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Mitochondria-Associated Non-Coding RNAs

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Biology".

Deadline for manuscript submissions: closed (20 April 2026) | Viewed by 522

Special Issue Editors


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Guest Editor
Department of Biological Sciences, Faculty of Life Sciences and Institute of Biomedical Sciences, Faculty of Medicine, Universidad Andrés Bello, Santiago 8370146, Chile
Interests: molecular biology of cancer; non-coding RNAs; mitochondrial transfer; human and veterinarian applications of non-coding mitochondrial RNA targets; microRNAs

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Guest Editor
School of Veterinary Medicine, Faculty of Life Sciences, Universidad Andrés Bello, Santiago 8370251, Chile
Interests: cancer; mitochondrial RNA; untranslated RNA; antisense RNA
Special Issues, Collections and Topics in MDPI journals
Department of Anesthesiology and Critical Care Medicine, Cardiovascular Division, Department of Pathology, Johns Hopkins School of Medicine, Baltimore, MD 21205, USA
Interests: obesity; cardiovascular health; muscle cell biology; mitochondrial DNA; microRNA
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Historically considered as the cell’s power plant, mitochondria have emerged as central players in a myriad of key roles besides providing the bulk of cellular ATP. These organelles fulfill an essential role in apoptosis, homeostasis, innate immunity, amino acid metabolism, phospholipid synthesis, and redox homeostasis, among others. The human mitochondrial genome (mtDNA) encodes 2 rRNAs (16S and 12S), 22 tRNAs, and 13 polypeptides involved in oxidative phosphorylation. The remaining proteins essential to mitochondrial function are encoded in the nuclear genome and imported post-translationally into the organelle, which is the result of gene transference from the ancestral prokaryote that gave rise to mitochondria to the nucleus, according to the endosymbiotic theory. Thus, communication between mitochondria and the nucleus has been occurring throughout evolution for billions of years. However, we now know that this trafficking among organelles also includes non-coding RNAs (ncRNAs) to and from the mitochondria, fulfilling a wide array of cellular functions. Several of these transcripts are synthesized in mitochondria and exported to other organelles, including long ncRNAs (lncRNAs), circular RNAs (circRNAs), and microRNAs (miRNAs). Conversely, lncRNAs, miRNAs, and circRNAs derived from nuclear transcription have been reported to enter mitochondria. Finally, some nuclear-encoded lncRNAs have been described to modulate mitochondrial functions without actually entering the organelle. Regardless of their origin, ncRNAs associated with mitochondria (mt-ncRNAs) are involved in several processes, such as oxidative phosphorylation, cell death and survival, mtDNA replication, and mitochondrial gene expression. In line with these functions, mt-ncRNAs are reported to be involved in aging, cancer, neurodegenerative and cardiovascular diseases, among others. Therefore, dysregulation of these transcripts can trigger different pathophysiological processes, and thus mt-ncRNAs are currently under study as potential biomarkers and therapeutic targets. The dissection of the different pathways affected by mt-ncRNAs will lay the groundwork for the development of potential diagnostic and therapeutic strategies for different human pathologies. This Special Issue aims to garner knowledge on the role of mt-ncRNAs involved in the regulation of mitochondrial functions and extra-mitochondrial processes.

Dr. Verónica A. Burzio
Dr. Jaime E. Villegas
Dr. Sam Das
Guest Editors

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Keywords

  • mitochondrial-encoded ncRNAs
  • mitochondrial miRNAs
  • mitochondrial lncRNAs
  • mitochondrial circRNAs
  • nuclear-encoded mitochondrial ncRNAs

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Published Papers (1 paper)

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Review

22 pages, 951 KB  
Review
The Role of MicroRNAs Carried by Extracellular Vesicles in Tumorigenesis Through Reprogramming the Mitochondrial Information Processing System
by Arpita Ghosh-Mitra, Mansi Patel and Samarjit Das
Int. J. Mol. Sci. 2026, 27(11), 5112; https://doi.org/10.3390/ijms27115112 - 5 Jun 2026
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Abstract
Mitochondrial dysfunction is not merely a byproduct of transformation but a driver of tumorigenesis, metastasis, and therapeutic resistance. Recent advancements in intercellular communication have identified Extracellular Vesicles (EVs) or exosomes as critical mediators that bridge the gap between the tumor and its microenvironment [...] Read more.
Mitochondrial dysfunction is not merely a byproduct of transformation but a driver of tumorigenesis, metastasis, and therapeutic resistance. Recent advancements in intercellular communication have identified Extracellular Vesicles (EVs) or exosomes as critical mediators that bridge the gap between the tumor and its microenvironment (TME). These EVs contain a complex repertoire of bioactive cargo, including proteins, lipids, and RNAs. Among the class of RNAs, small non-coding RNAs, microRNAs (miRNAs), are the most abundantly expressed bioactive compounds that are selectively packaged and delivered to recipient cells. EV-delivered miRNAs can target nuclear-encoded mitochondrial genes and have also been reported to localize to mitochondria (mitomiRs), where they function as post-transcriptional regulators of bioenergetic and mitochondrial dynamic adaptations that support tumor progression. This review explores the “EV-miRNA-Mitochondria Axis”, delineating the molecular mechanisms by which EV-carried miRNAs reprogram the “Mitochondrial Information Processing System” (MIPS) - a signaling network where mitochondria integrate metabolic cues (e.g., ROS, calcium flux) to dictate critical biological outcomes, such as immune regulation and cell survival. We summarized specific sorting machineries (e.g., hnRNPA2B1, Lupus La) that package oncogenic miRNAs into EVs and how these cargoes hijack mitochondrial function upon delivery. Specifically, we discussed how EV-miRNAs induce metabolic shifts, manipulate mitochondrial dynamics (fission/fusion), and inhibit the intrinsic apoptosis to drive cancer progression. Finally, we highlighted the dual utility of these EV-miRNAs as drivers of pathogenesis and promising non-invasive biomarkers for early diagnosis, prognostic and therapeutic monitoring. Full article
(This article belongs to the Special Issue Mitochondria-Associated Non-Coding RNAs)
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