Foundation of the Belgian Society for Viruses of Microbes and Meeting Report of Its Inaugural Symposium
Abstract
1. Introduction
2. Scientific Sessions
3. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Lavigne, R.; Robben, J. Professor Dr. Richard Bruynoghe: A 1951 overview of his bacteriophage research spanning three decades. Bacteriophage 2012, 2, 1–4. [Google Scholar] [CrossRef]
- Appelmans, R. Le dosage du bacteriophage. Compt. Rend. Soc. Biol. 1921, 85, 1098. [Google Scholar]
- Chanishvili, N.; Sharp, R. Eliava Institute of Bacteriophage, Microbiology and Virology, Tbilisi, Georgia. A Literature Review of the Practical Application of Bacteriophage Research; Eliava Foundation: Tbilisi, Georgia, 2009. [Google Scholar]
- Thomas, R. Control of development in temperate bacteriophages: I. Induction of prophage genes following hetero-immune super-infection. J. Mol. Biol. 1966, 22, 79–95. [Google Scholar] [CrossRef]
- Fiers, W.; Contreras, R.; Duerinck, F.; Haegeman, G.; Iserentant, D.; Merregaert, J.; Min Jou, W.; Molemans, F.; Raeymaekers, A.; Van den Berghe, A.; et al. Complete nucleotide sequence of bacteriophage MS2 RNA: Primary and secondary structure of the replicase gene. Nature 1976, 260, 500–507. [Google Scholar] [CrossRef]
- Pirnay, J.P.; Verbeken, G.; Ceyssens, P.J.; Huys, I.; De Vos, D.; Ameloot, C.; Fauconnier, A. The Magistral Phage. Viruses 2018, 10, 64. [Google Scholar] [CrossRef]
- Schroven, K.; Aertsen, A.; Lavigne, R. Bacteriophages as drivers of bacterial virulence and their potential for biotechnological exploitation. FEMS Microbiol. Rev. 2021, 45, fuaa041. [Google Scholar] [CrossRef]
- De Smet, J.; Hendrix, H.; Blasdel, B.G.; Danis-Wlodarczyk, K.; Lavigne, R. Pseudomonas predators: Understanding and exploiting phage-host interactions. Nat. Rev. Microbiol. 2017, 15, 517–530. [Google Scholar] [CrossRef]
- Costa, A.R.; van den Berg, D.F.; Esser, J.Q.; Muralidharan, A.; van den Bossche, H.; Estrada Bonilla, B.; van der Steen, B.A.; Haagsma, A.C.; Nobrega, F.L.; Haas, P.-J.; et al. Accumulation of defense systems drives panphage resistance in Pseudomonas aeruginosa. bioRxiv 2022. [Google Scholar] [CrossRef]
- Squeglia, F.; Maciejewska, B.; Łątka, A.; Ruggiero, A.; Briers, Y.; Drulis-Kawa, Z.; Berisio, R. Structural and Functional Studies of a Klebsiella Phage Capsule Depolymerase Tailspike: Mechanistic Insights into Capsular Degradation. Structure 2020, 28, 613–624.e4. [Google Scholar] [CrossRef]
- Shan, J.; Ramachandran, A.; Thanki, A.M.; Vukusic, F.B.I.; Barylski, J.; Clokie, M.R.J. Bacteriophages are more virulent to bacteria with human cells than they are in bacterial culture; insights from HT-29 cells. Sci. Rep. 2018, 8, 5091. [Google Scholar] [CrossRef]
- Nale, J.Y.; Redgwell, T.A.; Millard, A.; Clokie, M.R.J. Efficacy of an Optimised Bacteriophage Cocktail to Clear Clostridium difficile in a Batch Fermentation Model. Antibiotics 2018, 7, 13. [Google Scholar] [CrossRef]
- Dowah, A.S.A.; Xia, G.; Ali, A.A.K.; Thanki, A.M.; Shan, J.; Wallis, R.; Clokie, M.R.J. Identification of the receptor-binding protein of Clostridium difficile phage CDHS-1 reveals a new class of receptor-binding domains. bioRxiv 2021. [Google Scholar] [CrossRef]
- Jansen, D.; Matthijnssens, J. The Emerging Role of the Gut Virome in Health and Inflammatory Bowel Disease: Challenges, Covariates and a Viral Imbalance. Viruses 2023, 15, 173. [Google Scholar] [CrossRef]
- Pandolfo, M.; Telatin, A.; Lazzari, G.; Adriaenssens, E.M.; Vitulo, N. MetaPhage: An Automated Pipeline for Analyzing, Annotating, and Classifying Bacteriophages in Metagenomics Sequencing Data. mSystems 2022, 7, e0074122. [Google Scholar] [CrossRef]
- De Maesschalck, V.; Gutiérrez, D.; Paeshuyse, J.; Briers, Y.; Vande Velde, G.; Lavigne, R. A Bioluminescence-Based Ex Vivo Burn Wound Model for Real-Time Assessment of Novel Phage-Inspired Enzybiotics. Pharmaceutics 2022, 14, 2553. [Google Scholar] [CrossRef]
- Antoine, C.; Laforêt, F.; Blasdel, B.; Fall, A.; Duprez, J.N.; Mainil, J.; Delcenserie, V.; Thiry, D. In Vitro Characterization and In Vivo Efficacy Assessment in Galleria mellonella Larvae of Newly Isolated Bacteriophages against Escherichia coli K1. Viruses 2021, 13, 2005. [Google Scholar] [CrossRef]
- Onsea, J.; Post, V.; Buchholz, T.; Schwegler, H.; Zeiter, S.; Wagemans, J.; Pirnay, J.P.; Merabishvili, M.; D’Este, M.; Rotman, S.G.; et al. Bacteriophage Therapy for the Prevention and Treatment of Fracture-Related Infection Caused by Staphylococcus aureus: A Preclinical Study. Microbiol. Spectr. 2021, 9, e0173621. [Google Scholar] [CrossRef]
- Onsea, J.; Soentjens, P.; Djebara, S.; Merabishvili, M.; Depypere, M.; Spriet, I.; De Munter, P.; Debaveye, Y.; Nijs, S.; Vanderschot, P.; et al. Bacteriophage Application for Difficult-to-treat Musculoskeletal Infections: Development of a Standardized Multidisciplinary Treatment Protocol. Viruses 2019, 11, 891. [Google Scholar] [CrossRef]
- Onsea, J.; Uyttebroek, S.; Chen, B.; Wagemans, J.; Lood, C.; Van Gerven, L.; Spriet, I.; Devolder, D.; Debaveye, Y.; Depypere, M.; et al. Bacteriophage Therapy for Difficult-to-Treat Infections: The Implementation of a Multidisciplinary Phage Task Force (The PHAGEFORCE Study Protocol). Viruses 2021, 13, 1543. [Google Scholar] [CrossRef]
Authors | Poster Title |
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Antoine Céline, Laforêt Fanny, Blasdel Bob, Fall Abdoulaye, Duprez Jean-Noël, Mainil Jacques, Delcenserie Véronique, Thiry Damien | In vitro characterization and in vivo assessment of newly isolated phages against Escherichia coli K1 |
Bäcker Leonard *, Staes Ines *, Simoens Kenneth, De Winter Kjerstin, Marolt Gasper, Cenens William, Wolput Sanne, Vazquez Alan, Goos Peter, Lavigne Rob, Bernaerts Kristel, Aertsen Abram | Phage superinfection exclusion factors against host cell scarcity |
Boeckaerts Dimitri, Stock Michiel, De Baets Bernard, Domingo-Calap Pilar, Sanjuan Rafael, Briers Yves | Lessons learned from predicting the structures of over 100 Klebsiella phage receptor-binding proteins |
Boon Maarten, De Zitter Elke, Putzeys Leena, Kuznedelov Konstantin, Severinov Konstantin, Van Meervelt Luc, Lavigne Rob | ‘Drc’ matters: A small ORFan with a big role in phage transcription regulation |
Campobasso Claudia, Wagemans Jeroen, Lavigne Rob, Tavanti Arianna, Di Luca Mariagrazia | Isolation and characterization of the novel Staphylococcus aureus bacteriophage φZeno |
Cepauskas Albinas, Tamman Hedvig, Zhang Tong, Coppieters Wallant Kyo, Kurata Tatsuaki, Talavera Ariel, Marteens Chloe, Hauryliuk Vasili *, Garcia-Pino Abel *, Laub Michael * | Direct activation of an innate immune system in bacteria by a viral capsid protein |
Landlinger Christine, Oberbauer Vera, Podpera Tisakova Lenka, Schwebs Timo, Berdaguer Rocío, van Simaey Leen, Vaneechoutte Mario, Corsini Lorenzo | Preclinical data on the Gardnerella-specific endolysin PM-477 indicate its potential to improve the treatment of bacterial vaginosis through enhanced biofilm removal and avoidance of resistance |
Cremelie Emma, De Groote Philippe, Lamote Babette, Briers Yves | Hacking yeast cells with phage lytic proteins to win the fight against antibiotic resistant bacteria |
Criel Bjorn, Van Criekinge Wim, Briers Yves | Exploring PhaLP, an open-source portal for Phage Lytic Proteins, to engineer modular enzybiotics against vancomycin-resistant Enterococcus faecalis |
Dams Dorien, Latka Agnieszka, Hulsens Mathilde, Drulis-Kawa Zuzanna, Briers Yves | Development of a synthetic, VersaTile strategy for receptor-binding protein engineering of Klebsiella pneumoniae phages |
De Jode Mathieu, Willocx Marie, Djebara Sarah, Pirnay Jean-Paul, Ceyssens Pieter-Jan | Current and future clinical phage product quality control in Belgium |
De Maesschalck Vincent, Briers Yves, Vande Velde Greetje, Lavigne Rob | Development of a bioluminescent ex vivo wound model to characterize novel phage-inspired enzybiotics |
Desmecht Salomé, Antoine Céline, Laforêt Fanny, Duprez Jean-Noël, Schonbrodt Alain, Lieffrig François, Thiry Damien | Isolation and characterization of four new bacteriophages against Aeromonas salmonicida, the causative agent of furunculosis |
De Smet Jeroen | Unraveling the gut virome in Black Soldier Fly larvae (Hermetia illucens) |
Dugauquier Rémy, Ainelo Andres, Pelzer Lara, Garcia-Pino Abel, Lima-Mendez Gipsi | ADAM: Automatic Detection of new Antiviral Mechanisms |
Duyvejonck Lisa, Gerstmans Hans, Stock Michiel, Grimon Dennis, Lavigne Rob, Briers Yves | Diverse configurations of VersaTile-engineered lysins: A rapid and high-throughput evaluation |
Fortuna Kiandro, Holtappels Dominique, Rodrigues Savio, Verwilt Poi, Rediers Hans, Baeyen Steve, Van Vaerenbergh Johan, De Coninck Barbara, Maes Martine6, Lavigne Rob, Wagemans Jeroen | Phage biocontrol of rhizogenic Agrobacterium: Solving the root of the problem |
Goossens Michael, Glonti Téa, Dams Dorien, Łątka Agnieszka, Pirnay Jean-Paul, Briers Yves | SynPhage: The construction of a synthetic Escherichia virus T7 |
Habets Audrey, Antoine Céline, Wagemans Jeroen, Vermeersch Marjorie, Laforêt Fanny, Lavigne Rob, Mainil Jacques, Thiry Damien | Phage-mediated Shiga-toxin gene transduction from O80:H2 Shiga toxigenic E. coli (STEC) to non-STEC strains and in vivo virulence assessment |
Hendrix Hanne, Itterbeek Annabel, Longin Hannelore, Vriens Eveline, Vallino Marta, van Noort Vera, Boon Maarten, Lavigne Rob | A novel regulator of type IV pili assembly, PlzR, induces phage resistance in Pseudomonas aeruginosa |
Itterbeek Annabel, Colak Yunus, Lavigne Rob, Paeshuyse Jan | Nanobodies as a new diagnostic tool for Mycobacterium bovis—optimization of alpaca nanobody displaying phage library preparation |
Laforêt Fanny, Antoine Céline, Blasdel Reuter Bob, Detilleux Johann, Pirnay Jean-Paul, Brisse Sylvain, Fall Abdoulaye, Duprez Jean-Noël, Delcenserie Véronique *, Thiry Damien * | In vitro and in vivo assessments of two bacteriophages against a urinary tract infection Klebsiella pneumoniae |
Lammens Eveline-Marie, Boon Maarten, Grimon Dennis, Briers Yves, Lavigne Rob | SEVAtile: A standardized DNA assembly method optimized for Pseudomonas |
Lechuga Ana, Lood Cédric, Berjón Mónica, del Prado Alicia, Wagemans Jeroen, van Noort Vera, Lavigne Rob, Salas Margarita ‡, Redrejo-Rodríguez Modesto | A yeast two hybrid-high throughput sequencing approach for unraveling interactions between Bam35 and its Bacillus host |
Longin Hannelore, Hendrix Hanne, Lavigne Rob, van Noort Vera | Structural exploration of the impact of phage-driven lysine acetylations on methionine synthase dynamics |
Molendijk Michèle, Bode Lonneke, Phan My, Strepis Nikolas, Worp Nathalie, Nieuwenhuijse David, Schapendonk Claudia, Verbon Annelies, Koopmans Marion, de Graaf Miranda, van Wamel Willem | The efficacy of bacteriophages against clinical Staphylococcus aureus strains under physiological relevant conditions |
Nuytten Manon, Leprince Audrey, Gillis Annika, July Elise, Tesseur Coralie, Mahillon Jacques | Getting outside the cell: Characterization of holins encoded by two phages to exit their Bacillus cereus host |
Olejniczak Sebastian, Otwinowska Aleksandra, Maciejewska Barbara, Łątka Agnieszka, Squeglia Flavia, Briers Yves, Berisio Rita, Drulis-Kawa Zuzanna | Insight into key structural points of capsule-targeting phage depolymerases specific to Klebsiella pneumoniae K63 |
Pas Célia, Dams Dorien, Fieseler Lars, Briers Yves | Engineered phage-tail-like bacteriocins targeting STEC pathogens |
Poppeliers Jorien, Putzeys Leena, Boon Maarten, Lavigne Rob | Bacteriophage LUZ100: an unusual temperate member of the Autographiviridae family infecting Pseudomonas aeruginosa |
Pottie Iris, Duyvejonck Lisa, Briers Yves | Phages in feces: Developing a platform for discovery of Enterococcus lysins |
Putzeys Leena, Boon Maarten, Poppeliers Jorien, Lammens Eveline-Marie, Kuznedelov Konstantin, Severinov Konstantin, Lavigne Rob | ONT-capable-seq: A new approach to explore the transcriptional architecture of bacterial viruses |
Shaikh Hisham Mohammed, Brussaard Corina Paula Dorothea, De Rijcke Maarten | Diversity and ecology of marine viruses in the coastal and open North Sea |
Steinmetz Jenny, Schiavolin Lionel, Smeesters Pierre, Botteaux Anne | Analysis of Group A Streptococcus lytic phage interactions with human serum |
van Beljouw Sam, Hu Chunyi, Haagsma Anna, Rodríguez-Molina Alicia, van den Berg Daan, Vink Jochem, Ke Ailong, Brouns Stan | Craspase is a self-regulating protease that is sequence specifically activated by viral RNA |
van den Berg Daan, van der Steen Baltus, Costa Ana Rita, Brouns Stan | Phage tRNAs evade tRNA-targeting host defenses through anticodon loop mutations |
Vander Elst Niels, De Maesschalck Vincent, De Groote Philippe, Meyer Evelyne, Lavigne Rob *, Briers Yves * | A method for the purification of non-pyrogenic endolysins with an in vitro or in vivo application |
Vander Elst Niels, Linden Sara, Meyer Evelyne, Lavigne Rob, Briers Yves, Nelson Daniel | Characterization of endolysins PlySs-2 and -9 with in vitro lytic activity against bovine mastitis Streptococcus uberis |
Van Espen Lore, Close Lila, Papp Maria, Trebicka Jonel, Matthijnssens Jelle, MICROBPREDICT partners | Human gut phage diversity is increased in patients with acute-on-chronic liver failure |
Wicke Laura, Gerovac Milan, Vogel Jörg, Lavigne Rob | Hunting for phage-encoded small non-coding RNA transcripts |
Wittouck Stijn, van Sinderen Douwe, Mahony Jennifer, Lebeer Sarah | The phageome of Lactobacillaceae |
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Latka, A.; Aertsen, A.; Boeckaerts, D.; Blasdel, B.; Ceyssens, P.-J.; Garcia-Pino, A.; Gillis, A.; Lavigne, R.; Lima-Mendez, G.; Matthijnssens, J.; et al. Foundation of the Belgian Society for Viruses of Microbes and Meeting Report of Its Inaugural Symposium. Viruses 2023, 15, 1213. https://doi.org/10.3390/v15051213
Latka A, Aertsen A, Boeckaerts D, Blasdel B, Ceyssens P-J, Garcia-Pino A, Gillis A, Lavigne R, Lima-Mendez G, Matthijnssens J, et al. Foundation of the Belgian Society for Viruses of Microbes and Meeting Report of Its Inaugural Symposium. Viruses. 2023; 15(5):1213. https://doi.org/10.3390/v15051213
Chicago/Turabian StyleLatka, Agnieszka, Abram Aertsen, Dimitri Boeckaerts, Bob Blasdel, Pieter-Jan Ceyssens, Abel Garcia-Pino, Annika Gillis, Rob Lavigne, Gipsi Lima-Mendez, Jelle Matthijnssens, and et al. 2023. "Foundation of the Belgian Society for Viruses of Microbes and Meeting Report of Its Inaugural Symposium" Viruses 15, no. 5: 1213. https://doi.org/10.3390/v15051213
APA StyleLatka, A., Aertsen, A., Boeckaerts, D., Blasdel, B., Ceyssens, P.-J., Garcia-Pino, A., Gillis, A., Lavigne, R., Lima-Mendez, G., Matthijnssens, J., Onsea, J., Peeters, E., Pirnay, J.-P., Thiry, D., Vandenheuvel, D., Van Mechelen, E., Venneman, J., Verbeken, G., Wagemans, J., & Briers, Y. (2023). Foundation of the Belgian Society for Viruses of Microbes and Meeting Report of Its Inaugural Symposium. Viruses, 15(5), 1213. https://doi.org/10.3390/v15051213