Search Results (9)

Cortical transcriptional dysregulation is widespread in Huntington’s disease (HD). We re-examined prefrontal Brodmann Area 9 (BA9) RNA-seq (GSE64810; 20 HD, 49 controls) using BH-FDR and GEO2R to obtain differential-expression statistics for downstream in silico integration. A compact, direction-aware 80-gene panel was assembled for visualization/ranking only, while inference relied on validated target sets and full-universe testing. At FDR < 0.05, we detected Up = 2923 and Down = 2448 genes (ratio 1.19), indicating a mild predominance of up-regulation. MIR219A2 was strongly down-regulated, and four experimentally validated targets (FOXC1, NFKBIA, SLC38A2, SLC6A20) overlapped the up-regulated core; as expected for n = 4, no GO/KEGG/Reactome term met FDR < 0.05, and STRING returned no high-confidence edges. Beyond the curated panel, we tested MIR219A2 (hsa-miR-219a-5p; hsa-miR-219a-1-3p; hsa-miR-219a-2-3p) targets against the full FDR-significant BA9 up-regulated universe. Two orthogonal, experimentally supported resources—miRTarBase functional assays and ENCORI/starBase CLIP—showed direction-consistent, FDR-controlled enrichment, with effect sizes and uncertainty reported in the main text, supporting a BA9-specific, MIR219A2-aligned association signal. On the TF axis, MSigDB C3:TFT (gene symbols) revealed significant over-representation of TF target sets among BA9-Up under the same BA9 expressed-gene background after BH-FDR (e.g., NFAT motifs, C/EBP, FOXA/HNF3), while TRRUST v2 applied to the MIR219A2 CLIP–BA9-Up subset provided target-level transparency. MIR219A2 enrichments were robust to composition sensitivity analyses (marker-excluded and neuron/glia-stratified backgrounds). Exploratory GO–Biological Process bubbles are shown for trend summarization only; no term met FDR < 0.05 in the primary analysis. All conclusions are analysis-only; no wet-lab or biofluid/peripheral assays were performed, and findings are BA9-specific—generalization to other regions remains hypothesis-generating. Full article

Mycogone perniciosa is the causative agent of wet bubble disease, which induces significant losses in the production of Agaricus bisporus, indicating the high importance of the development of novel inhibitory agents. The isolation, identification, and molecular characterization of five isolates of M. perniciosa from diseased fruit bodies of A. bisporus was done. Moreover, the study evaluated the in vitro and in situ potential of Origanum vulgare essential oil (EO) to limit M. perniciosa growth and provided chemical characterization of its volatile components. The obtained strains differed phenotypically and according to their molecular characteristics. O. vulgare EO has shown more promising antifungal activity than the commercial fungicide Prochloraz-Mn in the microatmospheric method. In the treatment of experimentally induced wet bubble disease on A. bisporus in the growing chambers with 2% of O. vulgare EO and simultaneous application of spore suspension of mycopathogen, O. vulgare EO totally inhibited the growth of M. perniciosa. Carvacrol, p-cymene, γ-terpinene, and thymol were dominant constituents of O. vulgare EO examined in this study. O. vulgare EO has shown promising potential to limit growth of M. perniciosa and should be further explored as a novel biofungicide. Full article

Commercial production of the button mushroom, Agaricus bisporus (Lange) Imbach, is threatened by various pests and mycopathogenic microorganisms. Sciarid flies (Sciaridae) of the genus Lycoriella are considered as major pests, while major pathogens include the fungi Lecanicillium fungicola (Preuss), Zare and Gams, Hypomyces perniciosus Magnus, Cladobotryum spp., and Trichoderma aggressivum Samuels & W. Gams, the causative agents of dry bubble, wet bubble, cobweb, and green mold diseases, respectively. Control of mushroom pests and diseases has long relied on synthetic chemical pesticides. Pesticide resistance and various health and environmental issues have created a need for sustainable and eco-friendly alternatives to the use of synthetic chemical pesticides for mushroom pest and disease control. The concept of bioprotection, which involves using biological control agents (BCAs) and biopesticide products, offers a viable alternative. The entomopathogenic nematode Steinernema feltiae (Filipjev) and predatory mite Stratiolaelaps scimitus (Womersley) are the most important invertebrate BCAs, while the bacteria Bacillus thuringiensis Berliner, B. amyloliquefaciens, and B. velezensis stand out as the most widely used microbial BCAs/biopesticides. Azadirachtin- and pyrethrum-based products are the most important biochemical biopesticides. Bioprotection agents require inclusion in the integrated pest and disease management (IPDM) programs in order to achieve their full effectiveness. Full article

White button mushrooms yield instability in artificial cultivation, often caused by crop diseases. The main disease is wet bubble disease. The appearance of its causative agent, M. perniciosa, may lead to total yield loss. The microbiocontrol of M. perniciosa is focused on casing soil antagonist use. Since no industrial producer strains of polyfunctional biologics have been used in previous studies, our research goal was to characterize the effect of B. subtilis B-10 and M-22 on a mycopathogen and reveal its control possibilities. The reason for B. subtilis B-10 and M-22 use in mycopathogen control has been revealed by interactions between producer strains and the studying of M. perniciosa. The suppression of M. perniciosa development by producer strains was established, indicating a prolonged B-10 and M-22 effect on the mycopathogen. High biological efficacy in both strains at the early stages of mycopathogen development upon introducing them into the wells and spraying was shown: B-10—50.9–99.6% and M-22—57.5–99.2%, respectively (p ≤ 0.05). Significant differences between producer strains were not revealed, although during the first day of exposure to developed M. perniciosa colonies, M-22 showed greater activity. The high efficiency of preventive treatment when producer strains completely suppressed mycoparasite development permits us to recommend them both for introducing when preparing casing for M. perniciosa control. Full article

Wet bubble disease (WBD) is globally becoming a major problem in mushroom crops. The effectiveness of the application of different chemical (chlorothalonil, metrafenone and prochloraz-Mn) and Bacillus (B. subtilis and B. amyloliquefaciens strains) -based products for the control of WBD in artificially inoculated mushroom crops was studied. Six trials were carried out, with three different inoculum rates. The effect of fungicides on mushroom productivity and disease incidence was assessed. The effectiveness of the treatments is statistically related to the harshness of the disease. The greatest reductions in disease incidence were achieved after treatments with chemical fungicides, notably prochloraz-Mn. When the outbreak was strong, the low calculated incidence reduction values for metrafenone treatments advised against their application. The results also indicated the low effect of both bio-fungicides, at the doses and timing evaluated, for the control of this mushroom disease. Full article

Mycoparasites cause heavy losses in commercial mushroom farms worldwide. The negative impact of fungal diseases such as dry bubble (Lecanicillium fungicola), cobweb (Cladobotryum spp.), wet bubble (Mycogone perniciosa), and green mold (Trichoderma spp.) constrains yield and harvest quality while reducing the cropping surface or damaging basidiomes. Currently, in order to fight fungal diseases, preventive measurements consist of applying intensive cleaning during cropping and by the end of the crop cycle, together with the application of selective active substances with proved fungicidal action. Notwithstanding the foregoing, the redundant application of the same fungicides has been conducted to the occurrence of resistant strains, hence, reviewing reported evidence of resistance occurrence and introducing unconventional treatments is worthy to pave the way towards the design of integrated disease management (IDM) programs. This work reviews aspects concerning chemical control, reduced sensitivity to fungicides, and additional control methods, including genomic resources for data mining, to cope with mycoparasites in the mushroom industry. Full article

Wet bubble disease, caused by Mycogone perniciosa, is a major threat to Agaricus bisporus production in China. In order to understand the variability in genetic, pathogenicity, morphology, and symptom production of the fungus, 18 isolates of the pathogen were collected from diseased A. bisporus in different provinces in China. The isolates were characterized by a combination of morphological, cultural, molecular, and pathogenicity testing on different strains of A. bisporus and amplified fragment length polymorphism (AFLP) analysis. The 18 isolates were identified by Koch’s postulate and confirmed different pathogenic variability among them. The yellow to brown isolates were more virulent than the white isolates. AFLP markers clustered the isolates into two distinct groups based on their colony color, with a high level of polymorphism of Jaccard similarities range from 0.39% to 0.64%. However, there was no evidence of an association between the genetic diversity and the geographical origin of the isolates. Through knowledge of the genetic diversity, phenotypic virulence of M. perniciosa is a key factor for successful breeding of resistant strains of A. bisporus and developing of an integrated disease management strategy to manage wet bubble disease of A. bisporus. Full article

The mycoparasitic fungus Hypomyces perniciosus causes wet bubble disease of mushrooms, particularly Agaricus bisporus. The genome of a highly virulent strain of H. perniciosus HP10 was sequenced and compared to three other fungi from the order Hypocreales that cause disease on A. bisporus. H. perniciosus genome is ~44 Mb, encodes 10,077 genes and enriched with transposable elements up to 25.3%. Phylogenetic analysis revealed that H. perniciosus is closely related to Cladobotryum protrusum and diverged from their common ancestor ~156.7 million years ago. H. perniciosus has few secreted proteins compared to C. protrusum and Trichoderma virens, but significantly expanded protein families of transporters, protein kinases, CAZymes (GH 18), peptidases, cytochrome P450, and SMs that are essential for mycoparasitism and adaptation to harsh environments. This study provides insights into H. perniciosus evolution and pathogenesis and will contribute to the development of effective disease management strategies to control wet bubble disease. Full article

Outbreaks of wet bubble disease (WBD) caused by Mycogone perniciosa are increasing across the world and seriously affecting the yield of Agaricus bisporus. However, highly WBD-resistant strains are rare. Here, we tested 28 A. bisporus strains for WBD resistance by inoculating M. perniciosa spore suspension on casing soil, and assessed genetic diversity of these strains using 17 new simple sequence repeat (SSR) markers developed in this study. We found that 10 wild strains originating from the Tibetan Plateau in China were highly WBD-resistant strains, and 13 cultivated strains from six countries were highly susceptible strains. A total of 88 alleles were detected in these 28 strains, and the observed number of alleles per locus ranged from 2 to 8. Cluster and genetic structure analysis results revealed the wild resources from China have a relatively high level of genetic diversity and occur at low level of gene flow and introgression with cultivated strains. Moreover, the wild strains from China potentially have the consensus ancestral genotypes different from the cultivated strains and evolved independently. Therefore, the highly WBD-resistant wild strains from China and newly developed SSR markers could be used as novel sources for WBD-resistant breeding and quantitative trait locus (QTL) mapping of WBD-resistant gene of A. bisporus. Full article