Genomic Characterization of Salmonella Minnesota Clonal Lineages Associated with Poultry Production in Brazil
Abstract
:Simple Summary
Abstract
1. Introduction
2. Material and Methods
2.1. Bacterial Isolates and Molecular Biology Assays
2.2. Whole-Genome Sequencing
2.3. Acquisition of Genomic Data and in Silico Identification of Genetic Elements
2.4. Identification of Single-Nucleotide Polymorphisms (SNPs) and Construction of Maximum Likelihood Phylogenies
2.5. Tip-Dated Evolutionary Analysis
2.6. Identification of Clade-Associated Genes within S. Minnesota
3. Results
3.1. WGS Data of S. Minnesota and Sequence Types (STs)
3.2. S. Minnesota Isolates of Brazilian Origin Are Confined to Two Lineages
3.3. Bayesian Phylogenetic Analysis of S. Minnesota
3.4. Genes That Confer Resistance to Tetracyclines and Sulfonamides Are Prevalent among the S. Minnesota Poultry Lineages
3.5. Virulence Mapping and Pan-Genome of S. Minnesota
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Kipper, D.; Carroll, L.M.; Mascitti, A.K.; Streck, A.F.; Fonseca, A.S.K.; Ikuta, N.; Lunge, V.R. Genomic Characterization of Salmonella Minnesota Clonal Lineages Associated with Poultry Production in Brazil. Animals 2020, 10, 2043. https://doi.org/10.3390/ani10112043
Kipper D, Carroll LM, Mascitti AK, Streck AF, Fonseca ASK, Ikuta N, Lunge VR. Genomic Characterization of Salmonella Minnesota Clonal Lineages Associated with Poultry Production in Brazil. Animals. 2020; 10(11):2043. https://doi.org/10.3390/ani10112043
Chicago/Turabian StyleKipper, Diéssy, Laura M. Carroll, Andrea K. Mascitti, André F. Streck, André S. K. Fonseca, Nilo Ikuta, and Vagner R. Lunge. 2020. "Genomic Characterization of Salmonella Minnesota Clonal Lineages Associated with Poultry Production in Brazil" Animals 10, no. 11: 2043. https://doi.org/10.3390/ani10112043
APA StyleKipper, D., Carroll, L. M., Mascitti, A. K., Streck, A. F., Fonseca, A. S. K., Ikuta, N., & Lunge, V. R. (2020). Genomic Characterization of Salmonella Minnesota Clonal Lineages Associated with Poultry Production in Brazil. Animals, 10(11), 2043. https://doi.org/10.3390/ani10112043