Multi-Locus Phylogenetic Analyses of the Almadablennius Clade Reveals Inconsistencies with the Present Taxonomy of Blenniid Fishes
Abstract
:1. Introduction
2. Methods
3. Results
4. Discussion
5. Systematics
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Fricke, R.; Eschmeyer, W.N.; Fong, J.D. Species by Family/Subfamily. 2018. Available online: http://researcharchive.calacademy.org/research/ichthyology/catalog/SpeciesByFamily.asp (accessed on 10 December 2021).
- Norman, J.R. Notes on the blennioid fishes. I. A provisional synopsis of the genera of the family Blenniidae. Ann. Mag. Nat. Hist. 1943, 11, 793–812. [Google Scholar] [CrossRef]
- Springer, V.G. Osteology and classification of the fishes of the family Blenniidae. Bull. Am. Mus. Nat. 1968, 284, 1–85. [Google Scholar]
- Springer, V.G.; Smith-Vaniz, W.F. A new tribe (Phenablenniini) and genus (Phenablennius) of blenniid fishes based on Petroscirtes heyligeri Bleeker. Copeia 1972, 1, 64–71. [Google Scholar] [CrossRef]
- Smith-Vaniz, W.F.; Springer, V.G. Synopsis of the tribe Salariini, with description of five new genera and three new species (Pisces: Blenniidae). Smithson. Cont. Zool. 1971, 73, 1–72. [Google Scholar] [CrossRef]
- Springer, V.G. Synopsis of the tribe Omobranchini with descriptions of three new genera and two new species (Pisces: Blenniidae). Smithson. Cont. Zool. 1972, 130, 1–31. [Google Scholar] [CrossRef]
- Smith-Vaniz, W.F. The saber-toothed blennies, tribe Nemophini (Pisces, Blenniidae). Monogr. Acad. Nat. Sci. Phila. 1976, 19, 1–196. [Google Scholar]
- Bath, H. Revision der Blenniini (Pisces: Blenniidae). Senckenb. Biol. 1977, 57, 167–234. [Google Scholar]
- Zander, C.D. Kritische Anmerkungen zur “Revision der Blenniini (Pisces: Blenniidae)” von H. Bath (1977). J. Zool. Syst. Evol. Res. 1978, 16, 290–296. [Google Scholar] [CrossRef]
- Bock, M.; Zander, C.D. Osteological characters as tool for blenniid taxonomy—A generic revision of European Blenniidae (Percomorphi; Pisces). J. Zool. Syst. Evol. Res. 1986, 24, 138–143. [Google Scholar] [CrossRef]
- Almada, F.; Almada, V.C.; Guillemaud, T.; Wirtz, P. Phylogenetic relationships of the north-eastern Atlantic and Mediterranean blenniids. Zool. J. Linn. Soc. 2005, 86, 283–295. [Google Scholar] [CrossRef]
- Hundt, P.J.; Iglésias, S.P.; Hoey, A.S.; Simons, A.M. A multilocus molecular phylogeny of combtooth blennies (Percomorpha: Blennioidei: Blenniidae): Multiple invasions of intertidal habitats. Mol. Phylogenetics Evol. 2014, 70, 47–56. [Google Scholar] [CrossRef]
- Williams, J.T. Phylogenetic relationships and revision of the blenniid fish genus Scartichthys. Smithson. Contrib. Zool. 1990, 492, 1–30. [Google Scholar] [CrossRef]
- Almada, V.C.; Robalo, J.I.; Levy, A.; Freyhof, J.; Bernardi, G.; Doadrio, I. Phylogenetic analysis of Peri-Mediterranean blennies of the genus Salaria: Molecular insights on the colonization of freshwaters. Mol. Phylogenetics Evol. 2009, 52, 424–431. [Google Scholar] [CrossRef] [PubMed]
- Levy, A.; Wirtz, P.; Floeter, S.R.; Almada, V.C. The Lusitania Province as a center of diversification: The phylogeny of the genus Microlipophrys (Pisces: Blenniidae). Mol. Phylogenetics Evol. 2011, 58, 409–413. [Google Scholar] [CrossRef] [PubMed]
- Hundt, P.J.; Simons, A.M. Extreme dentition does not prevent diet and tooth diversification within combtooth blennies (Ovalentaria: Blenniidae). Evolution 2018, 72, 930–943. [Google Scholar] [CrossRef]
- Vecchioni, L.; Marrone, F.; Belaiba, E.; Tiralongo, F.; Bahri-Sfar, L.; Arculeo, M. The DNA barcoding of Mediterranean combtooth blennies suggests the paraphyly of some taxa (Perciformes. Blenniidae). J. Fish Biol. 2019, 94, 339–344. [Google Scholar] [CrossRef]
- Nakabo, T. (Ed.) Fishes of Japan with Pictorial Keys to the Species, 3rd ed.; Tokai University Press: Tokyo, Japan, 2013. [Google Scholar]
- Iglésias, S.P. Actinopterygians from the North-Eastern Atlantic and the Mediterranean (A Natural Classification Based on Collection Specimens, with DNA Barcodes and Standardized Photographs; Provisional Version 08, 1 April 2012; MNHN: Paris, France, 2013; Volume I (plates), 245p, Available online: http://www.mnhn.fr/iccanam (accessed on 16 March 2021).
- Tiralongo, F. Blennies of the Mediterranean Sea; Amazon Fulfillment: Poland, 2020. [Google Scholar]
- Ostellari, L.; Bargelloni, L.; Penzo, E.; Patarnello, P.; Patarnello, T. Optimization of single-strand conformation polymorphism and sequence analysis of the mitochondrial control region in Pagellus bogaraveo (Sparidae. Teleostei): Rationalized tools in fish population biology. Anim. Genet. 1996, 27, 423–427. [Google Scholar] [CrossRef]
- Li, C.; Orti, G.; Zhang, G.; Lu, G. A practical approach to phylogenomics: The phylogeny of ray-finned fish (Actinopterygii) as a case study. BMC Ecol. Evol. 2007, 7, 1–11. [Google Scholar] [CrossRef]
- Kumar, S.; Stecher, G.; Li, M.; Knyaz, C.; Tamura, K. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Mol. Biol. Evol. 2018, 35, 1547–1549. [Google Scholar] [CrossRef]
- Thompson, J.D.; Higgins, D.G.; Gibson, T.J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting. position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22, 4673–4680. [Google Scholar] [CrossRef]
- Farris, J.S.; Kallersjo, M.; Kluge, A.G.; Bult, C. Testing significance of incongruence. Cladistics 1995, 10, 315–319. [Google Scholar] [CrossRef]
- Swofford, D.L. Phylogenetic Analysis Using Parsimony (*and Other Methods); Version 4; Sinauer Associate: Sunderland, MA, USA, 2004. [Google Scholar]
- Cunningham, C.W. Can three incongruence tests predict when data should be combined? Mol. Biol. Evol. 1997, 14, 733–740. [Google Scholar] [CrossRef] [PubMed]
- Ronquist, F.; Teslenko, M.; Van der Mark, P.; Ayres, D.L.; Darling, A.; Höhna, S.; Larget, B.; Liu, L.; Suchard, M.A.; Huelsenbeck, J.P. MrBayes v. 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 2012, 61, 539–542. [Google Scholar] [CrossRef] [PubMed]
- Guindon, S.; Gascuel, O. A simple. fast. and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52, 696–704. [Google Scholar] [CrossRef] [PubMed]
- Felsenstein, J. Confidence-limits on phylogenies: An approach using the bootstrap. Evolution 1985, 39, 783–791. [Google Scholar] [CrossRef]
- Belaiba, E.; Marrone, F.; Vecchioni, L.; Bahri-Sfar, L.; Arculeo, M. An exhaustive phylogeny of the combtooth blenny genus Salaria (Pisces. Blenniidae) shows introgressive hybridization and lack of reciprocal mtDNA monophyly between the marine species Salaria basilisca and Salaria pavo. Mol. Phylogenetics Evol. 2019, 135, 210–221. [Google Scholar] [CrossRef]
- Wagner, M.; Zogaris, S.; Berrebi, P.; Freyhof, J.; Koblmüller, S.; Magnan, P.; Laporte, M. Diversity and biogeography of Mediterranean freshwater blennies (Blenniidae, Salaria). Divers. Distrib. 2021, 27, 1832–1847. [Google Scholar] [CrossRef]
- Doadrio, I.; Perea, S.; Yahyaoui, A. A new species of the genus Salaria Forsskål, 1775 (Actinopterygii, Blennidae) in Morocco. Graellsia 2011, 67, 151–173. [Google Scholar] [CrossRef]
- Ferrito, V.; Mauceri, A.; Minniti, F.; Isaja, M.; Maisano, M.; Tigano, C. Comparative morphological studies of the neurocranium and the gills of two species of blennies living in different habitats. Acta Histochem. 2007, 109, 428–436. [Google Scholar] [CrossRef] [PubMed]
- Levy, A.; von der Heyden, S.; Floeter, S.R.; Bernardi, G.; Almada, V.C. Phylogeny of Parablennius Miranda Ribeiro, 1915 reveals a paraphyletic genus and recent Indo-Pacific diversification from an Atlantic ancestor. Mol. Phylogenetics Evol. 2013, 67, 1–8. [Google Scholar] [CrossRef]
- Krupp, F.; Schneider, W. The Fishes of the Jordan River Drainage Basin and Azraq Oasis; Pro Entomologia c/o Natural History Museum: Basel, Switzerland, 1989. [Google Scholar]
- Kottelat, M. Salaria economidisi, a new species of freshwater fish from Lake Trichonis, Greece, with comments on variation in S. fluviatilis (Teleostei: Blenniidae). Rev. Suisse Zool. 2004, 111, 121–137. [Google Scholar] [CrossRef]
- Javonillo, R.; Harold, A.S. A systematic review of the genus Chasmodes (Teleostei: Perciformes: Blenniidae). Zootaxa 2010, 2558, 1–16. [Google Scholar] [CrossRef]
- Araujo, G.S.; Vilasboa, A.; Britto, M.R.; Bernardi, G.; von der Heyden, S.; Levy, A.; Floeter, S.R. Phylogeny of the comb-tooth blenny genus Scartella (Blenniiformes: Blenniidae) reveals several cryptic lineages and a trans-Atlantic relationship. Zool. J. Linn. Soc. 2020, 190, 54–64. [Google Scholar] [CrossRef]
Species | Taxonomical Remarks | Catalog Number | Locality | ENC1 | MYH6 | 16S | Dloop |
---|---|---|---|---|---|---|---|
Aidablennius sphynx (Valenciennes, 1836) | - | MNHN 2012-0219 | Balearic Islands, Spain | KF678553 | KF678648 | MW980003 | MZ026013 |
Blennius ocellaris Linnaeus, 1758 | - | MNHN 2012-0221 | Balearic Islands, Spain | KF678554 | KF678649 | MW980004 | MZ026014 |
Chasmodes bosquianus (Lacepède, 1800) | - | JFBM 46472-2 | Virgnia, USA | KF678501 | KF678601 | MW980005 | MZ026015 |
Chasmodes longimaxilla Williams, 1983 | - | JFBM 46845-1433 | Texas, USA | KF678530 | KF678627 | MW980006 | MZ026016 |
Chasmodes saburrae Jordan and Gilbert, 1882 | - | JFBM 46414-2 | Florida, USA | KF678500 | KF678600 | MW980007 | MZ026017 |
Hypleurochilus bananensis (Poll, 1959) | - | EFMM-20-201013 | Bacoli, Italy | MZ025976 | MZ025994 | MW980008 | MZ026018 |
Hypleurochilus fissicornis (Quoy and Gaimard, 1824) | - | - | Punta Ballena, Uruguay | MG779097 | MG779132 | MW980009 | MZ026019 |
Hypleurochilus sp. | - | JFBM 46839-TX-002 | Texas, USA | KF678526 | KF678623 | MW980010 | MZ026020 |
Parablennius incognitus (I) Miranda Ribeiro, 1915 | - | MNHN 2012-0237 | Balearic Islands, Spain | KF678558 | KF678653 | MW980011 | - |
Parablennius incognitus (II) | - | EFMM-8-090815 | Milazzo, Italy | MZ025977 | MZ025995 | MW980012 | MZ026021 |
Parablennius incognitus (III) | - | EFMM-12–140815 | Avola, Italy | MZ025978 | MZ025996 | MW980013 | MZ026022 |
Parablennius intermedius Miranda Ribeiro, 1915 | - | AMS I.45631-021 | New South Wales, Australia | KF678474 | KF678576 | MW980014 | MZ026023 |
Parablennius pilicornis Miranda Ribeiro, 1915 | - | MNHN 2012-0240 | Banyuls sur Mer, France | KF678560 | KF678655 | MW980015 | MZ026024 |
Parablennius rouxi Miranda Ribeiro, 1915 | - | MNHN 2012-0242 | Banyuls sur Mer, France | KF678561 | MG779139 | MW980016 | MZ026025 |
Parablennius salensis Miranda Ribeiro, 1915 | - | JFBM 47280-1 | Cape Verde | MG779103 | - | MW980017 | MZ026026 |
Parablennius tasmanianus Miranda Ribeiro, 1915 | - | SAMAF 12607 | Sturt Bay, Australia | MG779104 | MG779141 | MW980018 | MZ026027 |
Parablennius tentacularis Miranda Ribeiro, 1915 | - | MNHN 2012-0406-BPS2265 | Port-Vendres, France | MG779105 | - | MW980019 | MZ026028 |
Parablennius yatabei Miranda Ribeiro, 1915 | - | JFBM 47154-1568 | Kochi, Japan | KF678540 | KF678636 | MW980020 | MZ026029 |
Parablennius zvonimiri (I) Miranda Ribeiro, 1915 | - | EFMM-25-100716 | Avola, Italy | MZ025979 | MZ025997 | MW980021 | MZ026030 |
Parablennius zvonimiri (II) | - | MNHN 2012-0247 | Banyuls sur Mer, France | KF678564 | KF678657 | MW980022 | MZ026031 |
Hypsoblennius hentz (Lesueur, 1825) | - | JFBM 46471-VIMS10-78 | Virgnia, USA | KF678572 | KF678666 | MW980023 | MZ026032 |
Hypsoblennius sordidus (Bennett, 1828) | - | - | Chile | MG779098 | MG779133 | MW980024 | MZ026033 |
Parablennius gattorugine (I) Miranda Ribeiro, 1915 | - | MNHN 2012-0229 | Banyuls sur Mer, France | KF678557 | KF678652 | MW980025 | MZ026034 |
Parablennius gattorugine (II) | - | EFMM-16-060915 | Avola, Italy | MZ025980 | MZ025998 | MW980026 | MZ026035 |
Parablennius parvicornis Miranda Ribeiro, 1915 | - | MNHN 2012-0238 | Terceira, Azores | KF678559 | KF678654 | MW980027 | MZ026036 |
Parablennius ruber Miranda Ribeiro, 1915 | - | MNHN 2012-0243 | Terceira, Azores | KF678562 | MG779140 | MW980028 | MZ026037 |
Parablennius sanguinolentus (I) Miranda Ribeiro, 1915 | - | EFMM-23-181115 | Ognina, Italy | MZ025981 | MZ025999 | MW980029 | MZ026038 |
Parablennius sanguinolentus (II) | - | EFMM-27-100716 | Avola, Italy | MZ025982 | MZ026000 | MW980030 | MZ026039 |
Parablennius sanguinolentus (III) | - | MNHN 2012-0246 | Banyuls sur Mer, France | KF678563 | KF678656 | MW980031 | MZ026040 |
Salaria basilisca (I) (Valenciennes, 1836) | - | MZFU-17633 | Ghar El Melh, Tunisia | - | - | MH724822 | MH715446 |
Salaria basilisca (II) | - | MZFU-17634 | Sayeda, Tunisia | - | - | MH724823 | MH715447 |
Salaria pavo (I) (Risso, 1810) | - | - | Palermo, Italy | MZ025983 | MZ026001 | MH724841 | MH715465 |
Salaria pavo (II) | - | - | Palermo, Italy | MZ025984 | MZ026002 | MH724842 | MH715466 |
Salaria pavo (III) | - | MNHN 2003-1994 | Ile-Tudy, France | KF678551 | KF678646 | MW980032 | MZ026041 |
Salariopsis * atlantica (I) Doadrio, Perea & Yahyaoui, 2011 | Previously the genus referred to Salaria Forsskål, 1775 | MNCN 279641-279660 | Ouerrha R. Morocco | - | - | FJ465736 | FJ465527 |
Salariopsis * atlantica (II) | Previously the genus referred to Salaria Forsskål, 1775 | MNCN 279641-279660 | Ouerrha R. Morocco | - | - | FJ465737 | FJ465526 |
Salariopsis * economidisi (I) (Kottelat, 2004) | Previously the genus referred to Salaria Forsskål, 1775 | - | Lake Trichonis, Greece | MZ025985 | MZ026003 | MW980033 | MZ026042 |
Salariopsis * economidisi (II) | Previously the genus referred to Salaria Forsskål, 1775 | - | Lake Trichonis, Greece | MZ025986 | MZ026004 | MW980034 | MZ026043 |
Salariopsis * economidisi (III) | Previously the genus referred to Salaria Forsskål, 1775 | - | Lake Trichonis, Greece | MZ025987 | MZ026005 | MW980035 | MZ026044 |
Salariopsis * fluviatilis (I) (Asso, 1801) | Previously the genus referred to Salaria Forsskål, 1775 | MZFU-17635 | Stream Frattina, Italy | MZ025988 | MZ026006 | MH724847 | MH715471 |
Salariopsis * fluviatilis (II) | Previously the genus referred to Salaria Forsskål, 1775 | MZFU-17636 | Lake Garda, Italy | MZ025989 | MZ026007 | MH724848 | MH715472 |
Salariopsis * fluviatilis (III) | Previously the genus referred to Salaria Forsskål, 1775 | - | - | HM050017 | HM050075 | - | - |
Scartella caboverdiana (Bath, 1990) | - | JFBM 47282 | Cape Verde | MG779110 | MG779147 | MW980036 | MZ026045 |
Scartella cristata (I) (Linnaeus, 1758) | - | TIUFRN3520 | - | MZ025990 | MZ026008 | MW980037 | MZ026046 |
Scartella cristata (II) | - | BPS3411 | Eastern Atlantic | MZ025991 | MZ026009 | MW980038 | MZ026047 |
Scartella cristata (III) | - | EFMM-4-060815 | Avola, Italy | MZ025992 | MZ026010 | MW980039 | MZ026048 |
Scartella cristata (IV) | - | EFMM-24-090716 | Avola, Italy | MZ025993 | MZ026011 | MW980040 | MZ026049 |
Scartella emarginata (Günther, 1861) | - | JFBM 47159-1576 | Kochi, Japan | KF678541 | KF678637 | MW980041 | MZ026050 |
Scartella itajobi (Rangel and Mendes, 2009) | - | TIUFRN3508 | - | - | MZ026012 | MW980042 | MZ026051 |
Diademichthys lineatus (Sauvage, 1883) | - | - | - | JX188985 | JX189754 | - | - |
Enneapterygius minutus (Günther, 1877) | - | JFBM 46377-1224 | - | KF678492 | KF678594 | - | - |
Species | Dorsal Fin | Anal Fin | Pectoral Fin | Pelvic Fin |
---|---|---|---|---|
Salariopsis fluviatilis | XII-XIII, 16–17 d | II, 16–19 c | 12–14 d | I, 3 a |
Salariopsis economidisi | XII-XIII, 16–17 b | II, 16–19 c | 13–14 b | I, 3 d |
Salariopsis atlantica | XII-XIII, 16–17 c | II, 16–17 c | 10–11 c | II, 2–4 c |
Salaria pavo | XI-XIII, 22–25 b | II, 23–26 c | 14 a | I, 3 a |
Salaria basilisca | XI-XIII, 23–27 a | II, 25–28 c,d | 14 a | I, 2–3 a,d |
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Vecchioni, L.; Ching, A.C.; Marrone, F.; Arculeo, M.; Hundt, P.J.; Simons, A.M. Multi-Locus Phylogenetic Analyses of the Almadablennius Clade Reveals Inconsistencies with the Present Taxonomy of Blenniid Fishes. Diversity 2022, 14, 53. https://doi.org/10.3390/d14010053
Vecchioni L, Ching AC, Marrone F, Arculeo M, Hundt PJ, Simons AM. Multi-Locus Phylogenetic Analyses of the Almadablennius Clade Reveals Inconsistencies with the Present Taxonomy of Blenniid Fishes. Diversity. 2022; 14(1):53. https://doi.org/10.3390/d14010053
Chicago/Turabian StyleVecchioni, Luca, Andrew C. Ching, Federico Marrone, Marco Arculeo, Peter J. Hundt, and Andrew M. Simons. 2022. "Multi-Locus Phylogenetic Analyses of the Almadablennius Clade Reveals Inconsistencies with the Present Taxonomy of Blenniid Fishes" Diversity 14, no. 1: 53. https://doi.org/10.3390/d14010053
APA StyleVecchioni, L., Ching, A. C., Marrone, F., Arculeo, M., Hundt, P. J., & Simons, A. M. (2022). Multi-Locus Phylogenetic Analyses of the Almadablennius Clade Reveals Inconsistencies with the Present Taxonomy of Blenniid Fishes. Diversity, 14(1), 53. https://doi.org/10.3390/d14010053