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Proteomes
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20 August 2025
Proteomes | Invitation to Read Top 20 Cited Papers Published in 2024


1. “Transforming Clinical Research: The Power of High-Throughput Omics Integration”
by Rui Vitorino
Proteomes 2024, 12(3), 25; https://doi.org/10.3390/proteomes12030025
Available online: https://www.mdpi.com/2227-7382/12/3/25

2. “Biomarkers in Ovarian Cancer: Towards Personalized Medicine”
by Carlos López-Portugués, María Montes-Bayón and Paula Díez
Proteomes 2024, 12(1), 8; https://doi.org/10.3390/proteomes12010008
Available online: https://www.mdpi.com/2227-7382/12/1/8

3. “Proteomics—The State of the Field: The Definition and Analysis of Proteomes Should Be Based in Reality, Not Convenience”
by Jens R. Coorssen and Matthew P. Padula
Proteomes 2024, 12(2), 14; https://doi.org/10.3390/proteomes12020014
Available online: https://www.mdpi.com/2227-7382/12/2/14

 

4. “Key Proteomics Tools for Fundamental and Applied Microalgal Research”
by Maxence Plouviez and Eric Dubreucq
Proteomes 2024, 12(2), 13; https://doi.org/10.3390/proteomes12020013
Available online: https://www.mdpi.com/2227-7382/12/2/13

5. “The Mechanisms of Regulated Cell Death: Structural and Functional Proteomic Pathways Induced or Inhibited by a Specific Protein—A Narrative Review”
by Diego Fernández-Lázaro, Begoña Sanz and Jesús Seco-Calvo
Proteomes 2024, 12(1), 3; https://doi.org/10.3390/proteomes12010003
Available online: https://www.mdpi.com/2227-7382/12/1/3

6. “Enhanced Electrophoretic Depletion of Sodium Dodecyl Sulfate with Methanol for Membrane Proteome Analysis by Mass Spectrometry”
by Hammam H. Said and Alan A. Doucette
Proteomes 2024, 12(1), 5; https://doi.org/10.3390/proteomes12010005
Available online: https://www.mdpi.com/2227-7382/12/1/5

7. How Can Proteomics Help to Elucidate the Pathophysiological Crosstalk in Muscular Dystrophy and Associated Multi-System Dysfunction?
by Paul Dowling, Capucine Trollet, Elisa Negroni, Dieter Swandulla and Kay Ohlendieck
Proteomes 2024, 12(1), 4; https://doi.org/10.3390/proteomes12010004
Available online: https://www.mdpi.com/2227-7382/12/1/4

8. “Seasonal Proteome Variations in Orbicella faveolate Reveal Molecular Thermal Stress Adaptations”
by Martha Ricaurte, Nikolaos V. Schizas, Ernesto F. Weil, Pawel Ciborowski and Nawal M. Boukli
Proteomes 2024, 12(3), 20; https://doi.org/10.3390/proteomes12030020
Available online: https://www.mdpi.com/2227-7382/12/3/20

9. “Proteoform Analysis of the Human Olfactory System: A Window into Neurodegenerative Diseases”
by Eqrem Rusi, Fiorenza Pennacchia, Wael Abu Ruqa, Giuseppina Talarico, Giuseppe Bruno, Antonio Minni and Christian Barbato
Proteomes 2024, 12(1), 9; https://doi.org/10.3390/proteomes12010009
Available online: https://www.mdpi.com/2227-7382/12/1/9

10. “Towards Characterization of Hass Avocado Peel and Pulp Proteome during Postharvest Shelf Life”
by Carolina Camacho-Vázquez, José Miguel Elizalde-Contreras, Francisco Antonio Reyes-Soria,
Juan Luis Monribot-Villanueva, José Antonio Guerrero-Analco, Janet Juarez-Escobar,
Olinda Velázquez-López, Thuluz Meza-Menchaca, Esaú Bojórquez-Velázquez,
Jesús Alejandro Zamora-Briseño et al.
Proteomes 2024, 12(4), 28; https://doi.org/10.3390/proteomes12040028
Available online: https://www.mdpi.com/2227-7382/12/4/28

11. “Phospho-Proteomics Analysis of Early Response to X-Ray Irradiation Reveals Molecular Mechanism Potentially Related to U251 Cell Radioresistance”
by Ousseynou Ben Diouf, Antoine Gilbert, Benoit Bernay, Randi G. Syljuåsen, Mihaela Tudor, Mihaela Temelie, Diana I. Savu, Mamadou Soumboundou, Cheikh Sall and François Chevalier
Proteomes 2025, 13(1), 1; https://doi.org/10.3390/proteomes13010001
Available online: https://www.mdpi.com/2227-7382/13/1/1

12. “Circulating Factors as Potential Biomarkers of Cardiovascular Damage Progression Associated with Type 2 Diabetes”
by Giovanni Sartore, Francesco Piarulli, Eugenio Ragazzi, Alice Mallia, Stefania Ghilardi,
Massimo Carollo, Annunziata Lapolla and Cristina Banfi
Proteomes 2024, 12(4), 29; https://doi.org/10.3390/proteomes12040029
Available online: https://www.mdpi.com/2227-7382/12/4/29

13. “Observations from the Proteomics Bench”
by Simone König, Karin Schork and Martin Eisenacher
Proteomes 2024, 12(1), 6; https://doi.org/10.3390/proteomes12010006
Available online: https://www.mdpi.com/2227-7382/12/1/6

14. “The Current State of Proteomics and Metabolomics for Inner Ear Health and Disease”
by Motahare Khorrami, Christopher Pastras, Paul A. Haynes, Mehdi Mirzaei and Mohsen Asadnia
Proteomes 2024, 12(2), 17; https://doi.org/10.3390/proteomes12020017
Available online: https://www.mdpi.com/2227-7382/12/2/17

15. “Puzzle of Proteoform Variety—Where Is a Key?”
by Stanislav Naryzhny
Proteomes 2024, 12(2), 15; https://doi.org/10.3390/proteomes12020015
Available online: https://www.mdpi.com/2227-7382/12/2/15

16. “Comprehensive Proteome Profiling of a Xanthomonas campestrispv. Campestris B100 Culture Grown in Minimal Medium with a Specific Focus on Nutrient Consumption and Xanthan Biosynthesis”
by Ben Struck, Sanne Jitske Wiersma, Vera Ortseifen, Alfred Pühler and Karsten Niehaus
Proteomes 2024, 12(2), 12; https://doi.org/10.3390/proteomes12020012
Available online: https://www.mdpi.com/2227-7382/12/2/12

17. “Investigating and Annotating the Human Peptidome Profile from Urine under Normal Physiological Conditions”
by Amr Elguoshy, Keiko Yamamoto, Yoshitoshi Hirao, Tomohiro Uchimoto, Kengo Yanagita and Tadashi Yamamoto
Proteomes 2024, 12(3), 18; https://doi.org/10.3390/proteomes12030018
Available online: https://www.mdpi.com/2227-7382/12/3/18

18. “The Current Molecular and Cellular Landscape of Chronic Obstructive Pulmonary Disease (COPD): A Review of Therapies and Efforts towards Personalized Treatment”
by Luke A. Farrell, Matthew B. O’Rourke, Matthew P. Padula, Fernando Souza-Fonseca-Guimaraes, Gaetano Caramori, Peter A. B. Wark, Shymali C. Dharmage and Phillip M. Hansbro
Proteomes 2024, 12(3), 23; https://doi.org/10.3390/proteomes12030023
Available online: https://www.mdpi.com/2227-7382/12/3/23

19. “Protein Extraction Methods Suitable for Muscle Tissue Proteomic Analysis”
by Lorenza Vantaggiato, Claudia Landi, Enxhi Shaba, Daniela Rossi, Vincenzo Sorrentino
and Luca Bini
Proteomes 2024, 12(4), 27; https://doi.org/10.3390/proteomes12040027
Available online: https://www.mdpi.com/2227-7382/12/4/27

20. “Transcriptomics Revealed Differentially Expressed Transcription Factors and MicroRNAs in Human Diabetic Foot Ulcers”
by Vikrant Rai
Proteomes 2024, 12(4), 32; https://doi.org/10.3390/proteomes12040032
Available online: https://www.mdpi.com/2227-7382/12/4/32

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