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IJMSInternational Journal of Molecular Sciences
  • Review
  • Open Access

6 November 2015

Contribution of the Type II Chaperonin, TRiC/CCT, to Oncogenesis

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1
Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA
2
Division of Internal Medicine, the University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
3
Department of Molecular Cardiology, Texas Heart Institute, Houston, TX 77030, USA
*
Author to whom correspondence should be addressed.
This article belongs to the Special Issue Protein Folding

Abstract

The folding of newly synthesized proteins and the maintenance of pre-existing proteins are essential in sustaining a living cell. A network of molecular chaperones tightly guides the folding, intracellular localization, and proteolytic turnover of proteins. Many of the key regulators of cell growth and differentiation have been identified as clients of molecular chaperones, which implies that chaperones are potential mediators of oncogenesis. In this review, we briefly provide an overview of the role of chaperones, including HSP70 and HSP90, in cancer. We further summarize and highlight the emerging the role of chaperonin TRiC (T-complex protein-1 ring complex, also known as CCT) in the development and progression of cancer mediated through its critical interactions with oncogenic clients that modulate growth deregulation, apoptosis, and genome instability in cancer cells. Elucidation of how TRiC modulates the folding and function of oncogenic clients will provide strategies for developing novel cancer therapies.

1. Molecular Chaperones and Oncogenesis

Molecular chaperones constitute a major arm of the proteostasis network (Figure 1); they play a central role in the maintenance of protein homeostasis through an intricate system of cooperative mechanisms that balance protein biosynthesis, folding, translocation, assembly/disassembly, and clearance [1,2]. Molecular chaperones are a diverse group of proteins that interact with and assist other proteins to properly attain functional conformation [3]. They can be classified into two mechanistic classes—chaperones that promote folding of non-native proteins by binding to and releasing their substrates into the bulk matrix of the cell and chaperones that promote folding by sequestering single protein molecules within a molecular cage (chaperonins). The former include most heat shock proteins (HSPs) whose expression is known to be up regulated in response to environmental stress, most prominently, HSP70 and HSP90. The eukaryotic chaperonin family includes the type I chaperonin, HSP60, and the type II hetero-oligomeric chaperonin, TRiC (T-complex protein-1 ring complex, also known as CCT). Chaperones often function as large protein complexes that include other proteins called co-chaperones. They are essential for cell survival as they protect against proteotoxic stress that may lead to protein misfolding and aggregation. The primary action of chaperones is to transiently bind to hydrophobic regions of nascent or stress denatured proteins and prevent aggregation during the folding process [4].
Figure 1. Model of the chaperone network involving HSP70, HSP90, and TRiC (T-complex protein-1 ring complex, also known as CCT). Newly synthesized nascent polypeptide chain interacts with the HSP70 family, which mediates folding either co-translationally or post-translationally. HSP70 also can deliver a folding-intermediate to downstream chaperones HSP90 or TRiC/CCT to complete folding.
Increased protein chaperone capacity has been linked to the etiology of many diseases including cancer [5]. Considerable evidence now exists implicating molecular chaperones in the development of cancer; they have been shown to play a fundamental role in the molecular mechanisms that lead to the emergence and progression of the tumor phenotype. Accordingly, levels of heat-shock factor 1 (HSF1), a transcriptional regulator of protein homeostasis that activates the transcription of HSPs most importantly HSP70 and HSP90, has been shown to be elevated in many cancer cell lines and tumors [6]. Indeed, the expression of several HSPs is increased in many tumors, such that HSPs are prognostic biomarkers in cancer and their overexpression is linked to poor survival and response to therapy [7]. The sensitivity of a wide variety of tumors to inhibitors of HSP90 and HSP70 exemplifies the importance of molecular chaperones in maintaining survival of cancer cells [8,9].
The contribution of TRiC to cancer has not received as much attention as members of HSPs [5,7,9]; however, evidence is now emerging implicating TRiC in the pathogenesis of numerous cancers. Importantly, several proteins associated with tumorigenesis have been identified as bona fide TRiC clients; these include signal transducer and activator transcription (STAT3), cyclins B and E, P53 and Von Hippel-Lindau [10,11,12,13,14].
A recent study suggested that TRiC subunits, CCT2 and CCT1, are essential for survival and proliferation of breast cancer [15]. CCT1 was shown to be transcriptionally modulated by the driver oncogene, phosphatidylinositide 3-kinases (PI3K). Whether these observations reflect the protein folding function of TRiC complex or a non-chaperoning role of individual subunits is not clear; however, individual subunits of TRiC have been shown to have protein-folding capacity [16]. While higher expression levels of TRiC have been associated with tumorigenesis, a recent analysis of cancer cell lines appeared to show less correlation between TRiC concentrations and its specific activity The disparity between TRiC concentrations and TRiC activity has been attributed to the dynamic partitioning of substrates between TRiC, its co-chaperones, and HSPs that seems to be influenced by concentrations of HSP70 within the cell [8,17].

2. Role of Heat Shock Proteins (HSPs) in Oncogenic Signaling

Chaperone support and maintenance of oncogenic signaling pathways is integral to the biology of malignant tumor initiation and growth. For example, HSP90’s activity is necessary for the conformational stability and activity of many kinases, transcription factors and hormones most of which are known oncogenes or closely linked to oncogenic signaling pathways [18,19,20]. The cytoprotective qualities of the protein folding network and its ability to adaptively respond to environmental cues have been co-opted in cancer. Chaperones are essential in supporting events that induce malignant cell transformation such as mutations or increased expression of oncogenic proteins and play a crucial role in helping rewire signaling pathways and networks toward increased survival and proliferation as well as increased immune evasion [5,9]. Because of the universal role that chaperones play in supporting cellular signaling networks, it is not surprising that they have been implicated in all characteristic hallmarks of cancer, i.e., self-sufficiency in growth signals, insensitivity to growth-inhibitory signals, evasion of apoptosis and increased replicative potential [21]. It is clear that the action of chaperones underpins molecular aspects of these hallmarks. For example, both HSP70s and HSP90 are known to have a critical role in the modulation of programmed cell death (PCD) and the ability of cancer cells to avoid apoptosis. HSP90 and HSP70 help cancer cells avoid apoptosis by the direct modulation of the apoptotic machinery or by controlling the activation signaling networks that control apoptosis [22]. Interestingly, TRiC also associates with STAT3 a transcriptional regulator of anti-apoptotic proteins [10].
Cellular identity is mainly a product of epigenetic regulation. The modulators of epigenetic changes are increasingly being accepted as important drivers of the cancer phenotype. Thus, in addition to buffering genomic alterations during oncogenesis, chaperones, especially HSP90, have been implicated in the direct modulation of the epigenetic memory system and transcription regulation [23,24].
Perhaps more significantly is the role of chaperones within the tumor microenvironment. The tumor is a harsh environment for cellular life; in order for cells to survive they must be able to withstand adverse conditions, such as low oxygen levels, low pH and lack of nutrients. Chaperones have been shown to play a critical role in the adaptive mechanisms within the hostile tumor microenvironment. Induction of tumor angiogenesis is one of the critical adaptations necessary to overcome oxygen and nutrient deficiencies and to promote tumor growth and progression. Hypoxia-inducible factor-1α (HIF-1α), the extremely labile master regulator of angiogenesis, is stabilized by HSP70 and HSP90 [25]. HSP70 and TRiC are required for the proper folding of Von Hippel-Lindau protein that modulates, in an oxygen-dependent manner, the concentration of hypoxia-inducible transcription factor, HIF-1α, and other proteins required for tumor growth and vascularization [14,26].
As discussed previously, it has been hypothesized that chaperones such as HSP90 cushion the impact of genomic mutations, thus facilitating the evolutionary process [27,28]. Oncogenesis in itself can be looked upon as a micro-evolutionary process in which the hostile environment within the tumor provides selection pressure [29]. Indeed, it is becoming increasingly evident that elevated chaperone activity imparts a survival advantage on transformed cells over normal non-transformed ones within the tumor microenvironment. The adverse tumor conditions have been shown to be a major source of DNA damage, mutagenesis and genetic instability that lead to more transformation, tumor heterogeneity and drug resistance [30,31]. In this review, we highlight the role of chaperones especially chaperonin TRiC/CCT in tumorigenesis and discuss recent findings looking at its impact on the folding and function of oncoproteins as well as tumor suppressors.

3. TRiC: The Protein-Folding Machine in Eukaryotes

TRiC (T-complex protein-1 ring complex, also known as CCT) is an essential 1 MDa eukaryotic chaperonin. It has a double-ring structure with a central cavity in each ring [32]; each ring is composed of eight homologous but distinct subunits (CCT 1–8) [33,34], arranged in a specific order [35,36] (Figure 2A). Each subunit is ~60 kDa and consists of three domains—apical, intermediate, and equatorial (Figure 2B). While the sequence of the equatorial and intermediate domains is conserved, that of the apical domains is highly diverged among the eight subunits [37]. Multiple structures have been reported for TRiC [38,39,40] using x-ray crystallography (Figure 2A) and single particle cryo-EM.
TRiC assists productive folding of substrate proteins by undergoing conformational changes that are ATP-dependent [41,42,43,44]. The structures of the TRiC in the presence of varied nucleotide conditions have been solved using cryo-EM at intermediate resolution, which have lead to an improved understanding of the large conformational changes that occur upon nucleotide binding and hydrolysis [40,45,46]. The conformational cycling begins with the binding of ATP and a transition of the complex to the closed conformation required for ATP hydrolysis to bring the lid helices into close proximity. Opening of the lid occurs in conjunction with releasing ADP from the active site. The complex can exist in an asymmetrical conformation with one ring closed and one open even during ATP cycling conditions, suggesting a inter-ring allosteric model mediated through a two-stroke mechanism [47]. However, the allosteric communication that occurs between the rings is not well understood.
Figure 2. Molecular architecture of TRiC/CCT. (A) The end-on and side views of the X-ray crystal structure of TRiC, modified from PDB ID 2XSM, show that TRiC is a double-ringed structure composed of eight homologous but distinct subunits (CCT1–8). Each subunit is shown having a different color with the specific subunit order indicated. The black arrowhead indicates CCT1, which has unique asymmetrical features; (B) The X-ray structure of CCT1 is shown as a representative subunit. Helix-11 (H11), the putative substrate recognition site is indicated by the arrow.
Although the mechanisms of TRiC-substrate recognition, binding, and folding remain under investigation, each of the subunits can recognize different polar and hydrophobic motifs within substrate proteins [48]. TRiC interacts with approximately 10% of the proteome and its function is absolutely essential for viability [49]. TRiC substrates have been identified by multiple groups [50,51] and, recently, Yam and colleagues determined ~200 cellular TRiC substrates using proteomic global approaches based on immunoprecipitation and mass spectroscopy [49]. From the secondary structure analysis of the substrates, TRiC has been shown to mediate the folding of a number of β-sheet rich proteins, including telomerase cofactor TCAB1 [52], the cell cycle regulators CDC20 and CDH1 [49], as well as members of the STAT family of transcription factors [10]. However, the full repertoire of TRiC substrates remains underdetermined, in part, because specific motifs characteristic of TRiC substrates have not been identified. As a general principle, TRiC substrates have a higher potential to aggregate. Substrate proteins also are often large, have extended hydrophobic stretches, or are involved in multi-protein complexes [53]. The ability to assist such a wide range of proteins with diverse folds and sequence properties raises the potential for multiple mechanisms through which TRiC can recognize substrates and promote their folding.
Recent in vitro work has illuminated the molecular determinants of substrate interaction with the apical domains of TRiC subunits. Using known subunit-substrate pairs, Joachimiak and colleagues have demonstrated that substrate motifs are recognized by a cleft formed between Helix 11 (H11) and a proximal loop in the TRiC apical domains (Figure 2B) [48]. In addition, the subunit arrangement recently has been identified with a combinatorial approach that employed X-ray crystallography and chemical crosslinking mass spectrometry as well as bioinformatics [35,36,54] (Figure 2A). The subunit arrangement of TRiC leads to the spatial partitioning of subunits with different chemical properties. Specifically, subunits are segregated by their ATP-binding affinities (High affinity subunit: CCT1,2,4,5, Low affinity subunit: CCT3,6,7,8) [55]. Thus, the hetero-oligomeric nature of TRiC generates chemically asymmetric features, which likely provide the basis for the unique ability of TRiC to fold specific substrates [56,57]. The meaning of this asymmetric nucleotide usage and allosteric mechanism in the context of protein folding remains an area of ongoing research [58].

5. Summary

It is clear that chaperones are critical mediators of oncogenesis. In this review, we provide a brief introductory overview on the role of HSPs in cancer before focusing on the chaperonin TRiC. We discuss how TRIC activity is linked to oncogenesis through its clients—oncoproteins and tumor suppressor proteins—that have well-established roles in cancer. The examples we highlight indicate that TRiC may play an important role in oncogenesis by modulating cancer cell growth, apoptosis, and genome instability. Major advances have been made in clarifying how TRiC folds its substrates, but additional work is necessary to elucidate the mechanisms of TRiC substrate recognition, which could be exploited to develop strategies for identifying new cancer therapies. In addition, because TRiC is required for the proper folding of ~10% of the proteome, a systematic approach to the identification of TRiC substrates that contribute to the many different types of cancer will be challenging Thus, development of new methodologies and further experimental studies are warranted to increase our understanding of the role TRiC in cancer development and progression.

Acknowledgments

This research has been supported by NIH grants (P41GM103832 and PN2EY016525) and Cancer Prevention and Research Institute of Texas grant (RP110291).

Author Contributions

Soung-Hun Roh, Moses Kasembeli, Deenadayalan Bakthavatsalam, Wah Chiu and David J. Tweardy wrote the manuscript.

Conflicts of Interest

The authors declare no conflict of interest.

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