceptible to intestinal inflammation and impairment in barrier function. Dietary fiber (DF) plays an active role in alleviating weaning stress in piglets. However, the effects of different sources of dietary fiber on the performance of weaned piglets are inconsistent, and the mechanisms through which they affect intestinal health need to be explored. Therefore, in this study, sixty weaned piglets were randomly divided into three treatment groups: basal diet (control, CON), beet pulp (BP), and alfalfa meal (AM) according to the feed formulation for a 28-day trial. The results showed that both AM and BP groups significantly reduced diarrhea rate and serum inflammatory factors (IL-1β and TNF-α) and increased antioxidant markers (T-AOC and SOD), in addition to decreasing serum MDA and ROS concentrations in the AM group. At the same time, piglets in the AM group showed a significant reduction in serum intestinal permeability indices (LPS and DAO) and a substantial increase in serum immunoglobulin levels (IgA, IgG, and IgM) and expression of intestinal barrier-associated genes (Claudin1, Occludin, ZO-1, and MUC1), which resulted in an improved growth performance. Interestingly, the effect of DF on intestinal inflammation and barrier function can be attributed to its modulation of gut microbes. Fiber-degrading bacteria enriched in the AM group (Christensenellaceae_R-7_group, Pediococcus and Weissella) inhibited the production of TLR4- through the promotion of SCFAs (especially butyrate). MyD88-NF-κB signaling pathway activation reduces intestinal inflammation and repairs intestinal barrier function. In conclusion, it may provide some theoretical support and rationale for AM to alleviate weaning stress and improve early intestinal dysfunction, which may have implications for human infants. Full article
(This article belongs to the Special Issue Dietary Fiber, Gut Microbiota and Metabolic Disorder)
Show Figures

Figure 1

18 pages, 4535 KiB  
Article
The Autophagy-Related Protein ATG8 Orchestrates Asexual Development and AFB1 Biosynthesis in Aspergillus flavus
by Qingru Geng, Jixiang Hu, Pingzhi Xu, Tongzheng Sun, Han Qiu, Shan Wang, Fengqin Song, Ling Shen, Yongxin Li, Man Liu, Xue Peng, Jun Tian and Kunlong Yang
J. Fungi 2024, 10(5), 349; https://doi.org/10.3390/jof10050349 - 13 May 2024
Cited by 1 | Viewed by 1963
Abstract
Autophagy, a conserved cellular recycling process, plays a crucial role in maintaining homeostasis under stress conditions. It also regulates the development and virulence of numerous filamentous fungi. In this study, we investigated the specific function of ATG8, a reliable autophagic marker, in the [...] Read more.
Autophagy, a conserved cellular recycling process, plays a crucial role in maintaining homeostasis under stress conditions. It also regulates the development and virulence of numerous filamentous fungi. In this study, we investigated the specific function of ATG8, a reliable autophagic marker, in the opportunistic pathogen Aspergillus flavus. To investigate the role of atg8 in A. flavus, the deletion and complemented mutants of atg8 were generated according to the homologous recombination principle. Deletion of atg8 showed a significant decrease in conidiation, spore germination, and sclerotia formation compared to the WT and atg8C strains. Additionally, aflatoxin production was found severely impaired in the ∆atg8 mutant. The stress assays demonstrated that ATG8 was important for A. flavus response to oxidative stress. The fluorescence microscopy showed increased levels of reactive oxygen species in the ∆atg8 mutant cells, and the transcriptional result also indicated that genes related to the antioxidant system were significantly reduced in the ∆atg8 mutant. We further found that ATG8 participated in regulating the pathogenicity of A. flavus on crop seeds. These results revealed the biological role of ATG8 in A. flavus, which might provide a potential target for the control of A. flavus and AFB1 biosynthesis. Full article
Show Figures

Figure 1

Back to TopTop