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18 pages, 1311 KiB  
Review
Bite by Bite: How Ungulate Browsing Shapes North America’s Forest Future
by Darius Hardalau, Vladut Stefanescu, Mindaugas Bakševičius, Michael Manton, Charles Ruffner, Gediminas Brazaitis, Georgeta Ionescu and Ovidiu Ionescu
Forests 2025, 16(7), 1079; https://doi.org/10.3390/f16071079 - 28 Jun 2025
Viewed by 426
Abstract
Ungulate browsing represents a contemporary issue for forest development, influencing forest regeneration, composition, and management practices across the world, especially in North America. This review synthesizes findings from 101 studies conducted between 1980 and 2025 to examine patterns of herbivory damage through browsing [...] Read more.
Ungulate browsing represents a contemporary issue for forest development, influencing forest regeneration, composition, and management practices across the world, especially in North America. This review synthesizes findings from 101 studies conducted between 1980 and 2025 to examine patterns of herbivory damage through browsing by moose, elk, white-tailed deer, black-tailed deer, and bison. Despite regional variation, high ungulate density consistently emerges as the primary factor driving browsing intensity and ecological and economic impact, leading to decreased social acceptance of coexistence with ungulates. This review highlights the selective suppression of palatable species such as balsam fir, red oak, and white cedar, leading to shifts toward less-preferred conifers. Preventive and control measures, ranging from fencing and repellents to regulated hunting, are widely implemented but vary in effectiveness and social acceptability. Although predator presence is an evident controlling factor, it was not statistically associated in this review with reduced browsing, nor with behavioral or trophic cascade effects. Ultimately, this study underscores the importance of integrated management strategies that combine silvicultural adaptation, population control, and, where feasible, predator reintroduction to ensure forest resilience and sustainability in the face of increasing pressure from climate change. Full article
(This article belongs to the Special Issue Biodiversity and Ecosystem Functions in Forests)
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22 pages, 2684 KiB  
Article
Impact of the Wood Species Used on the Chemical Composition, Color and Sensory Characteristics of Wine
by Ana María Martínez-Gil, Maria del Alamo-Sanza, María Asensio-Cuadrado, Rubén del Barrio-Galán and Ignacio Nevares
Foods 2025, 14(12), 2088; https://doi.org/10.3390/foods14122088 - 13 Jun 2025
Viewed by 466
Abstract
In recent decades, the use of wood pieces has been promoted as a viable alternative to barrels to improve the quality of white wines. However, most available studies have focused on red wines. Given that white and red wines present significant oenological differences [...] Read more.
In recent decades, the use of wood pieces has been promoted as a viable alternative to barrels to improve the quality of white wines. However, most available studies have focused on red wines. Given that white and red wines present significant oenological differences that affect their development and final characteristics, it is necessary to expand research specifically to the case of white wines. For this reason, this study evaluates the impact of using pieces of traditional oak wood (Quercus petraea (two origins: French and Romanian) and Quercus alba), other oaks (Quercus humboldtti and Quercus candicans) and other genera (Robinia pseudoacacia, Acacia dealbata, Prunus avium and Nothofagus pumilio) on the quality of white wine during the short period of contact with the wood. The results show that aging with the different woods has little effect on the oenological parameters of the wine; however, it does lead to a change in the phenolic composition and in the final chromatic characteristics of the white wines. From a sensory point of view, the wines showed different sensory profiles depending on the type of wood used. In general, the tasting panel preferred the white wine aged with French Quercus petraea wood pieces, followed by the wine aged with Quercus humboldtti wood pieces and the wine aged with Robinia speudoacacia wood pieces. This research improves our understanding of the potential impact of using pieces of different woods in white wines, describing the potential interest of some that have not been studied before, such as Quercus humboldtti. Full article
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15 pages, 2854 KiB  
Article
A Novel Linear Evaluation of Chromatographic Peak Features in Pharmacopoeias Using an Inverse Fourier Transform Algorithm
by Shuping Chen, Weiyuan Zhu, Sai Huang and Baoling Zheng
Biophysica 2025, 5(2), 21; https://doi.org/10.3390/biophysica5020021 - 2 Jun 2025
Viewed by 588
Abstract
The system suitability testing of chromatography is an indispensable procedure in pharmaceutical analysis, and it must comply with rules in related pharmacopoeias. An inverse Fourier transform algorithm was developed to accurately evaluate chromatographic features versus a standard Gaussian peak shape. The regular chromatogram [...] Read more.
The system suitability testing of chromatography is an indispensable procedure in pharmaceutical analysis, and it must comply with rules in related pharmacopoeias. An inverse Fourier transform algorithm was developed to accurately evaluate chromatographic features versus a standard Gaussian peak shape. The regular chromatogram is considered a pseudo-frequency spectrum and can be converted to a nominal time signal via inverse Fourier transformation. The system suitability parameters of peak width, theoretical plate number, tailing factor, and noise testing were evaluated using linear regressions directly and compared with the compendial rules. This novel method is simple, accurate, robust, reliable, and efficient for the evaluation of chromatographic peak features. Full article
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16 pages, 3651 KiB  
Article
Predicting Organic Acid Variation in White Wine Malolactic Fermentation Using a Logistic Model
by Aikaterini Karampatea, Adriana Skendi, Maria Manoledaki and Elisavet Bouloumpasi
Fermentation 2025, 11(5), 288; https://doi.org/10.3390/fermentation11050288 - 15 May 2025
Viewed by 731
Abstract
The variation in organic acids during malolactic fermentation (MLF) affects the wine’s quality, presenting a challenge for the wine industry. This study aimed to investigate the kinetics of organic acids during MLF using two Oenococcus oeni strains under different barrel conditions. The study [...] Read more.
The variation in organic acids during malolactic fermentation (MLF) affects the wine’s quality, presenting a challenge for the wine industry. This study aimed to investigate the kinetics of organic acids during MLF using two Oenococcus oeni strains under different barrel conditions. The study examined the variation in pH, total and volatile acidity, and concentration of tartaric, malic, lactic, and citric acid during MLF in the identical initial wine. In addition, the aromatic profile of the final wines was evaluated. The fermentation occurred in new and used French oak barrels. Two strains of O. oeni were used: (a) citrate-negative O. oeni (CINE) and (b) O. oeni, commonly used in the wine industry. The experimental data obtained were fitted to the logistic model for each monitored parameter. The degree of fitting R2 was higher than 92.79%, indicating good predictive accuracy for substrate consumption (malic and citric acid), as well as product formation (lactic and acetic acid). The mean values of O. oeni and O. oeni CINE differ in acetic (0.29 and 0.15 g/L) and citric acid (0.13 and 0.18 g/L), respectively. The logistic model effectively predicted the change in acid content during fermentation, describing the changes in organic acid levels during the MLF conducted in barrels. Modeling can be useful in forecasting industrial-scale production. Full article
(This article belongs to the Special Issue Lactic Acid Bacteria Metabolism)
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22 pages, 1289 KiB  
Article
Influence of Gall-Inducing Insects (Cynipini) on the Nutritional and Defensive Chemical Profile of Quercus rugosa
by Miriam Serrano-Muñoz, Elgar Castillo-Mendoza, Alejandro Zamilpa, Patricia Mussali-Galante, Juli Pujade-Villar, Leticia Valencia-Cuevas and Efraín Tovar-Sánchez
Diversity 2025, 17(4), 288; https://doi.org/10.3390/d17040288 - 18 Apr 2025
Viewed by 406
Abstract
Analyzing the nutritional and defensive chemistry of Quercus rugosa provides insight into gall wasp interactions. Quercus rugosa is the most widely distributed white oak species in Mexico. It is the dominant canopy species in its geographic distribution range and has the largest number [...] Read more.
Analyzing the nutritional and defensive chemistry of Quercus rugosa provides insight into gall wasp interactions. Quercus rugosa is the most widely distributed white oak species in Mexico. It is the dominant canopy species in its geographic distribution range and has the largest number of associated gall wasp species (Cynipidae: Cynipini). Our main aims were to characterize the nutritional and defensive chemistry of Q. rugosa leaves and determine whether this chemistry differed between leaves with and without galls. We evaluated 60 trees from six populations of Q. rugosa in central Mexico. For each tree, we analyzed the nutritional chemistry (nitrogen, phosphorus, carbon, and carbon/nitrogen ratio) and defensive chemistry (secondary metabolites). Also, we characterized the community of cynipids in the leaf tissue of each tree. We documented 18 cynipid species, and the cynipid communities differed in composition among localities. We recorded the presence of a total of ten phenolics. The composition of nutritional and defensive chemicals differed significantly between leaves with and without galls in each locality. The nutritional and defensive chemical compounds of Q. rugosa were influenced by their associated cynipids. Our results suggest that gall-inducing cynipids influence the production of secondary metabolites in leaves with galls through the reassignment of nutritional compounds by the hosts. Full article
(This article belongs to the Section Biodiversity Conservation)
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10 pages, 7283 KiB  
Article
Predicting Timber Board Foot Volume Using Forest Landscape Model and Allometric Equations Integrating Forest Inventory Data
by Justin Dijak, Hong He and Jacob Fraser
Forests 2025, 16(3), 543; https://doi.org/10.3390/f16030543 - 19 Mar 2025
Viewed by 332
Abstract
In this study, we present a methodology for predicting timber board foot volume using a forest landscape model, incorporating allometric equations and forest inventory data. The research focuses on the Ozark Plateau, a 48,000-square-mile region characterized by productive soils and varied precipitation. To [...] Read more.
In this study, we present a methodology for predicting timber board foot volume using a forest landscape model, incorporating allometric equations and forest inventory data. The research focuses on the Ozark Plateau, a 48,000-square-mile region characterized by productive soils and varied precipitation. To simulate timber volume, we used the LANDIS PRO forest landscape model, initialized with forest composition data derived from the USDA Forest Service’s Forest Inventory and Analysis (FIA) plots. The model accounted for species-specific growth rates and was run from the year 2000 to 2100 at five-year intervals. Timber volume estimates were calculated using both quadratic mean diameter (QMD) and tree diameter in the Hahn and Hansen board foot volume equation. These estimates were compared across different forest types—deciduous, coniferous, and mixed stands—and verified against FIA plot data using a paired permutation test. Results showed high correlations between QMD and tree diameter methods, with a slightly lower volume estimate from the QMD approach. Projections indicate significant increases in board foot volume for key species groups such as red oak and white oak while showing declines toward the end of the model period in groups like shortleaf pine due to age-related mortality and regeneration challenges. The model’s estimates closely align with state-level FIA data, underscoring the effectiveness of the integrated approach. The study highlights the utility of integrating landscape models and forest inventory data to predict timber volume over time, offering valuable insights for forest management and policy planning. Full article
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21 pages, 1725 KiB  
Article
Ganoderma lucidum Immobilized on Wood Demonstrates High Persistence During the Removal of OPFRs in a Trickle-Bed Bioreactor
by Shamim Tayar, Javier Villagra, Núria Gaju, Maira Martínez-Alonso, Eduardo Beltrán-Flores and Montserrat Sarrà
J. Fungi 2025, 11(2), 85; https://doi.org/10.3390/jof11020085 - 22 Jan 2025
Cited by 2 | Viewed by 1104
Abstract
Emerging pollutants such as organophosphate flame retardants (OPFRs) pose a critical threat to environmental and human health, while conventional wastewater treatments often fail to remove them. This study addresses this issue by evaluating the bioremediation potential of white-rot fungi for the removal of [...] Read more.
Emerging pollutants such as organophosphate flame retardants (OPFRs) pose a critical threat to environmental and human health, while conventional wastewater treatments often fail to remove them. This study addresses this issue by evaluating the bioremediation potential of white-rot fungi for the removal of two OPFRs: tris(2-chloroethyl) phosphate (TCEP) and tributyl phosphate (TBP). Three fungal species—Ganoderma lucidum, Trametes versicolor, and Phanerochaete velutina—were screened for their degradation capabilities. Among these, G. lucidum and T. versicolor demonstrated removal efficiencies exceeding 99% for TBP, while removal rates for TCEP were significantly lower, with a maximum of 30%. The exploration of the enzyme role showed that cytochrome P450 is involved in the degradation while the extracellular laccase is not involved. Continuous batch experiments were performed using a trickle-bed reactor (TBR) operating under non-sterile conditions, a setting that closely resembles real-world wastewater treatment environments. G. lucidum was immobilized on oak wood chips, and the removal efficiencies were measured to be 85.3% and 54.8% for TBP and TCEP, respectively, over 10 cycles. Microbial community analysis showed that G. lucidum remained the dominant species in the reactor. These findings demonstrate the efficacy of fungal-based trickle-bed bioreactors, offering a sustainable and efficient alternative for addressing environmental pollution caused by highly recalcitrant pollutants. Full article
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25 pages, 2988 KiB  
Article
White Oaks Genetic and Chemical Diversity Affect the Community Structure of Canopy Insects Belonging to Two Trophic Levels
by Elgar Castillo-Mendoza, Leticia Valencia-Cuevas, Patricia Mussali-Galante, Fernando Ramos-Quintana, Alejandro Zamilpa, Miriam Serrano-Muñoz, Juli Pujade-Villar and Efraín Tovar-Sánchez
Diversity 2025, 17(1), 62; https://doi.org/10.3390/d17010062 - 17 Jan 2025
Cited by 1 | Viewed by 929
Abstract
The hybridization phenomenon increases genetic diversity and modifies recombinant individuals’ secondary metabolite (SMs) content, affecting the canopy-dependent community. Hybridization events occur when Quercus rugosa and Q. glabrescens oaks converge in sympatry. Here, we analyzed the effect of the genetic diversity (He) [...] Read more.
The hybridization phenomenon increases genetic diversity and modifies recombinant individuals’ secondary metabolite (SMs) content, affecting the canopy-dependent community. Hybridization events occur when Quercus rugosa and Q. glabrescens oaks converge in sympatry. Here, we analyzed the effect of the genetic diversity (He) and SMs of Q. rugosa, Q. glabrescens and hybrids on the community of gall-inducing wasps (Cynipidae) and their parasitoids on 100 oak canopy trees in two allopatric and two hybrid zones. Eighteen gall wasp species belonging to six genera and six parasitoid genera contained in four families were identified. The most representative parasitoid genera belonged to the Chalcidoidea family. Abundance, infestation levels and richness of gall wasps and their parasitoids registered the next pattern: Q. rugosa higher than the hybrids, and the hybrids equal to Q. glabrescens. Oak host genetic diversity was the variable with the highest influence on the quantitative SMs expression, richness and abundance of gall wasps and their parasitoids. The influence of SMs on gall wasps and their parasitoids showed the next pattern: scopoletin > quercitrin > rutin = caffeic acid = quercetin glucoside. Our findings indicate that genetic diversity may be a key factor influencing the dynamics of tri-trophic interactions that involve oaks. Full article
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17 pages, 7684 KiB  
Article
Effects of Light Intensity and Irrigation Method on Growth, Quality, and Anthocyanin Content of Red Oak Lettuce (Lactuca sativa var. cripspa L.) Cultivated in a Plant Factory with Artificial Lighting
by Thanit Ruangsangaram, Pariyanuj Chulaka, Kriengkrai Mosaleeyanon, Panita Chutimanukul, Michiko Takagaki and Na Lu
Horticulturae 2025, 11(1), 75; https://doi.org/10.3390/horticulturae11010075 - 12 Jan 2025
Viewed by 1554
Abstract
Cultivating red oak lettuce in plant factories often encounters challenges in achieving the desired red leaf coloration. To make the leaves a pleasant red color, anthocyanins are key substances that need to be induced. This study aimed to evaluate the effects of increasing [...] Read more.
Cultivating red oak lettuce in plant factories often encounters challenges in achieving the desired red leaf coloration. To make the leaves a pleasant red color, anthocyanins are key substances that need to be induced. This study aimed to evaluate the effects of increasing light intensity and irrigation methods on the growth and leaf color of red oak lettuce in a controlled environment. Two light intensities (300 and 400 µmol m−2 s−1) with white LEDs and two irrigation methods (circulating vs. non-circulating irrigation) were applied seven days before harvesting. The results indicated that plants grown with circulating irrigation exhibited significantly higher fresh and dry weights than those grown under non-circulating conditions, regardless of light intensity. When non-circulating irrigation was applied, shoot fresh weight decreased by approximately 22% on the harvesting day compared to the circulating treatments. Under the 400 µmol m−2 s−1 light intensity with non-circulating irrigation (400N-C), plants displayed the lowest lightness (L*) at 40.7, increased redness (a*) to −7.4, and reduced yellowness (b*) to 11.0. These changes in coloration were optimized by day 5 after treatment. Additionally, spectral indices, including normalized difference vegetation index and photochemical reflectance index, varied significantly among treatments. The 400N-C treatment also resulted in the highest anthocyanin content and antioxidant activity in red oak lettuce. These findings suggest that combining high light intensity with non-circulating irrigation before harvest can improve both the coloration and quality of red oak lettuce in plant factories with artificial lighting. Full article
(This article belongs to the Special Issue Advances in Sustainable Cultivation of Horticultural Crops)
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21 pages, 8678 KiB  
Article
First Results of a Geometric Morphometric Analysis of the Leaf Size and Shape Variation in Quercus petraea Across a Wide European Area
by Paola Fortini, Elisa Proietti, Srdjan Stojnic, Piera Di Marzio, Filippos A. Aravanopoulos, Raquel Benavides, Anna Loy and Romeo Di Pietro
Forests 2025, 16(1), 70; https://doi.org/10.3390/f16010070 - 4 Jan 2025
Viewed by 1946
Abstract
The high leaf morphological variability of European white oaks is largely documented in the botanical literature, and several papers have been published in the last two decades focusing on inter- and intraspecific leaf phenotypic plasticity. Studies involving landmark-based geometric morphometrics proved to be [...] Read more.
The high leaf morphological variability of European white oaks is largely documented in the botanical literature, and several papers have been published in the last two decades focusing on inter- and intraspecific leaf phenotypic plasticity. Studies involving landmark-based geometric morphometrics proved to be useful in highlighting relationships between leaf size and shape variation and environmental factors, phylogenetic patterns, or hybridization events. In this paper, the leaf size and shape variations of 18 populations of Quercus petraea distributed throughout a wide geographical area were analyzed by means of geometric morphometric methods (GMMs). This study involved 10 European countries and investigated the intraspecific leaf variability of Q. petraea within a wide latitudinal and longitudinal gradient. Analyses of variance for shape and centroid size were performed through Procrustes ANOVA. Multivariate analysis procedures, partial least squares method, and regression analyses were used to highlight possible patterns of covariation between leaf shape and size and geographical/environmental variables. The results revealed that the Q. petraea populations analyzed mainly differed in their leaf size, where a decrease was observed according to a north to south geographical gradient. Both leaf size and shape were found to be significantly related to latitude, and, to a lesser extent, to mean annual temperature and the leaf isotopic signature of 15N. All the other variables considered did not provide significant results. Unexpected differences observed comparing the leaf traits of geographically strictly adjacent populations suggest the involvement of local hybridization/introgression events. However, with a few exceptions, Q. petraea turned out to be quite conservative in its leaf shape and size at both the local and continental scale. Full article
(This article belongs to the Section Forest Biodiversity)
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15 pages, 9198 KiB  
Article
Comparative Study of Numerical Simulation on Short-Term Creep Behavior of Steam-Pretreated White Oak (Quercus alba L.) Wood
by Xingying Zhang, Junjie Cen, Yuge Zhang, Shenjie Han, Kongjie Gu, Youming Yu and Junfeng Hou
Forests 2024, 15(12), 2166; https://doi.org/10.3390/f15122166 - 9 Dec 2024
Cited by 1 | Viewed by 826
Abstract
This paper investigates the effects of steam pretreatment temperature (100~120 °C), test temperature (20~80 °C), and earlywood vessel belt on parameters associated with the bending creep properties of white oak (Quercus alba L.) wood. The Burger model, Five-parameter model, and Six-parameter model [...] Read more.
This paper investigates the effects of steam pretreatment temperature (100~120 °C), test temperature (20~80 °C), and earlywood vessel belt on parameters associated with the bending creep properties of white oak (Quercus alba L.) wood. The Burger model, Five-parameter model, and Six-parameter model are used for short-term simulation and comparative analysis of the bending creep curve of steam-pretreated white oak wood, and creep fitting curves and viscoelastic parameters are obtained. The advantages and disadvantages of different viscoelastic mathematical models for fitting the bending creep curve of white oak are analyzed. The results indicate that the Six-parameter model is more consistent with the creep behavior of wood in simulating and predicting the creep behavior of wood than that of the Burger and Five-parameter model and can reflect the short-term deformation characteristics of wood. Full article
(This article belongs to the Special Issue Wood Properties: Strength, Density, Hardness)
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14 pages, 2198 KiB  
Article
Pilot Investigation of Socio-Spatial Relationships in an Ex Situ White Rhino (Ceratotherium simum simum) Bachelor Group
by Lara C. Metrione, Terri L. Roth, Yaraila Rodriguez and Elizabeth W. Freeman
J. Zool. Bot. Gard. 2024, 5(4), 774-787; https://doi.org/10.3390/jzbg5040051 - 6 Dec 2024
Viewed by 1169
Abstract
Nonbreeding white rhino bulls are traditionally housed individually in zoos, but space limitations require the exploration of alternative techniques. There are no studies of group-housed bulls, and the feasibility of managing a bachelor group is unknown. Six bulls (two bulls each of 3-, [...] Read more.
Nonbreeding white rhino bulls are traditionally housed individually in zoos, but space limitations require the exploration of alternative techniques. There are no studies of group-housed bulls, and the feasibility of managing a bachelor group is unknown. Six bulls (two bulls each of 3-, 5-, and 8-yr-olds) in a 3.1 ha enclosure were observed for 30 min each 2×/wk for 20–31 wks. The 3-yr-olds were relocated after the first 20 weeks. Rhino location, nearest neighbor, aggressive behaviors, and dominance interactions were recorded. There was no evidence of habitat spatial segregation. The 3- and 5-yr-olds grouped together by age; 8-yr-olds did not associate as much as younger rhinos. Aggressive vocalizations and physical aggression were infrequent (range 0–1.5/h/bull and 0–1/h/bull, respectively). Eight-year-olds displayed and received aggressive vocalizations the most; three-year-olds displayed and received physical aggression the most. After the 3-yr-olds were removed, the habitat usage and social proximity of the remaining bulls did not change. Aggressive behaviors increased, but vocalizations (range 0.18–3.1/h/bull) remained more frequent than physical aggression (range 0.18–0.73/h/bull). The highest-ranking 8-yr-old engaged in physical altercations the least. The bulls shared space, and the use of vocalizations more than physical aggression deterred injury. These findings indicate that bachelor group management is feasible in a large enclosure with young bulls. Full article
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23 pages, 6434 KiB  
Article
Effects of Deer Browsing on Soil Nutrients and Regeneration Dynamics in a Carolinian Old-Growth Forest of Ontario
by Sarah K. Don, Kenneth A. Anyomi and Susan A. Dudley
Sustainability 2024, 16(23), 10589; https://doi.org/10.3390/su162310589 - 3 Dec 2024
Viewed by 1247
Abstract
Old growth forests are increasingly rare but important carbon sinks which harbour rich biodiversity. Chronic browsing by the white-tailed deer (Odocoileus virginianus) is a threat to the sustainability of the services provided by these forests, particularly in northern temperate forests where [...] Read more.
Old growth forests are increasingly rare but important carbon sinks which harbour rich biodiversity. Chronic browsing by the white-tailed deer (Odocoileus virginianus) is a threat to the sustainability of the services provided by these forests, particularly in northern temperate forests where deer numbers have increased in recent decades (driven by stricter hunting rules and reduced predation) and necessitating local monitoring of vegetation responses. The objective of this study was to determine the effects of deer exclusion on tree regeneration dynamics and soil nutrients in an old growth Carolinian forest. This was performed using exclusion fencing and tip-up mounds at McMaster Forest Nature Preserve and the Sheelah Dunn Dooley Nature Sanctuary in Hamilton Ontario. Tree regeneration was surveyed from thirty 1 m × 1 m quadrats within exclusion plots and another thirty quadrats from deer-browsed areas adjacent to the exclusion plots. Soil samples were taken from each quadrat to analyze browsing impacts on nitrate, phosphate and soil organic matter. Red oak (Quercus rubra) was planted at the top and base of tip-up mounds of varying heights and widths and monitored for deer access and browsing activity. Results show a significantly higher density of woody plants within exclosures compared to non-exclosures (p = 0.0089) and twice more abundance of highly palatable species within the exclosures. However, species richness (p > 0.05) and diversity (p > 0.05) were minimally impacted by deer browsing, showing a resilient old growth forest. Soil nitrate was consistently higher in the non-exclosures, while phosphate was consistently higher within deer exclosures. Finally, more seedlings survived at the top of mounds than the bases, showing the potential of tip-up mounds to be a natural method of deer exclusion and a critical avenue for restoring over-browsed forests. Full article
(This article belongs to the Special Issue Environmental Change and Forest Biodiversity Conservation)
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22 pages, 15117 KiB  
Article
The Transcriptional Program of Staphylococcus aureus Phage K Is Affected by a Host rpoC Mutation That Confers Phage K Resistance
by Rohit Kongari, Melissa D. Ray, Susan M. Lehman, Roger D. Plaut, Deborah M. Hinton and Scott Stibitz
Viruses 2024, 16(11), 1773; https://doi.org/10.3390/v16111773 - 13 Nov 2024
Viewed by 2165
Abstract
To better understand host–phage interactions and the genetic bases of phage resistance in a model system relevant to potential phage therapy, we isolated several spontaneous mutants of the USA300 S. aureus clinical isolate NRS384 that were resistant to phage K. Six of these [...] Read more.
To better understand host–phage interactions and the genetic bases of phage resistance in a model system relevant to potential phage therapy, we isolated several spontaneous mutants of the USA300 S. aureus clinical isolate NRS384 that were resistant to phage K. Six of these had a single missense mutation in the host rpoC gene, which encodes the RNA polymerase β’ subunit. To examine the hypothesis that mutations in the host RNA polymerase affect the transcription of phage genes, we performed RNA-seq analysis on total RNA samples collected from NRS384 wild-type (WT) and rpoCG17D mutant cultures infected with phage K, at different timepoints after infection. Infection of the WT host led to a steady increase of phage transcription relative to the host. Our analysis allowed us to define 53 transcriptional units and to categorize genes based on their temporal expression patterns. Predicted promoter sequences defined by conserved −35, −10, and, in some cases, extended −10 elements, were found upstream of early and middle genes. However, in many cases, sequences upstream of late genes did not contain clear, complete, canonical promoter sequences, suggesting that factors in addition to host RNA polymerase are required for their expression. Infection of the rpoCG17D mutant host led to a transcriptional pattern that was similar to that of the WT at early timepoints. However, beginning at 20 min after infection, transcription of late genes (such as phage structural genes and host lysis genes) was severely reduced. Our data indicate that the rpoCG17D mutation prevents the expression of phage late genes, resulting in a failed infection cycle for phage K. In addition to illuminating the global transcriptional landscape of phage K throughout the infection cycle, this study will inform our investigations into the basis of phage K’s control of its transcriptional program as well as mechanisms of phage resistance. Full article
(This article belongs to the Section Bacterial Viruses)
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12 pages, 1182 KiB  
Article
An Arrhenius-Based Simulation Tool for Predicting Aging of Lithium Manganese Dioxide Primary Batteries in Implantable Medical Devices
by Mahsa Doosthosseini, Mahdi Khajeh Talkhoncheh, Jeffrey L. Silberberg and Hamed Ghods
Energies 2024, 17(21), 5392; https://doi.org/10.3390/en17215392 - 30 Oct 2024
Viewed by 1229
Abstract
This article presents a novel aging-coupled predictive thermo-electrical dynamic modeling tool tailored for primary lithium manganese dioxide (Li-MnO2) batteries in active implantable medical devices (AIMDs). The aging mechanisms of rechargeable lithium batteries are well documented [...] Read more.
This article presents a novel aging-coupled predictive thermo-electrical dynamic modeling tool tailored for primary lithium manganese dioxide (Li-MnO2) batteries in active implantable medical devices (AIMDs). The aging mechanisms of rechargeable lithium batteries are well documented using computationally intensive physics-based models, unsuitable for real-time onboard monitoring in AIMDs due to their high demands. There is a critical need for efficient, less demanding modeling tools for accurate battery health monitoring and end-of-life prediction as well as battery safety assessment in these devices. The presented model in this article simulates the battery terminal voltage, remaining capacity, temperature, and aging during active discharge, making it suitable for real-time health monitoring and end-of-life prediction. We incorporate a first-order dynamic for internal resistance growth, influenced by time, temperature, discharge depth, and load current. By adopting Arrhenius-type kinetics and polynomial relationships, this model effectively simulates the combined impact of these variables on battery aging under diverse operational conditions. The simulation handles both the continuous micro-ampere-level demands necessary for device housekeeping and periodic high-rate pulses needed for therapeutic functions, at a constant ambient temperature of 37 °C, mimicking human body conditions. Our findings reveal a gradual, nonlinear increase in internal resistance as the battery ages, rising by an order of magnitude over a period of 5 years. Sensitivity analysis shows that as the battery ages and load current increases, the terminal voltage becomes increasingly sensitive to internal resistance. Specifically, at defibrillation events, the VR trajectory dramatically increases from 1012 to 108, indicating a fourth-order-of-magnitude enhancement in sensitivity. A model verification against experimental data shows an R2 value of 0.9506, indicating a high level of accuracy in predicting the Li-MnO2 cell terminal voltage. This modeling tool offers a comprehensive framework for effectively monitoring and optimizing battery life in AIMDs, therefore enhancing patient safety. Full article
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