Search Results (13)

Background: Adult Changes in Thought (ACT), a prospective cohort study, enrolls older adult members of Kaiser Permanente Washington. We describe an ambitious project to abstract medical records facilitating epidemiological investigation. Methods: Abstracted data include medications; laboratory results; women’s health; blood pressure; physical injuries; cardiovascular, neurological, psychiatric and other medical conditions. Results: Of 1419 of 5763 participants with completed abstractions, 1387 (97.7%) were deceased; 602 (42.4%) were diagnosed with Alzheimer’s Disease and Related Dementias; 985 (69.4%) had a brain autopsy. Each participant had an average of 34.3 (SD = 13.4) years of data abstracted. Over 64% had pharmacy data preceding 1977; 87.5% had laboratory data preceding 1988. Stroke, anxiety, depression and confusion during hospitalization were common among participants diagnosed with dementia. Conclusions: Medical records are transformed into data for analyses with outcomes derived from other ACT data. We provide detailed, unparalleled longitudinal clinical data to support a variety of epidemiological research on clinical-pathological correlations. Full article

The turfgrass industry supports golf courses, sports fields, and the landscaping and lawn care industries worldwide. Identifying the problem spots in turfgrass is crucial for targeted remediation for turfgrass treatment. There have been attempts to create vehicle- or drone-based scanners to predict turfgrass quality; however, these methods often have issues associated with high costs and/or a lack of accuracy due to using colour rather than grass height (R² = 0.30 to 0.90). The new vehicle-mounted turfgrass scanner system developed in this study allows for faster data collection and a more accurate representation of turfgrass quality compared to currently available methods while being affordable and reliable. The Gryphon Turf Canopy Scanner (GTCS), a low-cost one-dimensional LiDAR array, was used to scan turfgrass and provide information about grass height, density, and homogeneity. Tests were carried out over three months in 2021, with ground-truthing taken during the same period. When utilizing non-linear regression, the system could predict the percent bare of a field (R² = 0.47, root mean square error < 0.5 mm) with an increase in accuracy of 8% compared to the random forest metric. The potential environmental impact of this technology is vast, as a more targeted approach to remediation would reduce water, fertilizer, and herbicide usage. Full article

Despite remarkable progress, a cure for HIV-1 infection remains elusive. Rebound competent latent and transcriptionally active reservoir cells persevere despite antiretroviral therapy and rekindle infection due to inefficient proviral silencing. We propose a novel “block-lock-stop” approach, entailing long term durable silencing of viral expression towards an irreversible transcriptionally inactive latent provirus to achieve long term antiretroviral free control of the virus. A graded transformation of remnant HIV-1 in PLWH from persistent into silent to permanently defective proviruses is proposed, emulating and accelerating the natural path that human endogenous retroviruses (HERVs) take over millions of years. This hypothesis was based on research into delineating the mechanisms of HIV-1 latency, lessons from latency reversing agents and advances of Tat inhibitors, as well as expertise in the biology of HERVs. Insights from elite controllers and the availability of advanced genome engineering technologies for the direct excision of remnant virus set the stage for a rapid path to an HIV-1 cure. Full article

Evaluating the effectiveness of fertilizers on crops without traditional yield is difficult, as clipping collection is time-consuming and not indicative of the desired response to the fertilizer. Remote sensing techniques, like the normalized difference vegetation index (NDVI), have emerged as an effective tool to combat these issues. Canopy reflectance, measured by NDVI, is commonly used to differentiate turfgrass response to nitrogen (N) fertilization treatments; however, advancements in data processing are needed for greater differentiation between treatments and better testing of the effects of fertilizer responses. Presented here is an advancement in the processing of NDVI data by applying a compound exponential (pulse peak) function to changes in NDVI over time, relative to a control. This method’s effectiveness in differentiating between fertilizers was evaluated by applying polymer-coated urea (PCU), an enhanced efficiency fertilizer (EEF), and urea on turfgrass to show the usefulness of the novel curve fitting in highlighting differences in fertilizer response. The field study was carried out on an established Kentucky bluegrass (Poa pratensis L.) blend on a sandy loam soil rootzone maintained with a typical home lawn maintenance regime. Ratios of PCU to urea ranging from 100% urea to 100% PCU with increments of 20% of PCU were used to observe a continuum of response between the two fertilizer types. The N rate for all blends was 73 kg ha⁻¹, with unfertilized plots used as a control to set baseline measurements for the curve fitting. Turfgrass response to N fertilization treatments was assessed through visual turfgrass quality ratings, dry matter yield, and canopy reflectance, where higher urea content resulted in the shortest time to maximum ∆NDVI (24 days), while 100% EEF reached maximum ∆NDVI at 56 days. The novel curve fitting analysis of the NDVI data allowed for differentiation between treatments, provided a measure of fertilizer effects, and differentiated between urea and enhanced efficiency fertilizers. Full article

The urgency of addressing the climate crisis has heightened the need to make sustainable decisions. Universities and research institutions are uniquely able to help develop and disseminate useful information for industry, specifically small and medium enterprises. This case study examines the collaboration between the Guelph Turfgrass Institute (GTI) and the turfgrass industry that culminated in the creation of a “Turf Net Present Value Model”. This model enables turfgrass installers, managers, and local municipalities to determine the structure of their turfgrass systems, natural or artificial, and estimate the net present value (NPV) over an extended period. A conceptual model for effective industry-university collaboration is then used to evaluate the knowledge transfer between academia and industry, showcasing a knowledge-transfer framework for improved decision-making and sustainability in sports facilities. Full article

Alcohol abuse is a significant public health problem. While considerable research has shown that alcohol use affects sleep, little is known about the role of sleep deprivation in alcohol toxicity. We investigated sleep as a factor modulating alcohol toxicity using Drosophila melanogaster, a model for studies of sleep, alcohol, and aging. Following 24 h of sleep deprivation using a paradigm that similarly affects males and females and induces rebound sleep, flies were given binge-like alcohol exposures. Sleep deprivation increased mortality, with no sex-dependent differences. Sleep deprivation also abolished functional tolerance measured at 24 h after the initial alcohol exposure, although there was no effect on alcohol absorbance or clearance. We investigated the effect of chronic sleep deprivation using mutants with decreased sleep, insomniac and insulin-like peptide 2, finding increased alcohol mortality. Furthermore, we investigated whether pharmacologically inducing sleep prior to alcohol exposure using the GABA_A-receptor agonist 4,5,6,7-tetrahydroisoxazolo(5,4-c)pyridin-3-ol (THIP) mitigated the effects of alcohol toxicity on middle-aged flies, flies with environmentally disrupted circadian clocks, and flies with short sleep. Pharmacologically increasing sleep prior to alcohol exposure decreased alcohol-induced mortality. Thus, sleep prior to binge-like alcohol exposure affects alcohol-induced mortality, even in vulnerable groups such as aging flies and those with circadian dysfunction. Full article

The presence of urban plants in an ecosystem are vital for processes including carbon sequestration and the type of urban plants included in urban settings affect the amount of carbon sequestered. The objective of this study is to assess the ability of urban plants to sequester carbon under a number of available management practices through the development and refinement of an accessible carbon calculator. Available urban plant data were analyzed using the calculator developed using available literature regarding carbon sequestration to determine differences between different types of plants, when hidden carbon costs (HCC) were considered. Carbon sequestration including HCC for turfgrasses could be calculated but there was a lack of information regarding HCC of urban trees and shrubs. The calculator was shown to be an effective tool for homeowners to determine viable management practices to maintain or increase carbon sequestration. Full article

Vineyard exposure to wildfire smoke can taint grapes and wine. To understand the impact of this taint, it is imperative that the analytical methods used are accurate and precise. This study compared the variance across nine commercial and research laboratories following quantitative analysis of the same set of smoke-tainted wines. In parallel, correlations between the interlaboratory consensus values for smoke-taint markers and sensory analyses of the same smoke-tainted wines were evaluated. For free guaiacol, the mean accuracy was 94 ± 11% in model wine, while the free cresols and 4-methylguaiacol showed a negative bias and/or decreased precision relative to guaiacol. Similar trends were observed in smoke-tainted wines, with the cresols and glycosidically bound markers demonstrating high variance. Collectively, the interlaboratory results show that data from a single laboratory can be used quantitatively to understand smoke-taint. Results from different laboratories, however, should not be directly compared due to the high variance between study participants. Correlations between consensus compositional data and sensory evaluations suggest the risk of perceivable smoke-taint can be predicted from free cresol concentrations, overcoming limitations associated with the occurrence of some volatile phenols, guaiacol in particular, as natural constituents of some grape cultivars and of the oak used for barrel maturation. Full article

When wine grapes are exposed to smoke, there is a risk that the resulting wines may possess smoky, ashy, or burnt aromas, a wine flaw known as smoke taint. Smoke taint occurs when the volatile phenols (VPs) largely responsible for the aroma of smoke are transformed in grape into a range of glycosides that are imperceptible by smell. The majority of VP-glycosides described to date are disaccharides possessing a reducing β-d-glucopyranosyl moiety. Here, a two-part experiment was performed to (1) assess the stability of 11 synthesized VP-glycosides towards general acid-catalyzed hydrolysis during aging, and (2) to examine whether yeast strains differed in their capacity to produce free VPs both from these model glycosides as well as from grapes that had been deliberately exposed to smoke. When fortified into both model and real wine matrices at 200 ng/g, all VP-disaccharides were stable over 12 weeks, while (42–50 ng/g) increases in free 4-ethylphenol and p-cresol were detected when these were added to wine as their monoglucosides. Guaiacol and phenol were the most abundantly produced VPs during fermentation, whether originating from natural VP-precursors in smoked-exposed Pinot Noir must, or due to fortification with synthetic VP-glycosides. Significant yeast strain-specific differences in glycolytic activities were observed for phenyl-β-d-glycopyranoside, with two strains (RC212 and BM45) being unable to hydrolyze this model VP, albeit both were active on the guaiacyl analogue. Thus, differences in Saccharomyces cerevisiae β-glucosidase activity appear to be influenced by the VP moiety. Full article

Cable tensile forces in winch-assist harvesting have been investigated in order to assess the safety concerns of the technology. However, the literature is lacking, particularly in regards to the impact of winch design. In this study, a Summit Winch Assist tethering a feller-director on ground slopes up to 77% was monitored for four days. The cable tensile forces were simultaneously recorded at the harvesting and anchor machine at a frequency of 100 Hz. Cameras and GNSS devices enabled a time study of the operations and the recording of machine positions. Winch functionality and design were disclosed by the manufacturer and used for the interpretation of the results. The cable tensile forces reached 296 kN at the harvesting machine and 260 kN at the anchor machine. The slow negotiation of obstacles while moving downhill recorded the highest peaks, mainly due to threshold settings of the winch in the brake system activation. Lower but significant peaks were also recorded during stationary work tasks. The peaks, however, were limited to a few events and never exceeded the endurance limit of the cable. Overall, the study confirmed recent findings in cable tensile force analysis of active winch-assist operations and provided evidence of the underlaying mechanisms that contribute to cable tensile forces. Full article

RNA silencing pathways control eukaryotic gene expression transcriptionally or posttranscriptionally in a sequence-specific manner. In RNA silencing, the production of double-stranded RNA (dsRNA) gives rise to various classes of 20–24 nucleotide (nt) small RNAs (smRNAs). In Arabidopsis thaliana, smRNAs are often derived from long dsRNA molecules synthesized by one of the six genomically encoded RNA-dependent RNA Polymerase (RDR) proteins. However, the full complement of the RDR-dependent smRNAs and functions that these proteins and their RNA-binding cofactors play in plant RNA silencing has not been fully uncovered. To address this gap, we performed a global genomic analysis of all six RDRs and two of their cofactors to find new substrates for RDRs and targets of the resulting RDR-derived siRNAs to uncover new functions for these proteins in plants. Based on these analyses, we identified substrates for the three RDRγ clade proteins (RDR3–5), which had not been well-characterized previously. We also identified new substrates for the other three RDRs (RDR1, RDR2, and RDR6) as well as the RDR2 cofactor RNA-directed DNA methylation 12 (RDM12) and the RDR6 cofactor suppressor of gene silencing 3 (SGS3). These findings revealed that the target substrates of SGS3 are not limited to those solely utilized by RDR6, but that this protein seems to be a more general cofactor for the RDR family of proteins. Additionally, we found that RDR6 and SGS3 are involved in the production of smRNAs that target transcripts related to abiotic stresses, including water deprivation, salt stress, and ABA response, and as expected the levels of these mRNAs are increased in rdr6 and sgs3 mutant plants. Correspondingly, plants that lack these proteins (rdr6 and sgs3 mutants) are hypersensitive to ABA treatment, tolerant to high levels of PEG8000, and have a higher survival rate under salt treatment in comparison to wild-type plants. In total, our analyses have provided an extremely data-rich resource for uncovering new functions of RDR-dependent RNA silencing in plants, while also revealing a previously unexplored link between the RDR6/SGS3-dependent pathway and plant abiotic stress responses. Full article

Long non-coding RNA’s (lncRNA) are RNA sequences that do not encode proteins and are greater than 200 nucleotides in length. They regulate complex cellular mechanisms and have been associated with prognosis in various types of cancer. We aimed to identify lncRNA sequences that are associated with high grade serous ovarian cancer (HGSC) and assess their impact on overall survival. RNA was extracted from 112 HGSC patients and 12 normal fallopian tube samples from our Biobank tissue repository. RNA was sequenced and the Ultrafast and Comprehensive lncRNA detection and quantification pipeline (UClncR) was used for the identification of lncRNA sequences. Univariate logistic and multivariate lasso regression analyses identified lncRNA that was associated with HGSC. Univariate and multivariate Cox proportional hazard ratios were used to evaluate independent predictors of survival. 1943 of 16,325 investigated lncRNA’s were differentially expressed in HGSC as compared to controls (p < 0.001). Nine of these demonstrated association with cancer after multivariate lasso regression. Our multivariate analysis of survival identified four lncRNA’s associated with survival in HGSC. Three out of these four were found to be independently significant after accounting for all clinical covariates. Lastly, seven lncRNAs were independently associated with initial response to chemotherapy; four portended a worse response, while three were associated with improved response. More research is needed, but there is potential for these lncRNAs to be used as biomarkers of HGSC or predictors of treatment outcome in the future. Full article

eBASIS (Bioactive Substances in Food Information Systems), a web-based database that contains compositional and biological effects data for bioactive compounds of plant origin, has been updated with new data on fruits and vegetables, wheat and, due to some evidence of potential beneficial effects, extended to include meat bioactives. eBASIS remains one of only a handful of comprehensive and searchable databases, with up-to-date coherent and validated scientific information on the composition of food bioactives and their putative health benefits. The database has a user-friendly, efficient, and flexible interface facilitating use by both the scientific community and food industry. Overall, eBASIS contains data for 267 foods, covering the composition of 794 bioactive compounds, from 1147 quality-evaluated peer-reviewed publications, together with information from 567 publications describing beneficial bioeffect studies carried out in humans. This paper highlights recent updates and expansion of eBASIS and the newly-developed link to a probabilistic intake model, allowing exposure assessment of dietary bioactive compounds to be estimated and modelled in human populations when used in conjunction with national food consumption data. This new tool could assist small- and medium-sized enterprises (SMEs) in the development of food product health claim dossiers for submission to the European Food Safety Authority (EFSA). Full article