Valence Topological Charge-Transfer Indices for Dipole Moments
Introduction
Topological charge-transfer indices
) [22,23,24] and the distance (
) matrices, wherein Dij = Iij if i=j, “0” otherwise; lij is the shortest edge count between vertices i and j [25]. In
, Aij = 1 if vertices i and j are adjacent, “0” otherwise. The
matrix is the matrix whose elements are the squares of the reciprocal distances
[26]. Now, the intermediate matrix
is defined as the matrix product of
by
:
is defined as
, where
is the transpose of
[27]. By agreement, Cii = Mii. For i ≠ j, the Cij terms represent a measure of the intramolecular net charge transferred from atom j to i.
matrix, and δ is the Kronecker δ, being δ = 1 for i = j and δ = 0 for i ≠ j. Gk represents the sum of all the Cij terms, for every pair of vertices i and j at topological distance k. Gálvez et al. also introduced other topological charge-transfer index, Jk, as
in space. This vector has magnitude μe, lies in the edge e connecting vertices i and j, and its direction is from j to i. The molecular dipole moment vector results the vector sum of the edge dipole moments as
:
.- 1.
- Read the Cartesian coordinates of the atoms.
- 2.
- Determine which atoms are bonded to which other atoms. The distance between two atoms is calculated and, if it is less than a certain value, a bond is assumed to exist between the two atoms.
- 3.
- Build the charge transfer terms Cij.
- 4.
- Calculate the vector semisum dipole moment μvec.
Valence charge-transfer indices for heteroatoms
. For each heteroatom X, its entry Aii is redefined as
matrix, where xx and xc are the electronegativities of heteroatom X and carbon, respectively, in Pauling units. Notice that the subtractive term keeps
for the carbon atom (Equation 5). Moreover, the multiplicative factor reproduces
for oxygen, which was taken as standard in previous works. From the modified
matrix, the valence
and
matrices,
,
and topological charge-transfer indices
and
can be calculated by following the former procedure with the
matrix. The
,
and
descriptors are graph invariants. The main difference between μvec and
is that μvec is sensitive only to the steric effect of the heteroatoms while is sensitive to both electronic and steric effects.Calculation results and discussion
and
(with k < 6) for a series of 13 phenyl alcohols (8 form a homologous series and 5 are congeneric) are reported in Table 1. In the homologous series, G1 and G2 are sensitive to the presence of the alkyl chain. G3, G4 and G5 indicate the presence of at least 2, 3 and 4 carbon atoms in the alkyl chain, respectively.
is influenced by the presence of the alkyl chain.
–
point out the presence of at least 2–5 carbon atoms in the alkyl chain.| Molecule | N | G1 | G2 | G3 | G4 | G5 | ||||
| Phenol | 7 | 2.0000 | 0.8889 | 0.3750 | 0.2222 | 0.0000 | ||||
| benzyl alcohol | 8 | 1.2500 | 6.7778 | 0.8125 | 0.4133 | 0.1250 | ||||
| 2-phenyl-1-ethanol | 9 | 1.2500 | 6.7778 | 0.8750 | 0.5644 | 0.2431 | ||||
| 3-phenyl-1-propanol | 10 | 1.2500 | 6.7778 | 0.8750 | 0.6044 | 0.3333 | ||||
| 4-phenyl-1-butanol | 11 | 1.2500 | 6.7778 | 0.8750 | 0.6044 | 0.3611 | ||||
| 5-phenyl-1-pentanol | 12 | 1.2500 | 6.7778 | 0.8750 | 0.6044 | 0.3611 | ||||
| 6-phenyl-1-hexanol | 13 | 1.2500 | 6.7778 | 0.8750 | 0.6044 | 0.3611 | ||||
| 7-phenyl-1-heptanol | 14 | 1.2500 | 6.7778 | 0.8750 | 0.6044 | 0.3611 | ||||
| 1-phenyl-2-propanol | 10 | 2.2500 | 6.7778 | 0.9375 | 0.7156 | 0.3611 | ||||
| 2-phenyl-2-propanol | 10 | 2.7500 | 7.2222 | 1.5625 | 0.7956 | 0.3750 | ||||
| 3-phenyl-2-propen-1-ol | 10 | 1.2500 | 8.2222 | 0.8750 | 0.4844 | 0.2708 | ||||
| 1-phenyl-1-pentanol | 12 | 1.7500 | 7.1111 | 1.3125 | 0.8756 | 0.4861 | ||||
| 1-phenyl-2-pentanol | 12 | 2.2500 | 7.0000 | 1.0625 | 0.7556 | 0.4792 | ||||
| Molecule | J1 | J2 | J3 | J4 | J5 | |||||
| phenol | 0.3333 | 0.1481 | 0.0625 | 0.0370 | 0.0000 | |||||
| benzyl alcohol | 0.1786 | 0.9683 | 0.1161 | 0.0590 | 0.0179 | |||||
| 2-phenyl-1-ethanol | 0.1563 | 0.8472 | 0.1094 | 0.0706 | 0.0304 | |||||
| 3-phenyl-1-propanol | 0.1389 | 0.7531 | 0.0972 | 0.0672 | 0.0370 | |||||
| 4-phenyl-1-butanol | 0.1250 | 0.6778 | 0.0875 | 0.0604 | 0.0361 | |||||
| 5-phenyl-1-pentanol | 0.1136 | 0.6162 | 0.0795 | 0.0549 | 0.0328 | |||||
| 6-phenyl-1-hexanol | 0.1042 | 0.5648 | 0.0729 | 0.0504 | 0.0301 | |||||
| 7-phenyl-1-heptanol | 0.0962 | 0.5214 | 0.0673 | 0.0465 | 0.0278 | |||||
| 1-phenyl-2-propanol | 0.2500 | 0.7531 | 0.1042 | 0.0795 | 0.0401 | |||||
| 2-phenyl-2-propanol | 0.3056 | 0.8025 | 0.1736 | 0.0884 | 0.0417 | |||||
| 3-phenyl-2-propen-1-ol | 0.1389 | 0.9136 | 0.0972 | 0.0538 | 0.0301 | |||||
| 1-phenyl-1-pentanol | 0.1591 | 0.6465 | 0.1193 | 0.0796 | 0.0442 | |||||
| Molecule | ![]() | ![]() | ![]() | ![]() | ![]() | |||||
| phenol | 2.2000 | 1.1000 | 0.3639 | 0.0847 | 0.0000 | |||||
| benzyl alcohol | 2.9500 | 6.6611 | 0.5625 | 0.2533 | 0.0370 | |||||
| 2-phenyl-1-ethanol | 2.9500 | 7.1056 | 0.7444 | 0.4044 | 0.1319 | |||||
| 3-phenyl-1-propanol | 2.9500 | 7.1056 | 0.9944 | 0.5019 | 0.2222 | |||||
| 4-phenyl-1-butanol | 2.9500 | 7.1056 | 0.9944 | 0.6619 | 0.2824 | |||||
| 5-phenyl-1-pentanol | 2.9500 | 7.1056 | 0.9944 | 0.6619 | 0.3936 | |||||
| 6-phenyl-1-hexanol | 2.9500 | 7.1056 | 0.9944 | 0.6619 | 0.3936 | |||||
| 7-phenyl-1-heptanol | 2.9500 | 7.1056 | 0.9944 | 0.6619 | 0.3936 | |||||
| 1-phenyl-2-propanol | 3.4500 | 7.6556 | 0.8069 | 0.5556 | 0.2500 | |||||
| 2-phenyl-2-propanol | 3.4500 | 8.2056 | 1.3125 | 0.6356 | 0.2870 | |||||
| 3-phenyl-2-propen-1-ol | 2.9500 | 8.3278 | 0.6306 | 0.3819 | 0.1597 | |||||
| 1-phenyl-1-pentanol | 2.9500 | 7.3222 | 1.1819 | 0.7731 | 0.4861 | |||||
| Molecule | ![]() | ![]() | ![]() | ![]() | ![]() | |||||
| phenol | 0.3637 | 0.1833 | 0.0606 | 0.0141 | 0.0000 | |||||
| benzyl alcohol | 0.4214 | 0.9516 | 0.0804 | 0.0362 | 0.0053 | |||||
| 2-phenyl-1-ethanol | 0.3688 | 0.8882 | 0.0931 | 0.0506 | 0.0165 | |||||
| 3-phenyl-1-propanol | 0.3278 | 0.7895 | 0.1105 | 0.0558 | 0.0247 | |||||
| 4-phenyl-1-butanol | 0.2950 | 0.7106 | 0.0994 | 0.0662 | 0.0282 | |||||
| 5-phenyl-1-pentanol | 0.2682 | 0.6460 | 0.0904 | 0.0602 | 0.0358 | |||||
| 6-phenyl-1-hexanol | 0.2458 | 0.5921 | 0.0829 | 0.0552 | 0.0328 | |||||
| 7-phenyl-1-heptanol | 0.2269 | 0.5466 | 0.0765 | 0.0509 | 0.0303 | |||||
| 1-phenyl-2-propanol | 0.3833 | 0.8506 | 0.0897 | 0.0617 | 0.0278 | |||||
| 2-phenyl-2-propanol | 0.3833 | 0.9117 | 0.1458 | 0.0706 | 0.0319 | |||||
| 3-phenyl-2-propen-1-ol | 0.3278 | 0.9253 | 0.0701 | 0.0424 | 0.0177 | |||||
| 1-phenyl-1-pentanol | 0.2682 | 0.6657 | 0.1074 | 0.0703 | 0.0442 | |||||
| 1-phenyl-2-pentanol | 0.3136 | 0.6960 | 0.0956 | 0.0666 | 0.0335 | |||||
) are listed in Table 2. As experimental values are not available for all the series, some reference values are calculated with program MOPAC-AM1. The reliability of the results has been tested with the first four entries in Table 2, for which experimental data are available. AM1 calculations adequately reproduce the oscillatory behaviour of the experimental data, mimicking two minima for phenol and 2-phenyl-1-ethanol and two maxima for benzyl alcohol and 3-phenyl-1-propanol. This test suggests that AM1 allows a good approximation, at least for the general performance of the homologous series as a whole, and that the error is sufficiently constant throughout the homologous series. The number of compounds in the homologous series has not been increased because longer phenyl alcohols are not percutaneous enhancers owing to their lower transdermal penetration. In particular, 3-phenyl-2-propen-1-ol has been chosen in order to compare the influence of a double bound in the alkyl chain region of a phenyl alcohol. The experimental μ decreases ca. 3% from that of 3-phenyl-1-propanol due to the presence of the double bond. The presence of an enol group (conjugated double bond in β position with respect to the -OH group) lends 3-phenyl-2-propen-1-ol to particular structural characteristics (greater rigidity than for 3-phenyl-1-propanol) with a lower μ. For the three phenyl propanols, μexperiment decreases 5% from 3-phenyl-1-propanol (primary alcohol) to 1-phenyl-2-propanol (secondary alcohol) and 11% to 2-phenyl-2-propanol (tertiary alcohol). For the three phenyl pentanols, μexperiment increases 7% from 5-phenyl-1-pentanol (primary alcohol) to 1-phenyl-1-pentanol (secondary alcohol with both –phenyl and –OH groups in terminal position) and decreases 8% to 1-phenyl-2-pentanol (secondary alcohol).| Molecule | Number of carbon atoms in alkyl chain | Vector semisum | Valence vector semisum | Experimenta |
|---|---|---|---|---|
| phenol | 0 | 0.737 | 2.431 | 1.400 (1.233b) |
| benzyl alcohol | 1 | 0.589 | 2.487 | 1.700 (1.568b) |
| 2-phenyl-1-ethanol | 2 | 0.700 | 2.257 | 1.590 (1.497b) |
| 3-phenyl-1-propanol | 3 | 0.573 | 2.519 | 1.640 (1.597b) |
| 4-phenyl-1-butanol | 4 | 0.702 | 2.249 | 1.345b |
| 5-phenyl-1-pentanol | 5 | 0.573 | 2.519 | 1.626b |
| 6-phenyl-1-hexanol | 6 | 0.702 | 2.250 | 1.346b |
| 7-phenyl-1-heptanol | 7 | 0.573 | 2.518 | 1.634b |
| 1-phenyl-2-propanol | 3 | 0.923 | 2.347 | 1.564b |
| 2-phenyl-2-propanol | 3 | 0.780 | 2.821 | 1.463b |
| 3-phenyl-2-propen-1-ol | 3 | 0.561 | 2.495 | 1.591b |
| 1-phenyl-1-pentanol | 5 | 0.426 | 2.794 | 1.746b |
| 1-phenyl-2-pentanol | 5 | 0.895 | 2.367 | 1.496b |
vary in an alternate fashion: for odd n, μ is greater than for even n. However, μvec presents the opposite tendency. As μvec is not sensitive to the electronic effect of the oxygen atom, it is clear that the steric (μvec) and electronic (
) factors are antagonistic, and that the electronic effect dominates over the steric one. The μexperiment decreases ca. 4% either from to 6 or from to 7.
) indices is representative of charge-transfer processes and clearly conditions the polar character of the correlated compounds. The best non-linear model for μ does not improve the results.
is included in the model, the best linear regression for μ results:
results:
–
pairs is observed in Equations 6–10. This diminishes the risk of co-linearity in the fit, given the close relationship between each pair Gk, Jk in Equation 2 [33].| n | Equation 6 | Equation 7 | Equation 8 | Equation 9 | Equation 10 |
|---|---|---|---|---|---|
| 1 | 0.477 | 0.834 | 0.915 | 0.823 | 0.956 |
| 2 | – | 0.827 | 0.916 | 0.821 | 0.954 |
| 3 | – | 0.819 | 0.916 | 0.821 | 0.951 |
| 4 | – | 0.806 | 0.915 | 0.820 | 0.935 |
| 5 | – | – | 0.890 | 0.823 | -0.951 |
is the i-th element of charge at the point
relative to an origin fixed at the centre of mass in the molecule [35]. The δab stands for the Kronecker δ. The subscripts a, b… denote vector or tensor components and can be equal to the Cartesian components x, y, z. Tensor Θ is calculated with our program POLAR [36,37]. The fractal dimension D of the solvent-accessible surface As of the phenyl alcohols may then be obtained according to Lewis and Rees as

and
(in kJ·mol-1) are the standard-state free energies of solvation of a given solute considered in 1-octanol and water, respectively. The solvation energies are calculated with our program SCAP [50,51,52,53,54,55]. A non-linear model for of the homologous phenyl alcohols vs. fractal dimension is illustrated in Figure 3.


Conclusions
- 1
- Inclusion of the oxygen atom in the π-electron system is beneficial for the description of the dipole moment, owing to either the role of the additional p orbitals provided by the heteroatom or the role of steric factors in the π-electron conjugation. The analysis of both electronic and steric factors in μ caused by the presence of the oxygen atom shows that the two factors are antagonistic, and that the electronic factor dominates over the steric one.
- 2
- In 3-phenyl-2-propen-1-ol, the double bond in the side chain lends to a more rigid structure with a lower dipole moment.
- 3
- Linear and non-linear correlation models have been obtained for the molecular dipole moments of phenyl alcohols. The new μvec and
charge-transfer indices have improved the multivariable regression equations for μ, diminishing the risk of co-linearity in the fit.
- 4
- The linear correlation between D and Θ, and various non-linear correlations between D, log P, log 1/C and HLB point not only to a homogeneous molecular structure of the phenyl alcohols but also to the ability to predict and tailor drug properties. The latter is nontrivial in pharmacology.
Acknowledgements
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Torrens, F. Valence Topological Charge-Transfer Indices for Dipole Moments. Molecules 2003, 8, 169-185. https://doi.org/10.3390/80100169
Torrens F. Valence Topological Charge-Transfer Indices for Dipole Moments. Molecules. 2003; 8(1):169-185. https://doi.org/10.3390/80100169
Chicago/Turabian StyleTorrens, Francisco. 2003. "Valence Topological Charge-Transfer Indices for Dipole Moments" Molecules 8, no. 1: 169-185. https://doi.org/10.3390/80100169
APA StyleTorrens, F. (2003). Valence Topological Charge-Transfer Indices for Dipole Moments. Molecules, 8(1), 169-185. https://doi.org/10.3390/80100169





