Recent Advances in the Structural and Functional Properties of Glutamate Dehydrogenase

A special issue of Biomolecules (ISSN 2218-273X). This special issue belongs to the section "Enzymology".

Deadline for manuscript submissions: closed (30 March 2025) | Viewed by 1479

Special Issue Editor


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Guest Editor
Neurology/Neurogenetics Laboratory, Medical School, University of Crete, Heraklion, Crete, Greece
Interests: glutamate dehydrogenase; neurodegeneration; enzymatic properties; structure-funcion relationships;
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Special Issue Information

Dear Colleagues,

Glutamate dehydrogenase (GDH) interconverts glutamate to a-ketoglutarate and ammonia. As it plays a crucial role in the interconnecting carbon and nitrogen metabolism, it is found in almost all living organisms. In eukaryotes, GDH is prominently expressed in the mitochondrial matrix, involved in the coupling of glutamate metabolism with energy homeostasis. In addition to the GLUD1 gene (encoding for hGDH1), humans and other apes possess GLUD2 (encoding for hGDH2), an intronless X-linked gene that has evolved through retroposition during primate evolution. In addition to distinct enzymatic and regulatory properties, hGDH2 displays a unique expression pattern compared to hGDH1. These distinct hGDH2 properties suggest a divergent role in nervous and other tissue function that remains to be elucidated. As the two hGDH iso-enzymes are involved in the pathogenesis of metabolic, neurodegenerative, and neoplastic disorders, they have been drawing increasing interest. The 3D structure of hGDH1, hGDH2, and the structures of several other mammalian and non-mammalian GDH1s were determined by X-ray crystallography. These studies show that the mammalian GDH is a symmetric homo-hexamer, with each subunit consisting of the glutamate-binding domain, the NAD+-binding domain, and the regulatory domain. Still, there is more research needed to better delineate structure-function relationships in GDH enzymes.

The aim of this Special Issue is to showcase recent advances in the field of the structure and function of GDH across species, and to display how these advances translate to a better understanding of human physiology and pathophysiology.

Dr. Ioannis Zaganas
Guest Editor

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Keywords

  • glutamate dehydrogenase
  • GLUD1
  • GLUD2
  • structure-function relationships
  • neurodegenerative disorders

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Published Papers (1 paper)

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Research

13 pages, 2476 KiB  
Article
Enzymatic Synthesis of Biologically Active H-Phosphinic Analogue of α-Ketoglutarate
by Vsevolod L. Filonov, Maxim A. Khomutov, Yaroslav V. Tkachev, Artem V. Udod, Dmitry V. Yanvarev, Fabio Giovannercole, Elena N. Khurs, Sergei N. Kochetkov, Daniela De Biase and Alex R. Khomutov
Biomolecules 2024, 14(12), 1574; https://doi.org/10.3390/biom14121574 - 10 Dec 2024
Viewed by 1026
Abstract
Amino acid analogues with a phosphorus-containing moiety replacing the carboxylic group are promising sources of biologically active compounds. The H-phosphinic group, with hydrogen–phosphorus–carbon (H-P-C) bonds and a flattened tetrahedral configuration, is a bioisostere of the carboxylic group. Consequently, amino-H-phosphinic acids [...] Read more.
Amino acid analogues with a phosphorus-containing moiety replacing the carboxylic group are promising sources of biologically active compounds. The H-phosphinic group, with hydrogen–phosphorus–carbon (H-P-C) bonds and a flattened tetrahedral configuration, is a bioisostere of the carboxylic group. Consequently, amino-H-phosphinic acids undergo substrate-like enzymatic transformations, leading to new biologically active metabolites. Previous studies employing NMR-based metabolomic and proteomic analyses show that in Escherichia coli, α-KG-γ-PH (the distal H-phosphinic analogue of α-ketoglutarate) can be converted into L-Glu-γ-PH. Notably, α-KG-γ-PH and L-Glu-γ-PH are antibacterial compounds, but their intracellular targets only partially overlap. L-Glu-γ-PH is known to be a substrate of aspartate transaminase and glutamate decarboxylase, but its substrate properties with NAD+-dependent glutamate dehydrogenase (GDH) have never been investigated. Compounds containing P-H bonds are strong reducing agents; therefore, enzymatic NAD+-dependent oxidation is not self-evident. Herein, we demonstrate that L-Glu-γ-PH is a substrate of eukaryotic GDH and that the pH optimum of L-Glu-γ-PH NAD+-dependent oxidative deamination is shifted to a slightly alkaline pH range compared to L-glutamate. By 31P NMR, we observe that α-KG-γ-PH exists in a pH-dependent equilibrium of keto and germinal diol forms. Furthermore, the stereospecific enzymatic synthesis of α-KG-γ-PH from L-Glu-γ-PH using GDH is a possible route for its bio-based synthesis. Full article
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