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Keywords = two-stage cultivation

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17 pages, 4129 KB  
Article
Development and Comparison of Visual Colorimetric Endpoint LAMP and Real-Time LAMP-SYBR Green I Assays for Alternaria alternata (Fr.) Keissl in European Plum
by Hongyue Li, Canpeng Fu, Pan Xie, Wenwen Gao, Zhiqiang Mu, Lingkai Xu, Qiuyan Han and Shuaishuai Sha
J. Fungi 2026, 12(1), 56; https://doi.org/10.3390/jof12010056 - 12 Jan 2026
Abstract
European plum (Prunus domestica L.) is widely cultivated worldwide, with China producing 6.8 million t annually (55% of the global total output). However, the Kashgar region of Xinjiang, China’s primary production area, has experienced outbreaks of brown spot disease caused by Alternaria [...] Read more.
European plum (Prunus domestica L.) is widely cultivated worldwide, with China producing 6.8 million t annually (55% of the global total output). However, the Kashgar region of Xinjiang, China’s primary production area, has experienced outbreaks of brown spot disease caused by Alternaria alternata (Fr.) Keissl. Outbreaks of this disease severely hinder both domestic and global development of the European plum industry. Because this pathogen has a strong latent infection capability during the early stages of disease development, its early detection is important. We develop two detection methods targeting the ITS sequence of A. alternata: LAMP-Cresol Red chromogenic visible endpoint detection and LAMP-SYBR Green I real-time fluorescent detection. Both methods demonstrate high specificity for A. alternata, enabling stable detection of the pathogen in various plant samples; detection limits reach the femtogram (fg) level, significantly surpassing conventional PCR detection capabilities. Development of these highly efficient and precise early detection methods provides a solid foundation for sustainable development of China as a global hub of the European plum industry, and contributes significantly to global disease prevention, control, and industrial stability for this crop. Full article
(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
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19 pages, 4554 KB  
Article
Optimizing Planting Density to Improve Source-Sink Relationship and Yield of Hybrid Wheat Under Late-Sowing Conditions
by Yulu Zhang, Zixin Zhu, Changxing Zhao and Xiaoli Chen
Plants 2026, 15(2), 195; https://doi.org/10.3390/plants15020195 - 8 Jan 2026
Viewed by 153
Abstract
Increasing planting density is an effective measure to mitigate the negative impacts of late-sowing on yield formation in winter wheat. However, the physiological mechanisms underlying source-sink coordination and high-yield performance through density regulation in hybrid wheat with high yield potential remain unclear. A [...] Read more.
Increasing planting density is an effective measure to mitigate the negative impacts of late-sowing on yield formation in winter wheat. However, the physiological mechanisms underlying source-sink coordination and high-yield performance through density regulation in hybrid wheat with high yield potential remain unclear. A two-year field experiment was conducted using the hybrid variety Jingmai 17 and conventional variety Jimai 22 as experimental materials, with three planting densities: 150 plants·m−2 (M1), 300 plants·m−2 (M2), and 450 plants·m−2 (M3). The effects of planting density on the source-sink relationship and yield were systematically investigated. The results showed that both Jingmai 17 (2.4–9.7%) and Jimai 22 (1.4–10.6%) exhibited the most significant yield increases under the M2 treatment. This density maintained photosynthetic capacity during the mid-to-late grain-filling stage, delayed leaf senescence, promoted assimilate translocation to the grains, and simultaneously improved grain number per spike and thousand-grain weight by optimizing source-sink coordination efficiency. Compared with Jimai 22, the hybrid wheat Jingmai 17 demonstrated a significant yield advantage (8.2–10.1%), which was attributed to its stronger and more persistent source function, larger and more stable sink capacity, and higher source-sink coordination efficiency. In conclusion, under late-sowing conditions, the hybrid variety Jingmai 17 at a density of 300 plants·m−2 achieved the most effective optimization of the source-sink relationship, fully exploited its yield potential, and achieved a balance between high and stable yield. This study provides a theoretical and practical cultivation reference for the selection of hybrid wheat varieties in this region. Full article
(This article belongs to the Section Crop Physiology and Crop Production)
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19 pages, 3614 KB  
Article
Physiological State of the Carotenogenic Microalga Coelastrella rubescens (Scenedesmaceae, Sphaeropleales) During Two-Stage Cultivation
by Irina Mansurova, Nataliya Dantsyuk, Irina Chubchikova, Elena Bocharova and Olga Krivenko
Phycology 2026, 6(1), 8; https://doi.org/10.3390/phycology6010008 - 5 Jan 2026
Viewed by 262
Abstract
A strain of aeroterrestrial green microalgae Coelastrella rubescens IBSS-156, isolated from an epilithic lichen, has been previously shown to efficiently produce green biomass and accumulate significant amounts of secondary carotenoids. In this study, using a two-stage batch culture, we analyzed time-course changes in [...] Read more.
A strain of aeroterrestrial green microalgae Coelastrella rubescens IBSS-156, isolated from an epilithic lichen, has been previously shown to efficiently produce green biomass and accumulate significant amounts of secondary carotenoids. In this study, using a two-stage batch culture, we analyzed time-course changes in variable chlorophyll a (Chl a) fluorescence parameters. Additionally, regression models were developed to correlate autofluorescence signals with spectrophotometric measurements of Chl a and total carotenoid content. Maximum quantum efficiency of photosystemII (Fv/Fm) remained high throughout the vegetative stage. At the end of this stage, under nutrient-limited conditions, the relative electron transport rate (rETR) declined to half its peak value during exponential growth. Stress induced a strong response in the algal photosynthetic apparatus during the early red stage. Within the first three days, Fv/Fm and rETR remained extremely low, but both increased sharply by day 5. During secondary carotenoid accumulation, fluorescence parameters remained at 70–80% of the vegetative-stage maximum, followed by a sharp decline toward the end of the red stage. Therefore, changes in variable fluorescence parameters can serve as markers of C. rubescens cellular physiology during biotechnological cultivation, denoting the completion of specific stages. Flow cytometry and pigment assay regression enabled real-time monitoring of C. rubescens biomass and carotenoids. Full article
(This article belongs to the Special Issue Development of Algal Biotechnology)
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19 pages, 1390 KB  
Article
Heterotrophic Soil Microbes at Work: Short-Term Responses to Differentiated Fertilization Inputs
by Florin Aonofriesei, Alina Giorgiana Brotea (Andriescu) and Enuță Simion
Biology 2026, 15(1), 41; https://doi.org/10.3390/biology15010041 - 26 Dec 2025
Viewed by 281
Abstract
The interaction between organic and inorganic nutrients, bacterial communities, and soil fertility has been well documented over time. Conventional agricultural systems heavily utilize both inorganic and organic fertilizers, each exerting distinct effects on soil microbial dynamics and plant growth. The objective of our [...] Read more.
The interaction between organic and inorganic nutrients, bacterial communities, and soil fertility has been well documented over time. Conventional agricultural systems heavily utilize both inorganic and organic fertilizers, each exerting distinct effects on soil microbial dynamics and plant growth. The objective of our experiments was to identify the most effective fertilization strategy for improving the biological quality of a microbiologically impoverished and low-productivity soil. To this end, four fertilization strategies were evaluated: (i) organic fertilizers characterized by a high content of organic carbon (Fertil 4-5-7—variant 1); (ii) organic fertilizers with 12% organic nitrogen from proteins (Bio Ostara N—variant 2) (iii) combined inorganic–organic fertilizers (P35 Bio—variant 3) and (iv) mineral (inorganic) fertilizers (BioAktiv—variant V4). This study aimed to assess the short-term effects of fertilizers with varying chemical compositions on the density of cultivable heterotrophic bacteria and their associated dehydrogenase (DH) activity in a petrocalcic chernozem soil containing pedogenic carbonates. Soil sampling was conducted according to a randomized block design, comprising four replicates per treatment (control plus four fertilizer types). The enumeration of cultivable bacteria was performed using Nutrient Agar and A2R Agar media, whereas dehydrogenase activity (DHA) was quantified based on the reduction of 2,3,5-triphenyl-2H-tetrazolium chloride (TTC) to 1,3,5-triphenyl-tetrazolium formazan (TPF) by bacterial dehydrogenase enzymes. Marked differences were observed in both parameters between the plots amended with inorganic fertilizers and those treated with organic fertilizers, as well as among the organic fertilizer treatments of varying composition. The most pronounced increases in both bacterial density and dehydrogenase activity (DHA) were recorded in the plots receiving the fertilizer with a high organic nitrogen content. In this treatment, the maximum bacterial population density reached 6.25 log10 CFU g−1 dry soil after approximately two months (May), followed by a significant decline starting in July. In contrast, DHA exhibited a more rapid response, reaching its peak in April (42.75 µg TPF g−1 soil), indicating an earlier DHA activation of microbial metabolism. This temporal lag between the two parameters suggests that enzymatic activity responded more swiftly to the nutrient inputs than did microbial biomass proliferation. For the other two organic fertilizer variants, bacterial population dynamics were broadly similar, with peak densities recorded in June, ranging from 5.98 log10 CFU g−1 soil (V3) to 6.03 log10 CFU g−1 soil (V1). A comparable trend was observed in DHA: in V3, maximum DHA was attained in June (30 µg TPF g−1 soil), after which it remained relatively stable, whereas in V1, it peaked in June (24.05 µg TPF g−1 soil) and subsequently declined slightly toward the end of the experimental period. Overall, the temporal dynamics of bacterial density and DHA demonstrated a strong dependence on the quality and biodegradability of the organic matter supplied by each fertilizer. Both parameters were consistently lower under inorganic fertilization compared with organic treatments, suggesting that the observed increases in microbial density and activity were primarily mediated by the enhanced availability of organic substrates. The relationship between the density of culturable heterotrophic bacteria and dehydrogenase (DH) activity was strongly positive (r = 0.79), indicating a close functional linkage between bacterial density and oxidative enzyme activity. This connection suggests that the culturable fraction of the heterotrophic microbial community plays a key role in the early stages of organic matter mineralization derived from the applied fertilizers, particularly in the decomposition of easily degradable substrates. Full article
(This article belongs to the Special Issue The Application of Microorganisms and Plants in Soil Improvement)
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14 pages, 722 KB  
Article
Effect of Different Light Quality and Photoperiod on Mycelium and Fruiting Body Growth of Tricholoma giganteum
by Qingqing Luo, Meirong Zhan, Shengze Yan, Ting Xie, Xianxin Huang, Ruijuan Wang, Huan Lu, Shengyou Wang and Juanjuan Lin
Life 2026, 16(1), 39; https://doi.org/10.3390/life16010039 - 26 Dec 2025
Viewed by 333
Abstract
Light is a crucial environmental regulator for Tricholoma giganteum (T. giganteum). This study investigated the effects of light quality and photoperiod on its growth, physiology, and nutritional composition. During the mycelial stage, blue light (BL) exposure for 5 d promoted the [...] Read more.
Light is a crucial environmental regulator for Tricholoma giganteum (T. giganteum). This study investigated the effects of light quality and photoperiod on its growth, physiology, and nutritional composition. During the mycelial stage, blue light (BL) exposure for 5 d promoted the highest growth rate (0.74 mm d−1, 45% higher than dark control, p < 0.05). Red light (RL) enhanced antioxidant capacity, elevating superoxide dismutase (SOD) activity to 240.20 U·mL−1 (after 5 d) and DPPH radical-scavenging activity to 276.11% (after 3 d). Ultraviolet (UV) suppressed polyphenol oxidase (PPO) activity. BL also increased mycelial polysaccharide content (6.45 g·100 g−1). In the fruiting stage, green light (GL) improved agronomic traits and first-grade yield (3.75 kg), while also promoting the accumulation of glutamate (4.39 g·100 g−1), a key umami compound. Further photoperiod optimization revealed that 4 h of daily GL exposure shortened the fruiting cycle, achieved the highest biological efficiency (98.4%), and maximized both polysaccharide (38.17 g·100 g−1) and glutamate contents (5.70 g·100 g−1). These results recommend a two-stage lighting protocol: BL for mycelial growth and a 4 h daily GL for fruiting, providing a scientific basis for the industrial cultivation of T. giganteum. Full article
(This article belongs to the Section Microbiology)
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24 pages, 4809 KB  
Article
Transcriptomics and Hormone-Targeted Metabolomics Reveal the Mechanisms Underlying Special Branching in Loquat
by Xinyu Li, Chaoyue Feng, Rong Su, Panhui Song, Xuemei Peng, Jiayun Zhou, Yuxing Li and Qunxian Deng
Agronomy 2026, 16(1), 37; https://doi.org/10.3390/agronomy16010037 - 22 Dec 2025
Viewed by 284
Abstract
Branching traits play a critical role in shaping the tree structure of fruit crops and directly influence both yield and fruit quality. Effective and well-managed branching is crucial for maximizing productivity. However, loquat trees typically exhibit weak branching ability, characterized by fewer and [...] Read more.
Branching traits play a critical role in shaping the tree structure of fruit crops and directly influence both yield and fruit quality. Effective and well-managed branching is crucial for maximizing productivity. However, loquat trees typically exhibit weak branching ability, characterized by fewer and longer bearing shoots, along with terminal flower buds, which collectively result in lower yields per unit area. Despite their significance, research on branching characteristics in loquat remains limited. To clarify the factors influencing branching and to provide a rational and effective direction for improving the inherently weak branching performance of current loquat cultivars, we selected the loquat varieties ‘Dawuxing’ and ‘Chunhua 1’, which exhibit significant differences in leaf and branch growth. Compared to ‘Dawuxing’, ‘Chunhua 1’ has longer branches, wider stem and leaf angles, fewer lateral branches, and a looser leaf cell structure. Transcriptome analysis of terminal buds at different developmental stages revealed that differentially expressed genes in the terminal buds of central branches from the spring and summer shoots of the two cultivars were enriched in the plant hormone signal transduction pathway. Hormone-targeted metabolomics identified significant differences in the levels of abscisic acid, auxins, cytokinins, gibberellins, jasmonic acid, and strigolactones in the terminal buds of both cultivars. Through integrated analysis, two candidate genes were identified as potential regulators of branching differences between the two cultivars: EVM0025028 (EjSAPK1), SnRK2 gene a core component of the abscisic acid signaling pathway, and EVM0040331 (EjRMS3), a D14 gene involved in encoding a strigolactone receptor. These findings provide valuable genetic resources for future research on branching regulation in Eriobotrya species and offer a theoretical foundation for enhancing branching management in loquat cultivation. Full article
(This article belongs to the Special Issue Cellular and Molecular Basis of Horticultural Crop Resilience)
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21 pages, 5308 KB  
Article
Spray Deposition on Nursery Apple Plants as Affected by an Air-Assisted Boom Sprayer Mounted on a Portal Tractor
by Ryszard Hołownicki, Grzegorz Doruchowski, Waldemar Świechowski, Artur Godyń, Paweł Konopacki, Andrzej Bartosik and Paweł Białkowski
Agronomy 2026, 16(1), 8; https://doi.org/10.3390/agronomy16010008 - 19 Dec 2025
Viewed by 323
Abstract
Contemporary nurseries of fruit trees and ornamental plants constitute a key component in the production of high-quality planting material. At present, conventional technology dominates in nurseries in Poland and throughout the European Union. It is based on universal agricultural tractors working with numerous [...] Read more.
Contemporary nurseries of fruit trees and ornamental plants constitute a key component in the production of high-quality planting material. At present, conventional technology dominates in nurseries in Poland and throughout the European Union. It is based on universal agricultural tractors working with numerous specialized machines—typically underutilized—including sprayers, inter-row cultivation equipment, fertilizer spreaders, and tree lifters. This concept entails several limitations and high investment costs. Because of the considerable size and turning radius of such machinery, a dense network of service roads (every 15–18 m) and wide headlands must be maintained. These areas, which constitute approximately 20% of the total surface, are effectively wasted yet require continuous agronomic maintenance. An alternative concept employs a set of implements mounted on a high-clearance portal tractor (1.6–1.8 m), forming a specialized unit capable of moving above the rows of nursery crops. The study objective of the research was to evaluate the air distribution generated by an air-jet system installed on a crop-spray boom mounted on a portal sprayer, and to assess spray deposition during treatments in nursery trees. Such a configuration enables the mechanization of a broader range of nursery operations than currently possible, while reducing investment costs compared with conventional technology. One still underutilized technology consists of sprayers with an auxiliary airflow (AA) generated by air sleeves. Mean air velocity was measured in three vertical planes, and they showed lower air velocity between 1.0 m and 5.5 m. Spray deposition on apple nursery trees was assessed using a fluorescent tracer. The experimental design consists of a comparative field experiment with and without air flow support, spraying at two standard working rates (200 and 400 L·ha−1) and determining the application of the liquid to plants in the nursery. The results demonstrated a positive effect of the AA system on deposition. At a travel speed of 6.0 km·h−1 and an application rate of 200 L·ha−1, deposition on the upper leaf surface was 68% higher with the fan engaged. For a 400 L·ha−1 rate, deposition increased by 47%, with both differences statistically significant. The study showed that the nursery sprayer mounted on a high-clearance portal tractor and equipped with an AA system achieved an increase of 58% in spray deposition on the upper leaf surface when the fan was operating at 200 L·ha−1 and 28% at 400 L·ha−1. Substantial differences were found between deposition on the upper and lower leaf surfaces, with the former being 20–30 times greater. Given the complexity of nursery production technology, sprayers that ensure the highest possible biological efficacy and high quality of nursery material will play a pivotal role in its development. At the current stage, AA technology fulfils these requirements. Full article
(This article belongs to the Section Agricultural Biosystem and Biological Engineering)
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25 pages, 1313 KB  
Systematic Review
Advances in Third-Generation Bioethanol Production, Industrial Infrastructure and Efficient Technologies in Sustainable Processes with Algae Biomass: Systematic Review
by Jesus R. Melendez, Daniel A. Lowy, Sufia Hena and Leonardo Gutierrez
Fermentation 2026, 12(1), 2; https://doi.org/10.3390/fermentation12010002 - 19 Dec 2025
Viewed by 624
Abstract
The growing global concern about the environmental impact of fossil fuels’ greenhouse gas emissions has spurred the introduction of innovative, sustainable alternatives. Microalgae biomass holds substantial potential as a viable source material for producing environmentally friendly biofuels. Third-generation (3G) biofuels, specifically algae-derived bioethanol, [...] Read more.
The growing global concern about the environmental impact of fossil fuels’ greenhouse gas emissions has spurred the introduction of innovative, sustainable alternatives. Microalgae biomass holds substantial potential as a viable source material for producing environmentally friendly biofuels. Third-generation (3G) biofuels, specifically algae-derived bioethanol, have emerged as viable alternatives to traditional biofuels. The research provides an exhaustive analysis of the contemporary understanding of manufacturing 3G biofuels from microalgae and macroalgae. Additionally, the study provides an in-depth discussion of the identified gaps within these areas. By conducting a systematic literature review, the authors describe current knowledge of 3G biofuel production. The study addresses two key categories: (i) infrastructure and industrial technology, and (ii) the processes for obtaining third-generation biofuels. One highlights the need for efficient management in all stages of bioethanol production, including cultivation, harvesting, extraction, and conversion. Furthermore, leveraging technological advancements, such as selecting superior genetic strains and developing novel conversion technologies, is essential for improving the efficiency and profitability of the manufacturing process. The successful production of 3G bioethanol from microalgae requires a comprehensive approach that addresses various challenges and incorporates sustainable practices to achieve environmental and economic goals. Full article
(This article belongs to the Special Issue Recent Advancements in Fermentation Technology: Biofuels Production)
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28 pages, 849 KB  
Review
Astaxanthin from Haematococcus pluvialis and Chromochloris zofingiensis: Biosynthetic Pathways, Engineering Strategies, and Industrial Prospects
by Shufang Yang, Xue Lu, Jia Wang, Ye Liu, Man Nie, Jin Liu and Han Sun
Mar. Drugs 2025, 23(12), 485; https://doi.org/10.3390/md23120485 - 18 Dec 2025
Viewed by 928
Abstract
Astaxanthin, a high-value keto-carotenoid with potent antioxidant and health-promoting properties, has gained global attention as a sustainable nutraceutical and biotechnological product. The green microalgae Haematococcus pluvialis and Chromochloris zofingiensis represent two promising natural producers, yet they differ markedly in physiology, productivity, and industrial [...] Read more.
Astaxanthin, a high-value keto-carotenoid with potent antioxidant and health-promoting properties, has gained global attention as a sustainable nutraceutical and biotechnological product. The green microalgae Haematococcus pluvialis and Chromochloris zofingiensis represent two promising natural producers, yet they differ markedly in physiology, productivity, and industrial scalability. This review provides a focused comparative analysis of these two species, emphasizing their quantitative performance differences. H. pluvialis can accumulate astaxanthin up to ~3–5% of dry biomass but typically reaches biomass densities of only 5–10 g L−1, whereas C. zofingiensis achieves ultrahigh biomass concentrations of 100–220 g L−1 under heterotrophic fed-batch fermentation, although its astaxanthin content is much lower (~0.1–0.5% DW). While H. pluvialis remains the benchmark for natural astaxanthin due to its exceptionally high cellular content, its thick cell wall, slow growth, and strict phototrophic requirements impose major cost and operational barriers. In contrast, C. zofingiensis exhibits rapid and flexible growth under heterotrophic, mixotrophic, or phototrophic conditions and can achieve ultrahigh biomass in fermentation, though its ketocarotenoid flux and astaxanthin accumulation remain comparatively limited. Meanwhile, a rapidly growing patent landscape demonstrates global technological competition, with major portfolios emerging in China, the United States, and Europe, spanning chemical synthesis, microbial fermentation, algal metabolic engineering, and high-density cultivation methods. These patents reveal clear innovation trends—ranging from solvent-free green synthesis routes to engineered microalgae and yeast chassis for enhanced astaxanthin production—which increasingly shape industrial development strategies. By synthesizing recent advances in metabolic engineering, two-stage cultivation, and green extraction technologies, this review identifies key knowledge gaps and outlines a practical roadmap for developing next-generation astaxanthin biorefineries, with an emphasis on scalable production and future integration into broader biorefinery frameworks. The findings aim to guide future research and provide actionable insights for scaling sustainable, cost-effective production of natural astaxanthin. Full article
(This article belongs to the Special Issue Fermentation Processes for Obtaining Marine Bioactive Products)
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24 pages, 1961 KB  
Article
Climatic Drivers of Flowering Synchrony in ‘Hass’ Avocado Under Tropical Andean Conditions
by Alexander Rebolledo, Ronal Burbano, Jairo Villamizar and Diego Corrales
Plants 2025, 14(24), 3822; https://doi.org/10.3390/plants14243822 - 16 Dec 2025
Viewed by 334
Abstract
Understanding how climatic variability shapes the reproductive behavior of perennial crops is essential for improving their adaptation to tropical mountain environments. This study examined the influence of altitudinal and thermal gradients on flowering synchrony in ‘Hass’ avocado (Persea americana Mill.) cultivated across [...] Read more.
Understanding how climatic variability shapes the reproductive behavior of perennial crops is essential for improving their adaptation to tropical mountain environments. This study examined the influence of altitudinal and thermal gradients on flowering synchrony in ‘Hass’ avocado (Persea americana Mill.) cultivated across the tropical Andes of Colombia. Climatic variables and phenological stages were monitored across three elevations (2056, 2212, and 2338 m.a.s.l.) during two production cycles. Principal component, confirmatory factor, and circular statistical analyses were applied to integrate multivariate climatic structure with temporal flowering patterns. Results revealed that temperature was the main climatic driver of phenological variability, with significant differences among altitudes. The study revealed an altitudinal thermal–hydric gradient structuring distinct microclimates between 2050 and 2350 m.a.s.l., which determine the synchrony and rate of ‘Hass’ avocado phenological processes. Anthesis was the most environmentally sensitive phase, showing greater stability at intermediate elevations (~2200 m). Multivariate (PCA, CFA, ANOVA) and circular analyses confirmed that accumulated temperature (GDD) effectively predicts phenological progression, defining an optimal altitudinal range for synchrony and productivity in high Andean temperate zones. Full article
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19 pages, 4790 KB  
Article
Phytoplasma Infections and Potential Vector Associations in Wheat and Maize in Poland
by Agnieszka Zwolińska, Marta Jurga-Zotow, Katarzyna Trzmiel, Tomasz Klejdysz and Beata Hasiów-Jaroszewska
Agriculture 2025, 15(24), 2571; https://doi.org/10.3390/agriculture15242571 - 12 Dec 2025
Viewed by 428
Abstract
The production and quality of wheat and maize grain can be significantly affected by various pests and pathogens, with phytoplasmas posing a particular threat due to their rapid spread and potential to cause severe damage to cultivated crops. The objective of this investigation [...] Read more.
The production and quality of wheat and maize grain can be significantly affected by various pests and pathogens, with phytoplasmas posing a particular threat due to their rapid spread and potential to cause severe damage to cultivated crops. The objective of this investigation was to evaluate the risk associated with these wall-less bacteria in wheat and maize crops. To achieve this, a survey was conducted in commercial fields located in southwestern Poland. Samples of winter wheat and fodder maize were collected at two distinct developmental stages, including both symptomatic and asymptomatic plants. Symptoms observed in wheat included yellowing, stunting, and excessive tillering, while maize plants showed yellow leaf striping, red discoloration, and stunted growth. Polymerase chain reaction (PCR) assays using phytoplasma-specific primers, followed by Sanger sequencing and sequence analysis, confirmed phytoplasma infections in 2% of wheat and 1.5% of maize samples. Virtual restriction fragment length polymorphism (RFLP) analysis identified the wheat-infecting phytoplasmas as belonging to subgroup 16SrI-C (‘Candidatus Phytoplasma tritici’-related strain)—a pathogen of major concern for wheat, while maize-infecting phytoplasmas were classified into subgroups 16SrI-B and 16SrV-C. Additionally, wheat plants collected during the early elongation phase were tested for Mastrevirus hordei (former wheat dwarf virus, WDV) using double antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA), which confirmed the presence of WDV in all tested samples. Preliminary screening of field-collected leafhoppers revealed that 7.5% of Psammotettix alienus, the predominant species in wheat fields, carried 16SrI-C phytoplasmas. In maize fields, Zyginidia scutellaris was the most prevalent species, with 1.7% of individuals carrying 16SrV-C phytoplasma. These findings suggest that these insect species may contribute to the transmission of phytoplasmas in wheat and maize. This study provides the first documented evidence of 16SrI-C phytoplasma infecting wheat in Poland, and of 16SrV-C and 16SrI-B phytoplasmas infecting maize, expanding the known host range of these subgroups in the country and highlighting their potential phytosanitary importance. Full article
(This article belongs to the Special Issue Endemic and Emerging Bacterial Diseases in Agricultural Crops)
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41 pages, 8287 KB  
Article
Smart Image-Based Deep Learning System for Automated Quality Grading of Phalaenopsis Seedlings in Outsourced Production
by Hong-Dar Lin, Zheng-Yuan Zhang and Chou-Hsien Lin
Sensors 2025, 25(24), 7502; https://doi.org/10.3390/s25247502 - 10 Dec 2025
Viewed by 445
Abstract
Phalaenopsis orchids are one of Taiwan’s key floral export products, and maintaining consistent quality is crucial for international competitiveness. To improve production efficiency, many orchid farms outsource the early flask seedling stage to contract growers, who raise the plants to the 2.5-inch potted [...] Read more.
Phalaenopsis orchids are one of Taiwan’s key floral export products, and maintaining consistent quality is crucial for international competitiveness. To improve production efficiency, many orchid farms outsource the early flask seedling stage to contract growers, who raise the plants to the 2.5-inch potted seedling stage before returning them for further greenhouse cultivation. Traditionally, the quality of these outsourced seedlings is evaluated manually by inspectors who visually detect defects and assign quality grades based on experience, a process that is time-consuming and subjective. This study introduces a smart image-based deep learning system for automatic quality grading of Phalaenopsis potted seedlings, combining computer vision, deep learning, and machine learning techniques to replace manual inspection. The system uses YOLOv8 and YOLOv10 models for defect and root detection, along with SVM and Random Forest classifiers for defect counting and grading. It employs a dual-view imaging approach, utilizing top-view RGB-D images to capture spatial leaf structures and multi-angle side-view RGB images to assess leaf and root conditions. Two grading strategies are developed: a three-stage hierarchical method that offers interpretable diagnostic results and a direct grading method for fast, end-to-end quality prediction. Performance comparisons and ablation studies show that using RGB-D top-view images and optimal viewing-angle combinations significantly improve grading accuracy. The system achieves F1-scores of 84.44% (three-stage) and 90.44% (direct), demonstrating high reliability and strong potential for automated quality assessment and export inspection in the orchid industry. Full article
(This article belongs to the Special Issue Sensing and Imaging for Defect Detection: 2nd Edition)
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28 pages, 1342 KB  
Article
Biofortification of Durum Wheat Grain: Interactions Between Micronutrients as Affected by Potential Biofortification Enhancers and Surfactants
by Despina Dimitriadi, Georgios P. Stylianidis, Ioannis Tsirogiannis, Styliani Ν. Chorianopoulou and Dimitris L. Bouranis
Plants 2025, 14(24), 3759; https://doi.org/10.3390/plants14243759 - 10 Dec 2025
Viewed by 365
Abstract
Wheat possesses inherently low concentrations and bioavailability of the essential micronutrients (EMis) zinc (Zn), iron (Fe), manganese (Mn), and copper (Cu), limiting its capacity to sufficiently address human nutritional requirements. Biofortification of wheat with EMis through agricultural methods is a strategy aimed at [...] Read more.
Wheat possesses inherently low concentrations and bioavailability of the essential micronutrients (EMis) zinc (Zn), iron (Fe), manganese (Mn), and copper (Cu), limiting its capacity to sufficiently address human nutritional requirements. Biofortification of wheat with EMis through agricultural methods is a strategy aimed at addressing EMi deficiencies in human populations that emphasize cost-effectiveness and sustainability. All EMis are usually applied foliarly as sulfates, which indicates sulfur (S)-assisted biofortification. The formation of EMi complexes provides solubility as well as protection during long-distance transport. Several small molecules are possible candidates as ligands—the S-containing amino acids cysteine and methionine among them—linking EMi homeostasis to S homeostasis, which represents another aspect of S-assisted biofortification. In this study, we delve into the S-assisted agronomic biofortification strategy by applying sulfate micronutrients coupled with a sulfur-containing amino acid and we explore the effect of the selected accompanying cation (Zn, Fe, Mn, or Cu) on the EMi metallome of the grain, along with the biofortification effectiveness, whilst the type of the incorporated surface active agent seems to affect this approach. A field experiment was conducted for two years with durum wheat cultivation subjected to various interventions at the initiation of the dough stage, aiming to biofortify the grain with EMis provided as sulfate salts coupled with cysteine or methionine as potential biofortification enhancers. The mixtures were applied alone or in combination with commercial surfactants of the organosilicon ethoxylate (SiE) type or the alcohol ethoxylate (AE) type. The performance of two relevant preparations, FytoAmino-Bo (FABo) and Phillon, has been studied, too. The interventions affected the accumulation of the EMi metallome into the grains, along with the interactions of the EMis within this metallome. Several interventions increased the EMi metallome of the grain and affected the contribution of each EMi to this metallome. Many interventions have increased Zn and Fe, while they have decreased Mn and Cu. An increase in Zn corresponded (i) to a decrease in Cu, (ii) to an increase or no increase in Fe, and (iii) to a variable change in Mn. Cys increased the metallome by 34% and Zn and Fe within it. ZnSO4 and FeSO4 increased the metallome by 5% and 9%, whilst MnSO4 and CuSO4 increased the metallome by 36% and 33%, respectively. The additives improved the contribution to increasing the metallome in most cases. Without surfactant, the efficacy ranking proved to be MnSO4 > CuSO4 > ZnSO4 > FeSO4. The use of SW7 sustained the order CuSO4 > MnSO4 > ZnSO4 > FeSO4. The use of Saldo switched the order to CuSO4 > ZnSO4 > FeSO4 > MnSO4. In the case of Phillon, the order was CuSO4 > FeSO4 > ZnSO4 > MnSO4. The effect of Cys or Met was case-specific. The differentiations in the intensity of both the agronomic performance (grain weight, grain weight per spike, and yield) and the biofortification performance (concentrations vs. accumulations of each EMi within the grain) among the various combinations of EMis and additives are depicted by adopting a grading scale, which highlighted the intensity of the acclimation reaction of the biofortified grain to the applied intervention. Full article
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15 pages, 1518 KB  
Article
Effects of Serendipita Fungi and Substrate Composition on Symbiotic Germination and Seedling Development of Dendrobium officinale
by Nengqi Li, Kaifeng Tao, Jian Yue, Juan Su, Jiangyun Gao and Haiquan Huang
Horticulturae 2025, 11(12), 1489; https://doi.org/10.3390/horticulturae11121489 - 9 Dec 2025
Viewed by 399
Abstract
The use of mycorrhizal fungi to enhance orchid seed germination and seedling growth is a promising approach for orchid propagation and conservation, but practical applications remain limited. In this study, we developed a direct seeding technique based on mycorrhizal symbiosis using Dendrobium officinale [...] Read more.
The use of mycorrhizal fungi to enhance orchid seed germination and seedling growth is a promising approach for orchid propagation and conservation, but practical applications remain limited. In this study, we developed a direct seeding technique based on mycorrhizal symbiosis using Dendrobium officinale. Seeds were inoculated with two fungal strains, Serendipita officinale (SO) and Serendipita indica (SI), individually or in combination, and cultivated on three substrates to identify optimal fungus–substrate combinations. SO achieved the highest germination rate (52.9 ± 5.6%) at 30 days on substrate 1 but declined at later stages, while SI performed best on substrate 3 at 30 days (72.3 ± 6.7%) but was less effective after 90 days. The SO and SI mixture showed strong synergistic effects on substrate 1, with peak germination (48.7 ± 5.9%) and seedling formation (45.6 ± 5.1%) at 120 days. Substrates 1 and 3 significantly outperformed 2 (p < 0.05), with 1 promoting rapid early germination and 3 favoring long-term seedling establishment. In contrast, controls without fungi showed less than 5% for all indices, confirming the necessity of symbiotic fungi. Microscopic observations revealed typical orchid mycorrhizal structures and dynamic hyphal turnover, providing histological evidence of the symbiotic mechanism. These findings establish a practical framework for mycorrhizal-assisted propagation and contribute to the ecological cultivation and conservation of D. officinale. Full article
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18 pages, 3908 KB  
Article
Regrowth and Yield Formation of ‘Qingtian No. 1’ Oat in Response to Cutting Management
by Yangji Jia, Yuanyuan Zhao, Chengti Xu, Xiaojian Pu, Haiying Zhang, Fengjuan Xue and Hao Sun
Agriculture 2025, 15(24), 2542; https://doi.org/10.3390/agriculture15242542 - 8 Dec 2025
Viewed by 351
Abstract
The optimization of mowing management is crucial for establishing a high-yielding “one sowing, two harvests” system for oat (Avena sativa L.) forage production in the alpine regions of the Tibetan Plateau. This study aimed to identify the optimal combination of cutting stage [...] Read more.
The optimization of mowing management is crucial for establishing a high-yielding “one sowing, two harvests” system for oat (Avena sativa L.) forage production in the alpine regions of the Tibetan Plateau. This study aimed to identify the optimal combination of cutting stage and stubble height to maximize the total seasonal productivity of the system. A two-factor field experiment, arranged in a randomized complete block design, was conducted over two consecutive growing seasons (2024 and 2025) using the local cultivar ‘Qingtian No. 1’. The treatments consisted of two cutting stages (flowering stage, C1; milk stage, C2) and three stubble heights (5 cm, H1; 10 cm, H2; 15 cm, H3). Regarding regrowth phase performance, mowing at the flowering stage (C1) resulted in significantly superior agronomic traits (e.g., stem diameter, tiller number) and photosynthetic characteristics compared to the milk stage (C2). In terms of forage quality, the C2H2 treatment maximized water-soluble carbohydrate content but also led to elevated fiber levels. However, the key metric for system evaluation—the total seasonal dry matter yield—was predominantly governed by the cutting stage. Mowing at the milk stage (C2) consistently resulted in a higher total yield than C1, with optimal combinations yielding 1.31 t/ha (C2H1) in 2024 and 1.25 t/ha (C2H2) in 2025. This advantage was primarily due to a substantially greater first-harvest yield under C2, which outweighed the regrowth benefits of C1. A comprehensive evaluation based on total system productivity and forage quality indicates that mowing at the milk stage (C2) is the optimal strategy for achieving high total output. For ‘Qingtian No. 1’ oat in this region, a stubble height of 10 cm (as in the C2H2 treatment) is recommended to ensure robustness across years. This management strategy secures a high total seasonal forage yield through effective biomass allocation between harvests, extending the supply window and offering a sustainable cultivation model for this ecologically vulnerable region. Full article
(This article belongs to the Section Crop Production)
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