Search Results (94)

Understanding population genetic connectivity is crucial for the sustainability and persistence of marine biodiversity. As a fundamental reef-building macroalga of the coastal ecosystem, Halimeda macroloba Decaisne is one of the dominant intertidal seaweeds in the Indo-Pacific region. However, its genetic structure and population connectivity have been poorly recognized. Here, we explored the population genetic structure and genetic connectivity of H. macroloba using chloroplast tufA, rps3-rpl14, and rbcL. Our results indicated low genetic diversity and shallow population genetic structure at the intraspecific level, uncovering five genetic groups with six subdivided lineages in tufA and two genetic clusters in rps3-rpl14. We detected demographic expansion in the last glacial period of the Pleistocene and significantly asymmetric gene flow among different geographical units. We suggest that the southwestward ocean currents under the influence of northeast monsoon in the Indo-Pacific region are the main factor in shaping the present genetic structure, and the asexual reproduction of H. macroloba also plays an important role of the low genetic diversity pattern; in addition, the divergence between genetic clusters might be related to the historical isolation led by the paleoclimate oscillation in the Pleistocene. The Xisha Islands in the northern South China Sea might serve as a potential refugium of H. macroloba, which needs extra attention to conservation management. Given the limitation of sample size, we need to conduct more field work and carry out further research at a larger scale in the future. Our study provided new insights into the theory of population connectivity in the Indo-Pacific region and provided scientific basis for tropical costal seaweed conservation. Full article

The process of tufa deposition created the Plitvice Lakes, a unique freshwater cascade system of 16 lakes separated by tufa barriers. This complex karst hydrosystem reacts very sensitively to even small changes, and eutrophication can directly and indirectly affect tufa formation. With the purpose of determining the influence of nitrogen (N) and phosphorus (P) on periphyton’s chlorophyll a concentration, tufa deposition, and macrozoobenthos, we used nutrient-diffusing substrates. The in situ experiment combined the effects of seasons, stronger/weaker tufa deposition, and the presence/absence of macrophytes. The season was the dominant factor influencing hydrology, physicochemical factors, tufa deposition, and the effects of eutrophication. Phosphorus was the limiting factor for periphyton developing on artificial substrates, as evidenced by the highest chlorophyll a level on P and N+P substrates. Lower tufa deposition supported a higher chlorophyll a level, while macrophytes reduced the chlorophyll a concentration and tufa deposition, possibly through effects on the flow and via root respiration. The effects of nutrients on tufa deposition were not recorded. P and N+P treatment increased macrozoobenthos abundance only in some seasons. Trophic groups of macrozoobenthos responded to the addition of P and N+P in the form of higher proportions of gazers and detritivores; however, the response of macrozoobenthos was generally weaker than that of autotrophs. Full article

The Mesoproterozoic alkaline Grønnedal-Íka complex (1325 ± 6 Ma) is intruded into old Archean gneissic bedrock between Ikka Fjord and Kangilinnguit (Grønnedal) by Arsuk Fjord in Southwestern Greenland. This 8 × 2.8 km oval-shaped complex constitutes the oldest part of the Gardar Province, representing a failed continental rift across southern Greenland. It comprises outer rings of mainly nepheline syenites with a central plug of Fe- and Ca-rich carbonatites. Here, we present petrological data on the syenites and carbonatites combined with geochemical modelling of groundwater percolating through the Grønnedal-Íka complex and the secondary minerals and fluid chemistry arising from these fluid–rock reactions. The results show that modelling using input data of (1) meteoric water in a closed system with respect to atmospheric CO₂ can (2) dissolve the primary minerals of the syenites and carbonatites and (3) simulate the fluid chemistry of the natural sodium carbonate springs of 3–4 °C and pH 10–11 seeping up through fractures at the bottom of Ikka Fjord, which (4) leads to the deposition of nearly a thousand tufa columns of the cold carbonate mineral ikaite (CaCO₃•6H₂O). Our results thereby support the geochemical relationship between fluid–rock reactions inside the Grønnedal-Íka alkaline complex and the precipitation of ikaite in the shape of submarine tufa columns in Ikka Fjord. The modelling indicates that the groundwater itself can be supersaturated with respect to ikaite and provide the seed crystals that lead to the columnar growth of ikaite up to 20 m tall in the seawater of Ikka Fjord. Full article

We conducted a systematic review of infectious disease (ID) prevalence studies in the Samoan Islands from 2000 to 2024 and aimed to synthesise the prevalence of IDs, the purpose of the studies, and the potential utility of survey results for informing public health decision-making. We searched five academic databases, the Western Pacific Region Index Medicus, and grey literature up until April 2024. English language publications of ID surveys in American Samoa and Samoa were included. Each study’s aim, design, and prevalence results were extracted and categorised by disease and data sources. We identified 46 publications reporting the prevalence of 15 different IDs; 42 publications (91%) reported data from 31 original surveys, of which three (9%) investigated the prevalence of multiple IDs. Twenty-eight (62%) publications primarily aimed to report prevalence to inform public health interventions. Samples from one survey, initially conducted for leptospirosis, were subsequently tested to confirm transmission, describe prevalence, and investigate risk factors for seven other diseases. We emphasise the valuable contribution of prevalence studies in supporting evidence-based public health interventions. The extensive prevalence studies in the Samoan Islands illustrate the need for adopting integrated multipathogen approaches to surveillance to reduce costs, document burden, and generate actionable insights to support evidence-based decisions to prevent, control, and eliminate infectious diseases. Full article

The taxonomic position of the green alga Capsosiphon fulvescens was first reported from Northern Europe and has since been reported from all over the world, including Korea. In Korea, C. fulvescens has been used as an essential edible economic alga for approximately 570 years, from the time of the Joseon Dynasty to the present, and is currently under development as a new aquaculture strain. Therefore, examining the taxonomic relationships between the European and Korean C. fulvescens is important. In this study, we analyzed nuclear 18S rDNA and ITS regions and compared them with the DNA sequences of authentic materials of North Atlantic C. fulvescens. Additionally, rbcL and tufA genes were sequenced to analyze genetic variations among populations. The results showed that the Korean and European C. fulvescens were different species. Moreover, the Korean C. fulvescens was distantly related to the North Atlantic C. fulvescens at the order level. Moreover, the Korean C. fulvescens formed a sister group with the North Pacific Pseudothrix borealis. Cryptic genetic diversity was observed at the intraspecific level among the Korean populations. These findings will help in tracing the origin of the Korean C. fulvescens and provide new genetic insights into this species. Full article

Seaweed presents a sustainable alternative source of valuable fatty acids (FAs) involving omega-3 (n-3) and omega-6 (n-6). As such, there is great potential to reduce pressure on wild fish populations, helping to combat overfishing and its associated global impacts. This study explored the effect of various environmental factors on the FA content and profile of Ulva lactuca using indoor photobioreactors. The taxonomic identity of U. lactuca was confirmed through DNA sequencing using 3 markers (rbcL, ITS, and tufa). The effects of temperature (8, 20, and 30 °C), seawater salinity (3.5, 3.0, 2.5, and 2.0% w/v), nutrient type and concentration (0 or 6.4 ppm, consisting of 50% w/w N-NO₃, 50% w/w N-NH₄, and 0–1 ppm P-PO₄), and irradiance (50, 100, and 150 μmol photons m⁻² s⁻¹) were evaluated. This study assessed their influence on U. lactuca’s biomass production rate (BPR), dry weight (DW), ash content (AC), and FA composition after 7 and 21 days. The results revealed that after 21 days, the polyunsaturated FA (PUFA) content decreased with the increasing seawater salinity (i.e., 38.9% ± 0.7, 33.8% ± 0.4, and 27.0% ± 0.4, and 6.6% ± 0.1 for a salinity of 2.0, 2.5, 3.0, and 3.5% w/v, respectively). The content of n-3 after 21 days increased significantly under the following conditions: 8 °C, a salinity of 2.5% w/v, 6.4 ppm of nitrogen without the addition of phosphorous, and an irradiation of 50 and 150 μmol photons m⁻² s⁻¹, affording a low n-6/n-3 proportion that fits a desirable level of an n6/n3 ratio (1–10) for a balanced nutritional diet. Full article

The sustainable management of groundwater in the Jimma area is complicated by a lack of comprehensive studies on its chemical makeup and the geochemical processes influencing its hydrochemistry. This research aims to fill that gap by examining 51 groundwater samples from various sources, including deep groundwaters, shallow groundwaters, hand-dug well groundwaters, surface waters, and springs within the area primarily consisting of complex volcanic rocks. The goal is to describe the hydrogeochemical characteristics and determine the key processes affecting groundwater composition in this volcanic area. The study identifies clear patterns in cation and anion concentrations. For deep groundwaters, the average cation concentration is ranked as Na⁺ > Ca²⁺ > Mg²⁺ > K⁺, while shallow groundwaters, hand-dug well groundwaters, surface waters, and springs show a ranking of Ca²⁺ > Na⁺ > Mg²⁺ > K⁺. The major anions are typically ordered as HCO₃⁻ > NO₃⁻ > Cl⁻ > SO₄²⁻. The quantitative hydrogeochemical analysis indicates that the freshwater types in the region are primarily Ca-HCO₃ and Ca-Mg-HCO₃, with some highly mineralized Na-HCO₃ waters also detected. The weathering of silicate minerals mainly drives the geochemical processes affecting groundwater chemistry. An increase in mineralization, suggested by saturation indices, points to a longer residence time underground, with deep groundwaters exhibiting the highest saturation levels and springs the lowest. This mineralization is especially significant for Mg-silicates and carbonates. Stability diagrams for feldspar minerals further demonstrate groundwater evolution along flow paths, revealing that shallow systems are in equilibrium with minerals like gibbsite, whereas deeper systems achieve stability with albite, Ca-montmorillonite, and microcline. Higher CO₂ levels (10^−1.5 to 10^0.5 atm), likely from mantle-magma degassing, add more HCO₃⁻ to the deeper aquifers. This study offers the first thorough characterization of the groundwater composition in the Jimma area and provides important insights into the Jimma area’s hydrogeochemical development, establishing a basis for enhanced groundwater management within this intricate volcanic aquifer system. Full article

The Mataranka Springs Complex is a regional groundwater discharge for the Cambrian Limestone Aquifer (CLA) of the Northern Territory (Australia) and forms the headwaters for the environmentally sensitive Roper River. Whilst a regional groundwater contribution to the spring flow is well established, the absence of cover over the CLA in the vicinity of the springs and the prevalence of karst suggest that a component of quick flow during the wet season is possible. A quick flow contribution to the springs was evaluated using a biweekly monitoring programme for several environmental tracers (major ions, stable isotopes of water, and ²²²Rn) at two large springs (Rainbow Spring and Bitter Spring) and at one minor spring (Fig Tree Spring) over a two-year period that included a relatively dry (2019–2020) and a relatively wet (2020–2021) rainy season. There were limited variations in all tracers at Rainbow and Bitter springs throughout the monitoring programme, indicating an absence or a minimal contribution from quick flow. In contrast, all tracers responded to large rainfall events at a scale of days to weeks in Fig Tree Spring, consistent with a component of quick flow. However, the tracer response at Fig Tree was complex and possibly involved a combination of quick flow, unsaturated zone processes, and changes in the geochemical environment in the aquifer. Quick flow may be favoured in the parts of the Mataranka Springs Complex, where flow paths flow through the karstic tufa layer overlying the CLA. Full article

The genus Borodinellopsis is extremely rare and is the subject of limited research and reports. It currently comprises only two species, Borodinellopsis texensis and Borodinellopsis oleifera, which differ from other globose algae due to their unique centrally radiating chloroplasts. In this study, we describe a new specimen in detail based on morphological data and phylogenetic analysis and identify it as B. insignis. B. insignis and B. texensis exhibit a high degree of similarity, likely due to their shared characteristics of centrally radiating chloroplasts and flagella that are significantly longer than the cell body. A phylogenetic tree constructed based on the 18S rDNA sequence indicates that B. insignis and B. texensis form a branch that is distinct from other genera, such as Tetracystis, Spongiococcum, and Chlorococcum. Phylogenetic analysis of the ITS sequence, the rbcL gene, and the tufA gene reveals that B. insignis is significantly different from B. texensis, in that it has oil droplets, smaller vegetative cells and zoospores, and distinct habitats. It is also different from B.oleifera as it has smaller vegetative cells and zoospores, turns red after cultivation, has longer flagella, and resides in different habitats. The chloroplast genomes of B. texensis and B. insignis further show significant differences, with the phylogenetic tree constructed based on the analysis of 49 protein-coding genes forming two separate branches. The collinearity of the chloroplast genomes in B. texensis and B. insignis is poor, with 15 out of the 31 homologous modules displaying inversions and complex rearrangements. Given these differences, we classify this alga as a new species and named it Borodinellopsis insignis sp. nov. Full article

Analyzing agricultural and hydrological drought at different timescales is essential for designing adaptation strategies. This study aimed to assess agricultural and hydrological drought in the Abbay Basin of Ethiopia by using multiple indices, namely the standardized precipitation index (SPI), standardized precipitation evapotranspiration index (SPEI), normalized difference vegetation index (NDVI), vegetation condition index (VCI), and drought severity index (DSI). Climate extremes were assessed over the Abbay Basin between 1981 and 2022. The results indicate that the years 1982 and 2014 were the most drought-prone, while the year 1988 was the wettest year in the Abbay Basin. The results revealed the presence of extremely dry and severely dry conditions, potentially impacting agricultural output in the region. Agricultural drought was identified during the main crop seasons (June to September). The VCI results indicated the presence of extremely wet and severely wet conditions. In 2012, 65% of the area was affected by extreme drought conditions, while nearly half of the Basin experienced extreme drought in 2013 and 2022. The DSI results indicated the occurrence of agricultural drought, although the spatial coverage of extreme dry conditions was lower than that of the other indices. In 2003, 78.49% of the Basin experienced moderate drought conditions, whereas severe drought affected 20% of the region. In 2010, about 90% of the Basin experienced moderate drought. This study provides valuable insights for agricultural communities, enabling them to mitigate the impact of drought on crop yields by utilizing different adaptation strategies. An adequate knowledge of agricultural and hydrological drought is essential for policymakers to assess the potential effects of drought on socioeconomic activities and to recognize the significance of implementing climate change adaptation measures. Full article

Asterarcys quadricellularis strain AQYS21, a green microalga isolated from the brackish waters near Manseong-ri Black Sand Beach in Korea, shows considerable potential as a source of bioactive compounds and biofuels. Therefore, this study analyzed the morphological, molecular, and biochemical characteristics of this strain; optimized its cultivation conditions; and evaluated its suitability for biodiesel production. Morphological analysis revealed characteristics typical of the Asterarcys genus: spherical to ellipsoidal cells with pyrenoid starch plates and mucilage-embedded coenobia. Additionally, features not previously reported in other A. quadricellularis strains were observed. These included young cells with meridional ribs and an asymmetric spindle-shaped form with one or two pointed ends. Molecular analysis using small-subunit rDNA and tufA sequences confirmed the identification of the strain AQYS21. This strain showed robust growth across a wide temperature range, with optimal conditions at 24 °C and 88 µmol m⁻²s⁻¹ photon flux density. It was particularly rich in ω-3 α-linolenic acid and palmitic acid. Furthermore, its biodiesel properties indicated its suitability for biodiesel formulations. The biomass of this microalga may serve as a viable feedstock for biodiesel production and a valuable source of ω-3 fatty acids. These findings reveal new morphological characteristics of A. quadricellularis, enhancing our understanding of the species. Full article

Functional diversity is a key component of biodiversity that reflects various dimensions of ecosystem functioning and the roles organisms play within communities and ecosystems. It is widely used to understand how ecological processes influence biotic assemblages. With an aim to increase our knowledge about dragonfly ecological requirements in tufa-depositing karst habitats, we assessed functional diversity of their assemblages, various life history traits (e.g., stream zonation preference, substrate preference, reproduction type), and relationship between functional diversity and physico-chemical water properties in three types of karst lotic habitats (springs, streams, and tufa barriers) in a biodiversity hotspot in the western Balkan Peninsula. Dragonfly functional diversity was mainly characterized by traits typical for lotic rheophile species with medium dispersal capacity. Among the investigated habitats, tufa barriers, characterized by higher (micro)habitat heterogeneity, higher water velocity, as well as lower conductivity and concentration of nitrates, can be considered as dragonfly functional diversity hotspots. Functional diversity and most of the life history traits were comparable among different substrate types in the studied habitats, indicating higher importance of habitat type in shaping dragonfly functional diversity patterns in karst lotic habitats. Our results should be considered in the management and conservation activities of vulnerable karst freshwater ecosystems and their dragonfly assemblages. Full article

The acquisition of the three-dimensional (3D) morphology of the complete tufa dam system is of great significance for analyzing the formation and development of a pellucid tufa lake in a fluvial tufa valley. The dam system is usually composed of the dams partially exposed above-water and the ones totally submerged underwater. This situation makes it difficult to directly obtain the real 3D scene of the dam system solely using an existing measurement technique. In recent years, unmanned aerial vehicle (UAV) digital photogrammetry has been increasingly used to acquire high-precision 3D models of various earth surface scenes. In this study, taking Wolong Lake and its neighborhood in Jiuzhaigou Valley, China as the study site, we employed a fixed-wing UAV equipped with a consumer-level digital camera to capture the overlapping images, and produced the initial Digital Surface Model (DSM) of the dam system. The refraction correction was applied to retrieving the underwater Digital Elevation Model (DEM) of the submerged dam or dam part, and the ground interpolation was adopted to eliminate vegetation obstruction to obtain the DEM of the dam parts above-water. Based on the complete 3D model of the dam system, the elevation profiles along the centerlines of Wolong Lake were derived, and the dimension data of those tufa dams on the section lines were accurately measured. In combination of local hydrodynamics, the implication of the morphological characteristics for analyzing the formation and development of the tufa dam system was also explored. Full article

The Arabian Desert is characterised by very low rainfall and high evaporation, yet over 210 springs are on its northeastern edge in central Iraq along the Abu Jir lineament, which represents the western depositional margin of a foreland basin infilled by the floodplain sediments of the Tigris and Euphrates Rivers; there is little evidence of faulting. The springs discharge from gently east-dipping Paleocene–Eocene limestones, either where groundwater flowpaths intersect the ground surface or where groundwater flow is forced to the surface by confining aquitards. Calculated annual recharge to the aquifer system across the Arabian Desert plateau (130–500 million m³) is significant, largely due to rapid infiltration through karst dolines, such that karst porosity is the primary enabler of groundwater recharge. The recharge is enough to maintain flow at the Abu Jir springs, but active management of groundwater extraction for agriculture is required for their long-term sustainability. The hydrochemistry of the springs is determined by evaporation, rainfall composition (high SO₄ concentrations are due to the dissolution of wind-blown gypsum in rainfall), and plant uptake of Ca and K (despite the sparse vegetation). Limestone dissolution has relatively little impact; many of the springs are undersaturated with respect to calcite and lack tufa/travertine deposits. The springs at Hit-Kubaysa contain tar and high levels of H₂S that probably seeped upwards along subvertical faults from underlying oil reservoirs; this is the only location along the Abu Jir lineament where deep-seated faults penetrate to the surface. The presence of hydrocarbons reduces the Hit-Kubaysa spring water and converts the dissolved SO₄ to H₂S. Full article

Tufa deposits in karst rivers are unique habitats created by mutual interactions between specific environmental and biotope features and inhabited by diatoms as a highly abundant and diverse algal group. This pilot study aimed to investigate the diversity of diatom communities on tufa depositing habitats and assess the Una River’s ecological status using a comparative molecular and morphological approach for diatom identification. The 312 base pairs of the rbcL gene were barcoded and analyzed using MiSeq reads and amplicon sequence variants (ASVs) obtained by the DADA2 pipeline. The reference database Diat.barcode v7 was used for taxonomic assignment. The morphological identification of the diatoms was carried out in parallel. In total, the combined dataset revealed 46 taxa identified at genus rank, 125 on the subgenus, and 145 on combined taxonomy rank. The metabarcoding approach mostly leads to a lower number of identified taxa at species rank (58 in molecular vs. 119 in optical inventory), resulting in higher values of beta diversity and heterogeneity in diatom assemblages in samples obtained by morphological approach. Despite the high percentage of taxonomically not assigned diatom ASVs to the species rank, high Shannon diversity index values and a similar number of taxa per locations compared to the morphological approach were obtained. Taxa Achnanthidium minutissimum (Kützing) Czarnecki, Achnanthidium pyrenaicum (Hustedt) H.Kobayasi, Amphora pediculus (Kützing) Grunow, Diatoma vulgaris Bory, Navicula cryptotenella Lange-Bertalot, and Navicula tripunctata (O.F.Müller) Bory were identified at all locations in both inventories. Although limited consistency in the diatom abundances between the two inventory datasets was found, a similar grouping of samples was observed connected to the river’s longitudinal gradient. The data obtained using molecular approach in most sites indicated a mostly lower ecological status (good or moderate) compared to the data obtained from the morphological approach (high, good, and moderate). The potential of environmental DNA (eDNA) diatom metabarcoding for water monitoring and diversity studies is undeniable, but to fully realize the benefits of these methods in the future, it is essential to standardize protocols and expand the reference database for species found in specific habitats, such as tufa deposits. Full article