marinedrugs-logo

Journal Browser

Journal Browser

Marine Genomics and Metabolomics

A special issue of Marine Drugs (ISSN 1660-3397). This special issue belongs to the section "Marine Biotechnology Related to Drug Discovery or Production".

Deadline for manuscript submissions: 28 February 2026 | Viewed by 975

Special Issue Editors


E-Mail Website
Guest Editor
Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via F. Acton 55, 80133 Naples, Italy
Interests: genomics; metabolomics; extremophilic bacteria; mass spectrometry; marine natural products
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Department of Ecosustainable Marine Biotechnology, Stazione Zoologica Anton Dohrn, Via F. Acton 55, 80133 Naples, Italy
Interests: marine natural products; marine bioprospecting; extremophilic bacteria; OSMAC; metabolomics

Special Issue Information

Dear Colleagues,

Marine natural product (MNP) discovery strategies can be classified into two main categories, namely top-down and bottom-up approaches. Top-down approaches do not rely on previous knowledge of MNP biosynthetic gene clusters, and start with sample collection for microbial isolation or chemical extraction. Then, bioassay-guided fractionation and/or the metabolomic profiling of crude extracts lead to the isolation of bioactive hits for structural characterization. Bottom-up approaches mainly employ genome mining, functional genomics, and genetic engineering to elicit the production of MNPs, often encoded by cryptic genes.

Linking genomics and metabolomics has given new momentum to the identification of bioactive compounds from marine macro- and microorganisms. Therefore, this Special Issue invites articles on either genomic or metabolomic dereplication studies on marine macro- and microorganisms leading to the discovery and structural elucidation of novel secondary metabolites. We particularly welcome articles that integrate genomics and metabolomics to chart metabolic diversity in bacterial/fungal isolates as well as microbial communities.

Dr. Gerardo Della Sala
Dr. Fortunato Palma Esposito
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 250 words) can be sent to the Editorial Office for assessment.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Marine Drugs is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2900 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • marine microorganisms
  • marine natural products
  • metabolomics
  • genomics
  • heterologous expression
  • genome mining
  • biosynthetic gene clusters
  • mass spectrometry
  • molecular networking
  • NMR

Benefits of Publishing in a Special Issue

  • Ease of navigation: Grouping papers by topic helps scholars navigate broad scope journals more efficiently.
  • Greater discoverability: Special Issues support the reach and impact of scientific research. Articles in Special Issues are more discoverable and cited more frequently.
  • Expansion of research network: Special Issues facilitate connections among authors, fostering scientific collaborations.
  • External promotion: Articles in Special Issues are often promoted through the journal's social media, increasing their visibility.
  • Reprint: MDPI Books provides the opportunity to republish successful Special Issues in book format, both online and in print.

Further information on MDPI's Special Issue policies can be found here.

Published Papers (1 paper)

Order results
Result details
Select all
Export citation of selected articles as:

Research

16 pages, 2943 KB  
Article
Genomic and Metabolomic Insights into Metabolites of a Streptomyces Isolate Associated with Chromodoris quadricolor, a Red Sea Nudibranch
by Samar M. Abdelrahman, Zoe A. Pratte, Manar El Samak, Noura S. Dosoky, Amro M. S. Hanora, Frank J. Stewart and Nicole B. Lopanik
Mar. Drugs 2025, 23(10), 404; https://doi.org/10.3390/md23100404 - 17 Oct 2025
Viewed by 698
Abstract
The marine invertebrate-associated microbiome has garnered significant interest in recent years due to its wealth of novel genes that can be explored for biomining. By combining genomics with untargeted data-dependent mass spectrometry (MS) and molecular networking, we characterized the secreted metabolome of Streptomyces [...] Read more.
The marine invertebrate-associated microbiome has garnered significant interest in recent years due to its wealth of novel genes that can be explored for biomining. By combining genomics with untargeted data-dependent mass spectrometry (MS) and molecular networking, we characterized the secreted metabolome of Streptomyces sp. In a previous study, we isolated and characterized a strain of Streptomyces, designated as strain 34, from the nudibranch Chromodoris quadricolor, collected by SCUBA diving in the Red Sea near El Tor in the Gulf of Suez, Egypt. In the present study, the Streptomyces isolate was identified as Streptomyces tunisiensis GCF 039538125 1 (p-value: 0). Genomic and metabolomic analysis reveal 36 predicted biosynthetic gene clusters. A total of 569 metabolites were detected in the culture, with 86 of these being identified based on standards and public spectral libraries. Moreover, a single lassopeptide synthesis gene cluster was found in both the genome and the metabolic extract, along with various sets of siderophores identified in the metabolic extract. Since the metabolic processes of marine invertebrate microbiomes are poorly understood, our findings are a significant addition to the research on metabolism in host microbiomes. Full article
(This article belongs to the Special Issue Marine Genomics and Metabolomics)
Show Figures

Graphical abstract

Back to TopTop