You are currently viewing a new version of our website. To view the old version click .

Methods and Protocols, Volume 7, Issue 6

December 2024 - 22 articles

Cover Story: With the growing interest in malaria-derived extracellular vesicles (EVs), standardizing the isolation protocols is essential for ensuring reproducibility and enabling inter-study comparisons. This article provides a detailed, reproducible differential centrifugation (DC) protocol for isolating EVs from Plasmodium falciparum-infected red blood cell cultures at various asexual blood stages. The method yields two EV subtypes from high-parasitemia, synchronized cultures, characterized by the Western blot analysis of human and parasite proteins, and identifies the potential protein markers for malaria EV subpopulations. Researchers can use this protocol to facilitate downstream applications for further characterisation, such as proteomics and functional studies, advancing our understanding of malaria biology. View this paper
  • Issues are regarded as officially published after their release is announced to the table of contents alert mailing list .
  • You may sign up for email alerts to receive table of contents of newly released issues.
  • PDF is the official format for papers published in both, html and pdf forms. To view the papers in pdf format, click on the "PDF Full-text" link, and use the free Adobe Reader to open them.

Articles (22)

  • Article
  • Open Access
1 Citations
2,775 Views
17 Pages

AI-Assisted High-Throughput Tissue Microarray Workflow

  • Konrad Kurowski,
  • Sylvia Timme,
  • Melanie Christine Föll,
  • Clara Backhaus,
  • Philipp Anton Holzner,
  • Bertram Bengsch,
  • Oliver Schilling,
  • Martin Werner and
  • Peter Bronsert

25 November 2024

Immunohistochemical (IHC) studies of formalin-fixed paraffin-embedded (FFPE) samples are a gold standard in oncology for tumor characterization, and the identification of prognostic and predictive markers. However, despite the abundance of archived F...

  • Article
  • Open Access
8 Citations
10,977 Views
17 Pages

A Critical Exploration of the Total Flavonoid Content Assay for Honey

  • Sharmin Sultana,
  • Ivan Lozada Lawag,
  • Lee Yong Lim,
  • Kevin J. Foster and
  • Cornelia Locher

21 November 2024

This study critically investigates the aluminium chloride–based colorimetric determination of the total flavonoid content (TFC) of honey. Following a comprehensive review of the recent literature reporting the use of the assay in the determinat...

  • Article
  • Open Access
3 Citations
3,390 Views
18 Pages

Digital PCR Validation for Characterization of Quantitative Reference Material of Escherichia coli O157:H7 Genomic DNA

  • Claudia Patricia Tere-Peña,
  • Martha Nancy Calderon-Ozuna and
  • John Emerson Leguizamón Guerrero

15 November 2024

Escherichia coli O157:H7, a Shiga-toxin-producing E. coli (STEC), is an important pathogen related to foodborne disease that is responsible for a growing number of outbreaks worldwide and has been detected in processed meats, dairy, and fresh vegetab...

  • Study Protocol
  • Open Access
3 Citations
2,298 Views
10 Pages

Identifying and Removing Fraudulent Attempts to Enroll in a Human Health Improvement Intervention Trial in Rural Communities

  • Karla L. Hanson,
  • Grace A. Marshall,
  • Meredith L. Graham,
  • Deyaun L. Villarreal,
  • Leah C. Volpe and
  • Rebecca A. Seguin-Fowler

9 November 2024

Using the internet to recruit participants into research trials is effective but can attract high numbers of fraudulent attempts, particularly via social media. We drew upon the previous literature to rigorously identify and remove fraudulent attempt...

  • Protocol
  • Open Access
1 Citations
3,887 Views
33 Pages

9 November 2024

Over the last few decades, malaria-derived extracellular vesicles (EVs) have gained increasing interest due to their role in disease pathophysiology and parasite biology. Unlike other EV research fields, the isolation of malaria EVs is not standardiz...

  • Article
  • Open Access
5 Citations
3,940 Views
13 Pages

Near-Infrared Spectroscopy for Growth Estimation of Spirulina platensis Cultures

  • Lamprini Malletzidou,
  • Eleni Kyratzopoulou,
  • Nikoletta Kyzaki,
  • Evangelos Nerantzis and
  • Nikolaos A. Kazakis

3 November 2024

The present study proposes the use of Near-Infrared (NIR) spectroscopy as a rapid method for estimating the growth of Spirulina platensis cultures, avoiding any sample manipulation or pretreatment. NIR spectroscopy in diffuse reflectance mode was use...

  • Communication
  • Open Access
2,920 Views
9 Pages

Optimizing Arterial Tissue Thickness Measurement Protocols: Digital Vernier Caliper Versus Digital Thickness Gauge

  • Alexandru Petru Ion,
  • Alexandra Asztalos,
  • Claudiu Constantin Ciucanu,
  • Eliza Russu,
  • Adrian Vasile Mureșan,
  • Eliza-Mihaela Arbănași,
  • Traian V. Chirilă,
  • Gabriela Strnad and
  • Emil-Marian Arbănași

2 November 2024

Background: The aim of this study is to analyze the reproducibility of sample thickness measurements taken by a non-experienced user by comparing a standard digital vernier caliper, with four different protocols, to a specialized thickness gauge. Met...

  • Protocol
  • Open Access
3 Citations
3,683 Views
18 Pages

Effect of Biomass Drying Protocols on Bioactive Compounds and Antioxidant and Enzymatic Activities of Red Macroalga Kappaphycus alvarezii

  • Aline Nunes,
  • Felipe de Souza Dutra,
  • Sinara de Nazaré Santana Brito,
  • Milene Stefani Pereira-Vasques,
  • Gadiel Zilto Azevedo,
  • Alex Ricardo Schneider,
  • Eva Regina Oliveira,
  • Alex Alves dos Santos,
  • Marcelo Maraschin and
  • Fábio Vianello
  • + 1 author

1 November 2024

Kappaphycus alvarezii is a red seaweed used globally in various biotechnological processes. To ensure the content and stability of its bioactive compounds postharvest, suitable drying protocols must be adopted to provide high-quality raw materials fo...

  • Study Protocol
  • Open Access
2 Citations
1,985 Views
9 Pages

1 November 2024

South Africa developed the differentiated service delivery (DSD) model to improve access to healthcare for people living with HIV (PLHIV), especially key populations (KPs) including female sex workers (FSWs) who often face barriers in accessing HIV s...

  • Article
  • Open Access
1 Citations
1,998 Views
16 Pages

Method for Valorization of Coffee Cherry Waste via Hydrothermal Valorization Using Organic and Inorganic Acids as Catalysts

  • Alejandra Sophia Lozano Pérez,
  • Valentina Romero Mahecha and
  • Carlos Alberto Guerrero Fajardo

29 October 2024

The valorization of coffee cherry waste through hydrothermal carbonization (HTC) was investigated using various organic and inorganic acid catalysts to produce platform chemicals. This study aimed to evaluate the effectiveness of these catalysts for...

of 3

Get Alerted

Add your email address to receive forthcoming issues of this journal.

XFacebookLinkedIn
Methods Protoc. - ISSN 2409-9279