Marine Compounds as Protein Kinase Inhibitors

A special issue of Marine Drugs (ISSN 1660-3397).

Deadline for manuscript submissions: closed (31 January 2015) | Viewed by 33632

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Department of Pharmaceutical Chemistry, Christian Albrechts University, Gutenbergstraße 76, 24118 Kiel, Germany
Interests: design; synthesis and biological evaluation of protein kinase inhibitors
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Dear Colleagues,

Biologically active marine derived compounds have been shown to represent an interesting source of novel compounds that are protein kinase inhibitors (PKI). Protein kinases (PK) are validated targets for drug discovery, particularly in cancer. Thus far, a number of potent natural product PKI’s and PK modulators have been isolated including secondary metabolites from marine organisms and these have been useful as pharmacological tools and lead structures to develop novel PKI’s.

Despite their original biological functions, marine compounds often have non-optimal properties when evaluated in vivo such as inappropriate pharmacokinetic properties, or structural complexity that makes them difficult for scale-up synthesis. Therefore, significant medicinal chemistry is often required in order to optimize these compounds for drug discovery purposes. Despite these challenges, a large pool of marine organisms is available to search for novel compounds that could act as novel PKI’s.

Staurosporine, a nonspecific and thus toxic PKI inhibits many of the 518 human PK with high potency and this represents an early and well-known natural product derived PKI. The use of Staurosporine has led to a wealth of ligand-PK structures, providing significant structure-based design opportunities towards more specific PKI’s. The marine-sponge derived Hymenialdisines were discovered as potent inhibitors of PK involved in inflammation, thus blocking interleukin-2/TNF-alpha cytokine production. Subsequently, Hymenialdisine-derived indoloazepine derivatives were optimized leading to selective CHK1 and CHK2 inhibitors. The marine sponge-derived bis-indole alkaloide Fascaplysin, was reported to be a selective CDK4/cyclin D1 ligand. Furthermore, the macrolid lactone Bryostatin-1 produced by Bryozoa, marine invertebrate animals was characterized as a potent modulator of Protein Kinase C. These examples illustrate the importance of marine-derived PKI’s, and no-doubt more novel compounds will be discovered from the oceans in the future.

This Special Issue of Marine Drugs will focus on the exciting area of marine-derived compounds which may allow for novel approaches in PKI drug discovery.


Prof. Dr. Christian Peifer
Guest Editor

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Keywords

  • protein kinase inhibitors (PKI)
  • small molecule PKI (smPKI)
  • marine sponge metabolites
  • potency and selectivity
  • Staurosporine bisindole alkaloids
  • bryostatin-1
  • hymenialdisine
  • fascaplysin
  • anti-cancer activity
  • antibiotic activity

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Published Papers (4 papers)

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Research

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798 KiB  
Article
Novel Adociaquinone Derivatives from the Indonesian Sponge Xestospongia sp.
by Fei He, Linh H. Mai, Arlette Longeon, Brent R. Copp, Nadège Loaëc, Amandine Bescond, Laurent Meijer and Marie-Lise Bourguet-Kondracki
Mar. Drugs 2015, 13(5), 2617-2628; https://doi.org/10.3390/md13052617 - 28 Apr 2015
Cited by 24 | Viewed by 6225
Abstract
Seven new adociaquinone derivatives, xestoadociaquinones A (1a), B (1b), 14-carboxy-xestoquinol sulfate (2) and xestoadociaminals A–D (3a, 3c, 4a, 4c), together with seven known compounds (511) were isolated from [...] Read more.
Seven new adociaquinone derivatives, xestoadociaquinones A (1a), B (1b), 14-carboxy-xestoquinol sulfate (2) and xestoadociaminals A–D (3a, 3c, 4a, 4c), together with seven known compounds (511) were isolated from an Indonesian marine sponge Xestospongia sp. Their structures were elucidated by extensive 1D and 2D NMR and mass spectrometric data. All the compounds were evaluated for their potential inhibitory activity against eight different protein kinases involved in cell proliferation, cancer, diabetes and neurodegenerative disorders as well as for their antioxidant and antibacterial activities. Full article
(This article belongs to the Special Issue Marine Compounds as Protein Kinase Inhibitors)
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807 KiB  
Article
Marine Derived Hamacanthins as Lead for the Development of Novel PDGFRβ Protein Kinase Inhibitors
by Boris Pinchuk, Eugen Johannes, Sheraz Gul, Joachim Schlosser, Christoph Schaechtele, Frank Totzke and Christian Peifer
Mar. Drugs 2013, 11(9), 3209-3223; https://doi.org/10.3390/md11093209 - 26 Aug 2013
Cited by 11 | Viewed by 7796
Abstract
In this study, we report on pyrazin-2(1H)-ones as lead for the development of potent adenosine triphosphate (ATP) competitive protein kinase inhibitors with implications as anti-cancer drugs. Initially, we identified the pyrazin-2(1H)-one scaffold from hamacanthins (deep sea marine sponge alkaloids) [...] Read more.
In this study, we report on pyrazin-2(1H)-ones as lead for the development of potent adenosine triphosphate (ATP) competitive protein kinase inhibitors with implications as anti-cancer drugs. Initially, we identified the pyrazin-2(1H)-one scaffold from hamacanthins (deep sea marine sponge alkaloids) by Molecular Modeling studies as core binding motif in the ATP pocket of receptor tyrosine kinases (RTK), which are validated drug targets for the treatment of various neoplastic diseases. Structure-based design studies on a human RTK member PDGFR (platelet-derived growth factor receptor) suggested a straight forward lead optimization strategy. Accordingly, we focused on a Medicinal Chemistry project to develop pyrazin-2(1H)-ones as optimized PDGFR binders. In order to reveal Structure-Activity-Relationships (SAR), we established a flexible synthetic route via microwave mediated ring closure to asymmetric 3,5-substituted pyrazin-2(1H)-ones and produced a set of novel compounds. Herein, we identified highly potent PDGFR binders with IC50 values in an enzymatic assay below µM range, and possessing significant activity against PDGFR dependent cancer cells. Thus, marine hamacanthin-derived pyrazin-2(1H)-ones showing interesting properties as lead for their further development towards potent PDGFR-inhibitors. Full article
(This article belongs to the Special Issue Marine Compounds as Protein Kinase Inhibitors)
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903 KiB  
Article
Predictive Factors of Sensitivity to Elisidepsin, a Novel Kahalalide F-Derived Marine Compound
by Maria Serova, Armand De Gramont, Ivan Bieche, Maria Eugenia Riveiro, Carlos Maria Galmarini, Miguel Aracil, José Jimeno, Sandrine Faivre and Eric Raymond
Mar. Drugs 2013, 11(3), 944-959; https://doi.org/10.3390/md11030944 - 20 Mar 2013
Cited by 39 | Viewed by 8460
Abstract
Elisidepsin (PM02734, Irvalec®) is a synthetic marine-derived cyclic peptide of the Kahalalide F family currently in phase II clinical development. Elisidepsin was shown to induce rapid oncosis in ErbB3-expressing cells. Other predictive factors of elisidepsin sensitivity remained unknown. A panel of [...] Read more.
Elisidepsin (PM02734, Irvalec®) is a synthetic marine-derived cyclic peptide of the Kahalalide F family currently in phase II clinical development. Elisidepsin was shown to induce rapid oncosis in ErbB3-expressing cells. Other predictive factors of elisidepsin sensitivity remained unknown. A panel of 23 cancer cell lines of different origin was assessed for elisidepsin cytotoxicity and correlated with mutational state, mRNA and protein expression of selected genes. Elisidepsin showed potent and broad cytotoxic effects in our cancer cell line panel, being active at concentrations ranging from 0.4 to 2 μM that may be relevant for clinical settings. We have shown that elisidepsin is more active in cells harboring epithelial phenotype with high E-cadherin and low vimentin expression. In addition, high ErbB3 and Muc1 expression was correlated with sensitivity to elisidepsin, whereas the presence of KRAS activating mutations was associated with resistance. In DU-PM cells with acquired resistance to elisidepsin, ErbB3 expression was decreased, while Bcl2 was increased. DU-PM cells displayed higher sensitivity to ErbB1-inhibitors suggesting possible cross-talk of ErbB1 and ErbB3 signaling pathways. Combinations of elisidepsin with lapatinib and several chemotherapies including 5-FU and oxaliplatin resulted in synergistic effects that offer the potential of clinical use of elisidepsin in combination settings. Full article
(This article belongs to the Special Issue Marine Compounds as Protein Kinase Inhibitors)
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Review

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1747 KiB  
Review
Marine-Derived Angiogenesis Inhibitors for Cancer Therapy
by Ying-Qing Wang and Ze-Hong Miao
Mar. Drugs 2013, 11(3), 903-933; https://doi.org/10.3390/md11030903 - 15 Mar 2013
Cited by 59 | Viewed by 10391
Abstract
Angiogenesis inhibitors have been successfully used for cancer therapy in the clinic. Many marine-derived natural products and their analogues have been reported to show antiangiogenic activities. Compared with the drugs in the clinic, these agents display interesting characteristics, including diverse sources, unique chemical [...] Read more.
Angiogenesis inhibitors have been successfully used for cancer therapy in the clinic. Many marine-derived natural products and their analogues have been reported to show antiangiogenic activities. Compared with the drugs in the clinic, these agents display interesting characteristics, including diverse sources, unique chemical structures, special modes of action, and distinct activity and toxicity profiles. This review will first provide an overview of the current marine-derived angiogenesis inhibitors based on their primary targets and/or mechanisms of action. Then, the marine-derived antiangiogenic protein kinase inhibitors will be focused on. And finally, the clinical trials of the marine-derived antiangiogenic agents will be discussed, with special emphasis on their application potentials, problems and possible coping strategies in their future development as anticancer drugs. Full article
(This article belongs to the Special Issue Marine Compounds as Protein Kinase Inhibitors)
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