Synchrotron Radiation in Crystallography

A special issue of Crystals (ISSN 2073-4352). This special issue belongs to the section "Crystal Engineering".

Deadline for manuscript submissions: closed (1 November 2019) | Viewed by 8566

Special Issue Editor


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Guest Editor
School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, UK
Interests: synchrotron radiation; chemical crystallography; single-crystal X-ray diffraction; crystallographic teaching; structural chemistry; main-group coordination chemistry
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Special Issue Information

Dear Colleagues,

Crystal structure determination using X-rays is a well-established mature discipline with important applications in chemistry, physics, biology, environmental science, materials science, medicine, and engineering. It brings together scientists from a wide range of research areas, and is generally regarded as the most definitive and exhaustive form of experimental structural characterisation, yielding information on detailed molecular geometry and on the arrangement of molecules relative to each other in the solid state, as well as the structures of non-molecular extended network structures such as metal–organic frameworks. Recent years have seen major enhancements in aspects of hardware and software, greatly extending the scope and power of the technique, using both single-crystal and powder diffraction data. Possibly the greatest changes have been seen in X-ray detector technology, with the widespread introduction since the 1990s of successive types of area detectors, giving advantages in speed, sensitivity and accuracy.

X-ray source developments in the local laboratory have also been important, with improvements in intensity, stability, and the use of advanced X-ray optics. However, much greater enhancements are achieved by carrying out data collection at a storage-ring synchrotron source. This brings advantages, not only in X-ray intensity (up to several orders of magnitude over even the very brightest of laboratory sources), but also in beam focusing and collimation, in wavelength selection for various purposes, and in the exploitation of the pulsed time-structure of the incident X-ray beam. Most of these advantages have been recognised and used for decades by biological macromolecular crystallography researchers, but have become generally available in chemical and material science areas only in the last 25 years. Today, numerous synchrotron beamlines offer single-crystal diffraction capabilities for so-called ‘small molecule’ applications, though only very few are dedicated to such applications rather than being shared with other diffraction and/or spectroscopic techniques. Rather more beamlines worldwide are available for powder diffraction. Nevertheless, there is a growing output of synchrotron-derived crystal structures, not only of relatively stable materials but also of transient and excited states through the emerging technique of photocrystallography. Both the facilities themselves and the uses to which they are put are undergoing significant development.

This Special Issue, following a similarly themed issue in 2017, provides a forum for reports on technical developments and their applications, and for novel research in areas of crystallography that depend on, or benefit from, the use of present-day synchrotron facilities. For more details please access the following link: https://www.mdpi.com/journal/crystals/special_issues/crystal_structure_studies.

Scientists working in a wide range of disciplines are invited to contribute to this collection. The topics presented in the keywords broadly cover the focus of this Special Issue, but do not restrict it, as synchrotron applications in crystallography are growing and may well include particular approaches that have not yet been described. Innovative contributions are particularly welcomed.

Prof. William Clegg
Guest Editor

Manuscript Submission Information

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Keywords

  • development and use of synchrotron facilities in crystallography
  • synchrotron crystallography beamlines
  • data collection and processing
  • crystal structures from synchrotron data
  • synchrotron X-ray diffraction
  • synchrotron single-crystal diffraction
  • synchrotron powder diffraction
  • variable-wavelength studies
  • photocrystallography and other time-resolved studies
  • extreme conditions crystallography

Published Papers (2 papers)

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Research

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12 pages, 1577 KiB  
Article
X-ray Assisted Scanning Tunneling Microscopy and Its Applications for Materials Science: The First Results on Cu Doped ZrTe3
by Hui Yan, Nozomi Shirato, Xiangde Zhu, Daniel Rosenmann, Xiao Tong, Weihe Xu, Cedomir Petrovic, Volker Rose and Evgeny Nazaretski
Crystals 2019, 9(11), 588; https://doi.org/10.3390/cryst9110588 - 09 Nov 2019
Cited by 4 | Viewed by 3609
Abstract
Synchrotron X-ray Scanning Tunneling Microscopy (SX-STM) is a novel imaging technique capable of providing real space chemically specific mapping with a potential of reaching atomic resolution. Determination of chemical composition along with ultra-high resolution imaging by SX-STM can be realized through excitation of [...] Read more.
Synchrotron X-ray Scanning Tunneling Microscopy (SX-STM) is a novel imaging technique capable of providing real space chemically specific mapping with a potential of reaching atomic resolution. Determination of chemical composition along with ultra-high resolution imaging by SX-STM can be realized through excitation of core electrons by incident X-rays when their energy is tuned to an absorption edge of a particular atom during raster scanning, as is done in the conventional STM experiments. In this work, we provide a brief summary and the current status of SX-STM and discuss its applications for material science. In particular, we discuss instrumentation challenges associated with the SX-STM technique and present early experiments on Cu doped ZrTe3 single crystals. Full article
(This article belongs to the Special Issue Synchrotron Radiation in Crystallography)
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Review

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24 pages, 1124 KiB  
Review
Probing Trace Elements in Human Tissues with Synchrotron Radiation
by Mihai R. Gherase and David E. B. Fleming
Crystals 2020, 10(1), 12; https://doi.org/10.3390/cryst10010012 - 27 Dec 2019
Cited by 20 | Viewed by 4392
Abstract
For the past several decades, synchrotron radiation has been extensively used to measure the spatial distribution and chemical affinity of elements found in trace concentrations (<few µg/g) in animal and human tissues. Intense and highly focused (lateral size of several micrometers) X-ray beams [...] Read more.
For the past several decades, synchrotron radiation has been extensively used to measure the spatial distribution and chemical affinity of elements found in trace concentrations (<few µg/g) in animal and human tissues. Intense and highly focused (lateral size of several micrometers) X-ray beams combined with small steps of photon energy tuning (2–3 eV) of synchrotron radiation allowed X-ray fluorescence (XRF) and X-ray absorption spectroscopy (XAS) techniques to nondestructively and simultaneously detect trace elements as well as identify their chemical affinity and speciation in situ, respectively. Although limited by measurement time and radiation damage to the tissue, these techniques are commonly used to obtain two-dimensional and three-dimensional maps of several elements at synchrotron facilities around the world. The spatial distribution and chemistry of the trace elements obtained is then correlated to the targeted anatomical structures and to the biological functions (normal or pathological). For example, synchrotron-based in vitro studies of various human tissues showed significant differences between the normal and pathological distributions of metallic trace elements such as iron, zinc, copper, and lead in relation to human diseases ranging from Parkinson’s disease and cancer to osteoporosis and osteoarthritis. Current research effort is aimed at not only measuring the abnormal elemental distributions associated with various diseases, but also indicate or discover possible biological mechanisms that could explain such observations. While a number of studies confirmed and strengthened previous knowledge, others revealed or suggested new possible roles of trace elements or provided a more accurate spatial distribution in relation to the underlying histology. This area of research is at the intersection of several current fundamental and applied scientific inquiries such as metabolomics, medicine, biochemistry, toxicology, food science, health physics, and environmental and public health. Full article
(This article belongs to the Special Issue Synchrotron Radiation in Crystallography)
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