Food- and Waterborne Pathogens: Epidemiology, Genomics, Virulence, and Resistance Profiles, 2nd Edition

A special issue of Microorganisms (ISSN 2076-2607). This special issue belongs to the section "Environmental Microbiology".

Deadline for manuscript submissions: 31 December 2025 | Viewed by 205

Special Issue Editors


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Guest Editor
National Reference Laboratory for Gastrointestinal Infections, Department of Infectious Diseases, National Institute of Health Doutor Ricardo Jorge, Avenida Padre Cruz, Lisbon, Portugal
Interests: enterobacteria; foodborne pathogens; molecular epidemiology; AMR, virulence; molecular microbiology; one health; WGS
Special Issues, Collections and Topics in MDPI journals

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Guest Editor
Food Microbiology Laboratory, Food and Nutrition Department, National Institute of Health Doutor Ricardo Jorge (INSA), Avenida Padre Cruz, 1649-016 Lisbon, Portugal
Interests: foodborne pathogens

Special Issue Information

Dear Colleagues,

This Special Issue is a continuation of our previous Special Issue, “Food- and Waterborne Pathogens: Epidemiology, Genomics, Virulence, and Resistance Profiles”.

We are pleased to invite you to submit your original research manuscripts to this new Special Issue.

Food- and waterborne infections cause a major economic burden, having a great impact on food safety and human and animal health worldwide. These infections are widely spread through the consumption of food and/or water contaminated by bacteria or their toxins, parasites, and viruses.

This Special Issue aims to better understand the epidemiology, ecology, genomics, virulence, and transmission mechanisms of resistance markers of some of the most important food- and waterborne pathogens, covering the following topics:

  • Food- and waterborne bacterial pathogens (Campylobacter, Salmonella, Yersinia, E. coli, L. monocytogenes, Shigella, Vibrio, S. aureus, and others);
  • Food- and waterborne viral pathogens (Hepatitis A, Norovirus, and others);
  • Food- and waterborne parasites (gondii, T. spiralis, Criptosporidium, and others);
  • Virulence factors and mechanisms of infection;
  • Antimicrobial resistance;
  • Mobile genetic elements;
  • Persistence and biofilms;
  • Whole-genome sequencing;
  • Public health and epidemiology;
  • Trends of microbial pathogens;
  • Influence of environmental changes in gene expression;
  • Animal health;
  • Food safety;
  • Water quality;
  • The prevention and control of food- and waterborne pathogens.

Dr. Angela Pista
Dr. Rita Batista
Guest Editors

Manuscript Submission Information

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Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Microorganisms is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • antimicrobial resistance
  • mobile genetic elements
  • persistence and biofilms
  • whole-genome sequencing
  • public health and epidemiology
  • trends of microbial pathogens
  • influence of environmental changes in gene expression
  • animal health
  • food safety
  • water quality
  • prevention and control of food- and waterborne pathogens

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Published Papers (1 paper)

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Research

11 pages, 1376 KB  
Article
Evaluating the Aquatic Environment as a Reservoir for Salmonella: A Comparative Analysis with Clinical Strains
by Si Hyun Kim, Gyung-Hye Sung, Eun Hee Park, Suk Nam Hwang, Eun-Young Kim, Eunkyoung You, Ja Young Lee, Gyu Ri Kim, Joseph Jeong, Sunjoo Kim and Jeong Hwan Shin
Microorganisms 2025, 13(9), 2072; https://doi.org/10.3390/microorganisms13092072 - 5 Sep 2025
Abstract
Aquatic environments are potential reservoirs for the persistence and spread of pathogenic bacteria. This study investigated the prevalence of Salmonella spp. in stream environments and their relationship with clinical isolates in Republic of Korea. A total of 4582 water samples were collected from [...] Read more.
Aquatic environments are potential reservoirs for the persistence and spread of pathogenic bacteria. This study investigated the prevalence of Salmonella spp. in stream environments and their relationship with clinical isolates in Republic of Korea. A total of 4582 water samples were collected from 94 streams. We identified these isolates using MALDI–TOF MS and the Kauffmann–White scheme. Polymerase chain reaction and sequencing were performed to identify the resistance genes. Whole genome sequencing analysis and pulsed-field gel electrophoresis (PFGE) were performed to investigate genetic relatedness. In total, 110 Salmonella isolates showing 23 serotypes were isolated from the streams. S. Typhimurium (20.9%) was the most common, followed by S. Livingstone (17.3%), S. Infantis (10.9%), S. Othmarschen (6.4%), S. I. 4,[5],12:i:- (5.5%), and S. Thompson (5.5%). PFGE patterns of eight serotypes were identical or closely related to the stream and clinical strains. The sequence types of S. Mbandaka and S. Livingstone isolates from streams were identical to those of the clinical specimens as ST413 and ST543, respectively. Salmonella strains are highly prevalent in streams and are closely related to the isolates obtained from patients. Therefore, the continuous monitoring of stream environments is required to control the spread of Salmonella. Full article
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