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Non-coding RNA and Inflammation

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Immunology".

Deadline for manuscript submissions: closed (30 June 2023) | Viewed by 7650

Special Issue Editors


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Guest Editor
Department of Fundamental Neurosciences, University of Lausanne, 1005 Lausanne, Switzerland
Interests: beta-cells; diabetes

E-Mail Website
Guest Editor
Department of Fundamental Neurosciences, University of Lausanne, 1005 Lausanne, Switzerland
Interests: β-cell dysfunction; noncoding RNAs; islet
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
ULB Center for Diabetes Research, Université Libre de Bruxelles, 1050 Bruxelles, Belgium
Interests: role of tRNA-derived fragments in the pathogenesis of monogenic and polygenic forms of diabetes

Special Issue Information

Dear Colleagues,

Inflammation is part of the process by which the immune system defends the body from invading pathogens. Even though acute inflammation is vital, chronic inflammation increases the risk of various diseases, from cancer to autoimmune disorders. The mechanisms triggering chronic inflammation are still largely unknown, especially in the context of autoimmune diseases.

Non-coding RNA (ncRNAs) are emerging as essential regulators of inflammation and immunity.     According to their length, they are classified as short ncRNAs (less than 200 nucleotides) and long ncRNAs (lncRNA). The former includes microRNAs (miRNAs) and small interfering RNA (siRNAs), both involved in gene expression silencing, Piwi-associated RNAs (piRNAs) known for their role in post-translation regulation, transfer RNA (tRNA) and tRNA-derived fragments (tRFs). tRNAs are among the most adbondant ncRNAs expressed in the cells, with newly discovered roles besides their canonical functions in protein translation, including the generation of specific tRFs able to modulate a large variety of cellular processes.

On the other hand, lncRNAs are a heterogeneous class of transcripts of more than 200 nucleotides with high tissue- and developmental stage-specificity, which play an important role in fine-tuning specialized cellular functions. Circular RNAs (circRNAs) are also included as a sub-class of lncRNA. They can act as miRNA sponges, or similarly to lncRNAs, they can be translated in exotic protein isoforms. The tissue specificity of the lncRNAs makes them attractive candidates for promising therapeutic strategies.

Since ncRNAs are secreted in the blood through extracellular vesicles (EVs) and some of them are particularly stable due to their structure (circRNAs) or the ability of dimerizing (tRFs), they represent potential biomarkers for disease onset/progression monitoring.

A robust amount of data produced in the last decade demonstrates that ncRNAs have primary roles in the activation of the immune cells (i.e., miRNAs and tRFs in T-cell activation) and remarkably interfere in the mechanism of action of chemokines and cytokines. However, the molecular mechanisms of ncRNA-mediated regulation of immune cell activation or change from acute to chronic inflammation are still largely unknown.

This Special Issue will be focussed on mechanistic studies elucidating the role of a particular class of ncRNAs in inflammation, how these molecules act at the cellular level, and how their expression is regulated. Research aimed to identify biomarkers able to monitor the progression of autoimmune diseases will also be considered since they are essential to better understand the evolution of the disease and monitor the effect of different therapeutic strategies. This could be extremely relevant for the detection and monitoring of autoimmune diseases such as type 1 diabetes, wherein the chronic inflammation is silent for years, and the onset of the disease occurs when the immune cells have already killed all the insulin-producing cells. In particular, in this Special Issue we would like to address:

  1. The role of ncRNAs in the development of autoimmune diseases;
  2. Novel functions of tRNAs and tRFs in immunity;
  3. Small and long ncRNAs in inflammation initiation and progression;
  4. CircRNAs in immune responses;
  5. LncRNAs as emerging therapeutics;
  6. Potential role of ncRNAs as biomarkers of inflammation;
  7. Role of ncRNAs in immune cell cross-talk. Up-to-date review articles and experimental papers are welcome.

Dr. Flora Brozzi
Prof. Dr. Romano Regazzi
Prof. Dr. Mariana Igoillo-Esteve
Guest Editors

Manuscript Submission Information

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Keywords

  • immune response
  • Inflammation
  • ncRNAs
  • autoimmune diseases
  • biomarkers
  • circRNA
  • lncRNA
  • tRNA
  • tRFs
  • miRNA
  • piRNA
  • extracellular vesicles
  • therapeutic targets

Published Papers (3 papers)

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Research

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19 pages, 1952 KiB  
Article
microRNAs Control Antiviral Immune Response, Cell Death and Chemotaxis Pathways in Human Neuronal Precursor Cells (NPCs) during Zika Virus Infection
by Carolina M. Polonio, Patrick da Silva, Fabiele B. Russo, Brendo R. N. Hyppolito, Nagela G. Zanluqui, Cecília Benazzato, Patrícia C. B. Beltrão-Braga, Sandra M. Muxel and Jean Pierre S. Peron
Int. J. Mol. Sci. 2022, 23(18), 10282; https://doi.org/10.3390/ijms231810282 - 7 Sep 2022
Cited by 6 | Viewed by 2105
Abstract
Viral infections have always been a serious burden to public health, increasing morbidity and mortality rates worldwide. Zika virus (ZIKV) is a flavivirus transmitted by the Aedes aegypti vector and the causative agent of severe fetal neuropathogenesis and microcephaly. The virus crosses the [...] Read more.
Viral infections have always been a serious burden to public health, increasing morbidity and mortality rates worldwide. Zika virus (ZIKV) is a flavivirus transmitted by the Aedes aegypti vector and the causative agent of severe fetal neuropathogenesis and microcephaly. The virus crosses the placenta and reaches the fetal brain, mainly causing the death of neuronal precursor cells (NPCs), glial inflammation, and subsequent tissue damage. Genetic differences, mainly related to the antiviral immune response and cell death pathways greatly influence the susceptibility to infection. These components are modulated by many factors, including microRNAs (miRNAs). MiRNAs are small noncoding RNAs that regulate post-transcriptionally the overall gene expression, including genes for the neurodevelopment and the formation of neural circuits. In this context, we investigated the pathways and target genes of miRNAs modulated in NPCs infected with ZIKV. We observed downregulation of miR-302b, miR-302c and miR-194, whereas miR-30c was upregulated in ZIKV infected human NPCs in vitro. The analysis of a public dataset of ZIKV-infected human NPCs evidenced 262 upregulated and 3 downregulated genes, of which 142 were the target of the aforementioned miRNAs. Further, we confirmed a correlation between miRNA and target genes affecting pathways related to antiviral immune response, cell death and immune cells chemotaxis, all of which could contribute to the establishment of microcephaly and brain lesions. Here, we suggest that miRNAs target gene expression in infected NPCs, directly contributing to the pathogenesis of fetal microcephaly. Full article
(This article belongs to the Special Issue Non-coding RNA and Inflammation)
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Review

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12 pages, 281 KiB  
Review
Micro RNAs and Circular RNAs in Different Forms of Otitis Media
by Michal Kotowski, Paulina Adamczyk and Jaroslaw Szydlowski
Int. J. Mol. Sci. 2023, 24(7), 6752; https://doi.org/10.3390/ijms24076752 - 4 Apr 2023
Cited by 2 | Viewed by 1303
Abstract
The aim of this comprehensive review was to present the current knowledge on the role of microRNAs (miRNAs) in acute, recurrent, and chronic forms of otitis media. Special attention was focused on cholesteatoma of the middle ear. MicroRNAs modulate gene expression, which, in [...] Read more.
The aim of this comprehensive review was to present the current knowledge on the role of microRNAs (miRNAs) in acute, recurrent, and chronic forms of otitis media. Special attention was focused on cholesteatoma of the middle ear. MicroRNAs modulate gene expression, which, in turn, influences the development and likelihood of the recurrence of acute and aggressive chronic middle ear inflammatory processes. Moreover, this study discusses the modulating role of a specific subgroup of noncoding RNA, circular RNA (circRNA). Recognizing the precise potential pathways and the mechanisms of their function may contribute to a better understanding of the molecular bases of middle ear diseases and identifying novel methods for treating this demanding pathology. Articles published between 2009 and 2022 were used in this analysis. In this review, we provide a complete overview of the latest progress in identifying the role and mechanisms of particular miRNAs and circRNAs in acute, recurrent and chronic forms of otitis media. Full article
(This article belongs to the Special Issue Non-coding RNA and Inflammation)
27 pages, 2979 KiB  
Review
The Role of microRNAs in Inflammation
by Kaushik Das and L. Vijaya Mohan Rao
Int. J. Mol. Sci. 2022, 23(24), 15479; https://doi.org/10.3390/ijms232415479 - 7 Dec 2022
Cited by 28 | Viewed by 3697
Abstract
Inflammation is a biological response of the immune system to various insults, such as pathogens, toxic compounds, damaged cells, and radiation. The complex network of pro- and anti-inflammatory factors and their direction towards inflammation often leads to the development and progression of various [...] Read more.
Inflammation is a biological response of the immune system to various insults, such as pathogens, toxic compounds, damaged cells, and radiation. The complex network of pro- and anti-inflammatory factors and their direction towards inflammation often leads to the development and progression of various inflammation-associated diseases. The role of small non-coding RNAs (small ncRNAs) in inflammation has gained much attention in the past two decades for their regulation of inflammatory gene expression at multiple levels and their potential to serve as biomarkers and therapeutic targets in various diseases. One group of small ncRNAs, microRNAs (miRNAs), has become a key regulator in various inflammatory disease conditions. Their fine-tuning of target gene regulation often turns out to be an important factor in controlling aberrant inflammatory reactions in the system. This review summarizes the biogenesis of miRNA and the mechanisms of miRNA-mediated gene regulation. The review also briefly discusses various pro- and anti-inflammatory miRNAs, their targets and functions, and provides a detailed discussion on the role of miR-10a in inflammation. Full article
(This article belongs to the Special Issue Non-coding RNA and Inflammation)
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