Advances and Novel Strategies for Studying Underexplored Post-Translational Modifications (PTMs)

A special issue of Biomolecules (ISSN 2218-273X). This special issue belongs to the section "Molecular Biology".

Deadline for manuscript submissions: 31 January 2026 | Viewed by 712

Special Issue Editor

Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA
Interests: posttranslational modifications; epigenetics; oxygen sensing; chemical proteomics; quantitative proteomics; metabolism; lysine acylation; hydroxylation
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Special Issue Information

Dear Colleagues,

To date, over 600 types of protein post-translational modifications (PTMs) have been documented. However, only a limited number have been thoroughly characterized to understand their regulatory pathways and functional significance in physiology, while the vast majority remain underexplored. Emerging evidence suggests that these lesser-known PTMs play critical roles in diverse metabolic and signaling pathways. Yet, the systematic and functional characterization of underexplored PTMs remains challenging due to several factors.

First, there is often a lack of efficient methods to enrich and confidently identify PTM sites and proteins from complex biological samples. Second, quantitative strategies to assess modification dynamics, prevalence, or crosstalk with other PTMs are frequently lacking. Third, effective approaches to investigate the site-specific roles of PTMs in regulating substrate activity and physiological outcomes remain underdeveloped. Finally, there is a significant knowledge gap regarding the regulatory pathways that control these modifications.

Advances in both technological development and functional studies are urgently needed to close these gaps. Such efforts will deepen our understanding of the biological pathways and networks governed by underexplored PTMs, as well as their dynamics and responses to cellular metabolic changes. Ultimately, this may lay the foundation for the discovery of novel disease markers and therapeutic targets. This Special Issue invites the latest research and reviews on the discovery and functional characterization of underexplored protein modification targets and regulatory enzymes in cellular metabolism, development, aging and various disease phenotypes, including cancer and metabolic diseases.

Dr. Yue Chen
Guest Editor

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Keywords

  • post-translational modifications proteomics
  • chemical biology
  • cell signaling
  • epigenetics
  • metabolic regulation
  • cancer
  • diabetes
  • microbiome
  • aging

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Published Papers (1 paper)

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Review

20 pages, 1902 KB  
Review
Pyruvate Kinase M2 Links Metabolism and Epigenetics: A New Target for Liver Disease Treatment
by Xiaoya Zhang, Danmei Zhang, Jin Guo, Chunxia Shi and Zuojiong Gong
Biomolecules 2025, 15(9), 1327; https://doi.org/10.3390/biom15091327 - 17 Sep 2025
Viewed by 593
Abstract
The aberrant activation of glycolysis plays a pivotal role in the progression of liver diseases. Pyruvate kinase M2 (PKM2), one of the rate-limiting enzymes of glycolysis, not only regulates cellular metabolism but also translocates to the nucleus in its dimeric form, acting as [...] Read more.
The aberrant activation of glycolysis plays a pivotal role in the progression of liver diseases. Pyruvate kinase M2 (PKM2), one of the rate-limiting enzymes of glycolysis, not only regulates cellular metabolism but also translocates to the nucleus in its dimeric form, acting as a co-factor to modulate gene transcription. To further explore the regulatory mechanisms of PKM2, this review outlines the effects of post-translational modifications on PKM2’s structure, activity, and localization, and discusses the integrative role of PKM2 in epigenetics and metabolism, providing a foundation for the development of PKM2 regulators. Due to PKM2’s distinct biochemical properties, targeting PKM2 with specific regulators may offer a promising therapeutic strategy for the treatment of liver diseases. Full article
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