Advances in Microbial Adaptation and Evolution

A special issue of Microorganisms (ISSN 2076-2607). This special issue belongs to the section "Environmental Microbiology".

Deadline for manuscript submissions: 31 May 2026 | Viewed by 832

Special Issue Editors


E-Mail Website
Guest Editor
Department of Biology, North Carolina Agricultural and Technical State University, 1601 E. Market Street, Greensboro, NC 27411, USA
Interests: microbial adaptation; bacterial resistance to antibiotics

E-Mail Website
Guest Editor
Biology Department, North Carolina Agricultural and Technical State University, 1601 E Market Street, Greensboro, NC 27411, USA
Interests: microbial adaptation; bacterial resistance to antibiotics

Special Issue Information

Dear Colleagues,

Microorganisms inhabit dynamic and often hostile environments, and their ability to rapidly adapt is central to their ecological success, pathogenicity, and persistence under stress. Adaptation operates across multiple biological scales—from molecular sensing and regulatory rewiring to physiological trade-offs and evolutionary innovation—and is shaped by both environmental pressures and genetic constraints. Understanding these adaptive trajectories is critical for predicting microbial behavior in clinical, industrial, and natural ecosystems.

This Special Issue highlights current advances in microbial adaptation by integrating mechanistic, ecological, and evolutionary perspectives. We welcome studies that probe how selective pressures shape genetic and regulatory architectures; how stress responses transition into heritable evolutionary change; and how pleiotropy, epistasis, and environmental complexity drive or constrain adaptive outcomes. Key questions include: When is adaptation predictable versus contingent? How do regulatory networks facilitate evolvability? What costs accompany adaptive gains? And how do long-term dynamics differ from short-term acclimation?

We invite submissions that explore microbial adaptation through experimental evolution, genomics, transcriptomics, systems biology, and high-resolution phenotyping. Topics of interest include regulatory adaptation, antimicrobial and metal stress evolution, niche specialization, cross-protection and trade-offs, host-microbe evolutionary dynamics, and adaptation to physicochemical surfaces or microenvironments. Both original research and synthetic perspectives are encouraged, particularly those linking mechanistic insight with evolutionary consequence.

Dr. Misty D. Thomas
Prof. Dr. Joseph L. Graves Jr.
Guest Editors

Manuscript Submission Information

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Keywords

  • microbial adaptation
  • experimental evolution
  • regulatory networks
  • two-component systems
  • stress response
  • pleiotropy
  • epistasis
  • antimicrobial resistance
  • genomic evolution
  • phenotype-environment interactions

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Published Papers (1 paper)

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Research

15 pages, 1674 KB  
Article
Transcriptomic Analysis of Fusarium verticillioides Across Different Cultivation Periods Reveals Dynamic Gene Expression Changes
by Meng-Ling Deng, Jun-Jun He, Xin-Yan Xie, Jian-Fa Yang, Fan-Fan Shu, Feng-Cai Zou, Lu-Yang Wang and Jun Ma
Microorganisms 2026, 14(1), 102; https://doi.org/10.3390/microorganisms14010102 - 2 Jan 2026
Viewed by 575
Abstract
Fusarium verticillioides is a common pathogenic fungus of corn since it causes severe yield losses and produces mycotoxins to threaten the health of both humans and livestock. Although extensive research has characterized specific genetic and environmental factors influencing mycotoxin production, a systematic understanding [...] Read more.
Fusarium verticillioides is a common pathogenic fungus of corn since it causes severe yield losses and produces mycotoxins to threaten the health of both humans and livestock. Although extensive research has characterized specific genetic and environmental factors influencing mycotoxin production, a systematic understanding of the temporal transcriptional dynamics governing its developmental progression remains lacking. This study addresses this critical knowledge gap through a time-series transcriptomic analysis of F. verticillioides at four key cultivation stages (3, 5, 7, and 9 days post-inoculation). Transcriptomic analysis identified 1928, 2818, and 1934 differentially expressed genes (DEGs) in the comparisons of FV3 vs. FV5, FV5 vs. FV7, and FV7 vs. FV9, respectively. Gene Ontology enrichment revealed 76, 106, and 56 significantly enriched terms across these comparisons, with “integral component of membrane” consistently being the most enriched cellular component. Pathway analysis demonstrated “amino acid metabolism” and “carbohydrate metabolism” as the most significantly enriched metabolic pathways. Notably, the fumonisin (FUM) and fusaric acid (FA) biosynthetic gene clusters exhibited coordinated peak expression during the early cultivation, followed by progressive decline. Mfuzz clustering further delineated 12 distinct expression trajectories, highlighting the dynamic transcriptional networks underlying fungal adaptation. This work provided the first comprehensive temporal transcriptome of F. verticillioides, establishing a foundational resource for understanding its stage-specific biology and revealing potential time-sensitive targets for future intervention strategies. Full article
(This article belongs to the Special Issue Advances in Microbial Adaptation and Evolution)
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