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Keywords = time-resolved IR spectroscopy

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13 pages, 807 KiB  
Article
High-Resolution Fourier Transform Spectra of Atomic Sulfur: Testing of Modified Quantum Defect Theory
by Vladislav E. Chernov, Nikolai L. Manakov, Alexei V. Meremianin, Alexander V. Naskidashvili, Svatopluk Civiš, Martin Ferus, Petr Kubelík, Ekaterina M. Zanozina and Oxana V. Zetkina
Atoms 2025, 13(2), 16; https://doi.org/10.3390/atoms13020016 - 8 Feb 2025
Viewed by 721
Abstract
QDT (quantum defect theory) is an effective technique for calculating processes involving highly excited (Rydberg) states of atoms, ions, and molecules with one valence electron outside filled shells, whose spectrum generally resembles a hydrogen-like atom’s spectrum. At the expense of some modification of [...] Read more.
QDT (quantum defect theory) is an effective technique for calculating processes involving highly excited (Rydberg) states of atoms, ions, and molecules with one valence electron outside filled shells, whose spectrum generally resembles a hydrogen-like atom’s spectrum. At the expense of some modification of QDT, in this paper, we extend its applicability to describe low- and intermediate-excited levels of atoms with more complex spectra (on the example of atomic sulfur S I). Transitions between just such states are responsible for the infrared (IR) spectra of atoms. While the quantum defects (QDs) of the highly excited Rydberg levels are determined by the energies of individual levels near the ionization threshold, the radial wave functions of low excited electronic states, in the framework of our modification of QDT, include the QD dependence on energy over a wide energy range; this dependence is determined from the whole spectral series. We show that, outside the atomic core domain, the electron radial functions calculated using modified semi-phenomenological QDT agree well with ab initio calculations. As another assessment of QDT accuracy, we show satisfactory agreement of the probabilities of dipole transitions in S I, taken from the NIST Atomic Spectra Database, with our QDT calculations. We perform an indirect experimental verification of QDT on the basis of spectra of S I in gas-discharge plasma measured by time-resolved high-resolution Fourier transfer spectroscopy (FTS). The Boltzmann plot built from our measured spectra demonstrates that QDT provides a satisfactory approximation for calculating the experimental lines’ intensities. Full article
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15 pages, 3175 KiB  
Article
Covalent Grafting of Eosin Y to the Giant Keplerate {Mo132} through an Organosilicon Linker in Homogeneous Regime
by Andrey Denikaev, Grigory Kim, Evgeny Greshnyakov, Nikolai Moskalenko and Kirill Grzhegorzhevskii
Inorganics 2023, 11(6), 239; https://doi.org/10.3390/inorganics11060239 - 30 May 2023
Cited by 3 | Viewed by 1940
Abstract
The template effect of giant polyoxometalates (POM) shows promising results towards the supramolecular design of hybrid materials suitable for photocatalytic reactions. Here, we demonstrate a novel synthetic approach for covalently grafting the xanthene dye eosin Y (EY) to the nanoscale Keplerate POM {Mo [...] Read more.
The template effect of giant polyoxometalates (POM) shows promising results towards the supramolecular design of hybrid materials suitable for photocatalytic reactions. Here, we demonstrate a novel synthetic approach for covalently grafting the xanthene dye eosin Y (EY) to the nanoscale Keplerate POM {Mo132} via an organosilicon linker (3-aminopropyltrimethoxysilane, APTMS) in a homogeneous regime. Using a phase transfer agent, tetrabutylammonium bromide, we solubilize the Keplerate POM modified with six {Si(CH2)3NH2} groups, {Mo132}@Si6, in a series of organic solvents—acetonitrile, acetone, tetrahydrofuran, and dichloromethane—to perform post-functionalization by using an NHS-ester of EY. Both IR and Raman spectroscopy affirm the preservation of the POM’s structure and showcase an amide bond formation between POM and EY in the obtained conjugate {Mo132}@Si6@EY@TBA. Grafting’s success is observed through significant downfield shifting of EY’s aromatic protons’ signals on the 1H NMR spectrum as compared to the spectra of EY and EY-NHS. The current synthetic approach enables us to exercise precise control of the stoichiometry in the POM-dye conjugates—1:1 for the POM-EY system—as confirmed by elemental analysis. Comprehensive photophysical analysis of {Mo132}@Si6@EY@TBA by means of UV-Vis and steady-state and time-resolved fluorescence measurements points to an existing strong interaction between molecular orbitals of EY and {Mo132}, leading to a photoinduced electron transfer, partial fluorescence quenching, and elongation of the excited state’s lifetime. These findings demonstrate that using APTMS as an organosilicon linker in tandem with the Keplerate POM as a nanoscale template can be readily applied as a routine synthetic procedure for grafting various organic dyes or other organic molecules bearing a carboxylic group in their structure to the giant POM surface in a variety of aprotic organic solvents. Full article
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39 pages, 11881 KiB  
Review
Infrared Spectra of Small Radicals for Exoplanetary Spectroscopy: OH, NH, CN and CH: The State of Current Knowledge
by Svatopluk Civiš, Adam Pastorek, Martin Ferus, Sergei N. Yurchenko and Noor-Ines Boudjema
Molecules 2023, 28(8), 3362; https://doi.org/10.3390/molecules28083362 - 11 Apr 2023
Cited by 9 | Viewed by 3876
Abstract
In this study, we present a current state-of-the-art review of middle-to-near IR emission spectra of four simple astrophysically relevant molecular radicals—OH, NH, CN and CH. The spectra of these radicals were measured by means of time-resolved Fourier transform infrared spectroscopy in the 700–7500 [...] Read more.
In this study, we present a current state-of-the-art review of middle-to-near IR emission spectra of four simple astrophysically relevant molecular radicals—OH, NH, CN and CH. The spectra of these radicals were measured by means of time-resolved Fourier transform infrared spectroscopy in the 700–7500 cm−1 spectral range and with 0.07–0.02 cm−1 spectral resolution. The radicals were generated in a glow discharge of gaseous mixtures in a specially designed discharge cell. The spectra of short-lived radicals published here are of great importance, especially for the detailed knowledge and study of the composition of exoplanetary atmospheres in selected new planets. Today, with the help of the James Webb telescope and upcoming studies with the help of Plato and Ariel satellites, when the investigated spectral area is extended into the infrared spectral range, it means that detailed knowledge of the infrared spectra of not only stable molecules but also the spectra of short-lived radicals or ions, is indispensable. This paper follows a simple structure. Each radical is described in a separate chapter, starting with historical and actual theoretical background, continued by our experimental results and concluded by spectral line lists with assigned notation. Full article
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22 pages, 4546 KiB  
Article
Dispersion Performances and Fluorescent Behaviors of Naphthalic Anhydride Doped in Poly(acrylic acid) Frameworks for pH-Sensitive Ibuprofen Delivery via Fractal Evolution
by Xueqing Cui, Xiaoli Wang, Xiaohuan Xu, Bang Xu, Jihong Sun and Shiyang Bai
Polymers 2023, 15(3), 596; https://doi.org/10.3390/polym15030596 - 24 Jan 2023
Cited by 1 | Viewed by 2369
Abstract
The pH-responsive fluorescent P(1,8-naphthalic anhydride (NA)-acrylic acid (AA)) matrix was successfully prepared by a doping method using poly(acrylic acid) (PAA) as a pH-sensitive polymer and NA as a fluorescent tracer. The fluorescent behaviors of the used NA dispersed in PAA frameworks were demonstrated [...] Read more.
The pH-responsive fluorescent P(1,8-naphthalic anhydride (NA)-acrylic acid (AA)) matrix was successfully prepared by a doping method using poly(acrylic acid) (PAA) as a pH-sensitive polymer and NA as a fluorescent tracer. The fluorescent behaviors of the used NA dispersed in PAA frameworks were demonstrated based on fractal features combined with various characterizations, such as small-angle X-ray scattering (SAXS) patterns, photoluminescence (PL) spectra, scanning electron microscope (SEM) images, thermogravimetry (TG) profiles, Fourier transform infrared (FT-IR) spectroscopy, and time-resolved decays. The effects of NA-doping on the representative fluorescent P(NA-AA) were investigated, in which the fluorescent performance of the doped NA was emphasized. The results indicated that aggregated clusters of the doped NA were gradually serious with an increase in NA doping amount or extension of NA doping time, accompanied by an increase in mass fractal dimension (Dm) values. Meanwhile, the doped NA presented stable fluorescent properties during the swelling–shrinking process of PAA. Ibuprofen (IBU) was used as a model drug, and fractal evolutions of the obtained P(NA-AA) along with the drug loading and releasing behaviors were evaluated via SAXS patterns, in which the drug-loaded P(NA-AA) presented surface fractal (Ds) characteristics, while the Dm value varied from 2.94 to 2.58 during sustained drug-release in pH 2.0, indicating occurrences of its structural transformation from dense to loose with extension of IBU-releasing time. Finally, the cytotoxicity and cellular uptake behaviors of the obtained P(NA-AA) were preliminarily explored. These demonstrations revealed that the resultant P(NA-AA) should be a potential intelligent-responsive drug carrier for targeted delivery. Full article
(This article belongs to the Special Issue Advanced Polymeric Materials for Pharmaceutical Applications III)
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16 pages, 3870 KiB  
Article
Modus Operandi of a Pedalo-Type Molecular Switch: Insight from Dynamics and Theoretical Spectroscopy
by Mario Taddei, Marco Garavelli, Saeed Amirjalayer, Irene Conti and Artur Nenov
Molecules 2023, 28(2), 816; https://doi.org/10.3390/molecules28020816 - 13 Jan 2023
Viewed by 1804
Abstract
Molecular switches which can be triggered by light to interconvert between two or more well-defined conformation differing in their chemical or physical properties are fundamental for the development of materials with on-demand functionalities. Recently, a novel molecular switch based on a the azodicarboxamide [...] Read more.
Molecular switches which can be triggered by light to interconvert between two or more well-defined conformation differing in their chemical or physical properties are fundamental for the development of materials with on-demand functionalities. Recently, a novel molecular switch based on a the azodicarboxamide core has been reported. It exhibits a volume-conserving conformational change upon excitation, making it a promising candidate for embedding in confined environments. In order to rationally implement and efficiently utilize the azodicarboxamide molecular switch, detailed insight into the coordinates governing the excited-state dynamics is needed. Here, we report a detailed comparative picture of the molecular motion at the atomic level in the presence and absence of explicit solvent. Our hybrid quantum mechanics/molecular mechanics (QM/MM) excited state simulations reveal that, although the energy landscape is slightly modulated by the solvation, the light-induced motion is dominated by a bending-assisted pedalo-type motion independent of the solvation. To support the predicted mechanism, we simulate time-resolved IR spectroscopy from first principles, thereby resolving fingerprints of the light-induced switching process. Our calculated time-resolved data are in good agreement with previously reported measured spectra. Full article
(This article belongs to the Section Molecular Structure)
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35 pages, 11623 KiB  
Article
Polydimethylsiloxanes with Grafted Dibenzoylmethanatoboron Difluoride: Synthesis and Properties
by Anastasia S. Belova, Arevik G. Khchoyan, Tatiana M. Il’ina, Yuriy N. Kononevich, Dmitry S. Ionov, Viacheslav A. Sazhnikov, Dmitry A. Khanin, Galina G. Nikiforova, Viktor G. Vasil’ev and Aziz M. Muzafarov
Polymers 2022, 14(23), 5075; https://doi.org/10.3390/polym14235075 - 23 Nov 2022
Cited by 3 | Viewed by 1848
Abstract
A method for the preparation of polydimethylsiloxanes with grafted methoxy-substituted dibenzoylmethanatoboron difluoride has been described. The structures of prepared polymers were confirmed using NMR, IR spectroscopy and gel permeation chromatography methods. Their thermal properties were investigated using thermal gravimetric analysis, differential scanning calorimetry [...] Read more.
A method for the preparation of polydimethylsiloxanes with grafted methoxy-substituted dibenzoylmethanatoboron difluoride has been described. The structures of prepared polymers were confirmed using NMR, IR spectroscopy and gel permeation chromatography methods. Their thermal properties were investigated using thermal gravimetric analysis, differential scanning calorimetry and thermomechanical analysis. The prepared polymers had good thermal (Td5% up to 393 °C) and thermo-oxidative (Td5% = 413 °C) stability. The polymers started to transit in a viscous flow state at about 40 °C (for 3 a) and at about 20 °C (for 3 b). The viscoelastic characteristics of prepared polymers were determined in the sinusoidal oscillating vibrations mode. It was shown that the studied polymers at low frequencies at room temperature are viscoelastic fluids (G′ < G″). Increasing the frequency led to inversion (crossover) of dependences G′ and G″, which indicated the transition of polymers from viscous to elastomeric behavior characteristics, and the beginning of the formation of a physical network. Optical properties were studied using electron absorption, steady-state and time-resolved fluorescence spectroscopy. It was shown that intramolecular H-dimers exist in the ground state. The polymers studied had a bright fluorescence in the solution and in the solid state, consisting of bands of monomer and excimer emission. Thermally-activated delayed fluorescence was observed in the solution and the solid state. The prepared polymers possess intriguing properties that make them useful as optical materials, sensors or imaging agents. Full article
(This article belongs to the Special Issue Advanced Polymer-Based Composites as Smart Materials)
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7 pages, 1539 KiB  
Article
Ultrafast Continuum IR Generation and Its Application in IR Spectroscopy
by Chaiho Lim, Kwanghee Park, Yeongseok Chae, Kyungwon Kwak and Minhaeng Cho
Int. J. Mol. Sci. 2022, 23(21), 13245; https://doi.org/10.3390/ijms232113245 - 31 Oct 2022
Cited by 2 | Viewed by 3237
Abstract
The spectral range of femtosecond time-resolved infrared spectroscopy is limited by the bandwidth of mid-IR pulses (100~400 cm−1) generated from the combination of Ti:Sapphire amplifier, Optical Parametric Amplifier (OPA), and Difference Frequency Generation (DFG). To overcome this limitation, we implement a [...] Read more.
The spectral range of femtosecond time-resolved infrared spectroscopy is limited by the bandwidth of mid-IR pulses (100~400 cm−1) generated from the combination of Ti:Sapphire amplifier, Optical Parametric Amplifier (OPA), and Difference Frequency Generation (DFG). To overcome this limitation, we implement a compact continuum mid-IR source producing ultrafast pulses that span the frequency range from 1000 to 4200 cm−1 (from 10 to 2.4 μm), which utilize the mixing of fundamental, second-harmonic, and third-harmonic of 800 nm pulse in the air. After building an IR spectrometer with continuum IR and a monochromator, we found that the distortion of the measured IR spectrum originated from the contamination of higher-order diffraction. We used bandpass filters to eliminate the higher-order contributions and correct the measured IR spectrum. We further characterized the spectral properties of fundamental, second-harmonic, and third-harmonic fields after the plasmonic filamentation process, which helps to improve the efficiency of the continuum IR generation. Using the generated continuum IR pulses, we measured the IR absorption spectrum of a water–benzonitrile mixture, which was found to be consistent with the spectrum obtained with a commercial FT-IR spectrometer. The present work will be useful for the efficient generation of continuum IR pulses for IR pump-probe and two-dimensional IR spectroscopy experiments in the future. Full article
(This article belongs to the Special Issue State-of-the-Art Physical Chemistry and Chemical Physics in Korea)
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15 pages, 7947 KiB  
Article
Hydroxyl Spectroscopy of Laboratory Air Laser-Ignition
by Christian G. Parigger
Foundations 2022, 2(4), 934-948; https://doi.org/10.3390/foundations2040064 - 18 Oct 2022
Cited by 1 | Viewed by 2236
Abstract
This work investigates spatial and temporal distributions of hydroxyl, OH, in laser-plasma in laboratory air at standard ambient temperature and pressure. Of interest are determination of temperature and density of OH and establishment of a correlation of molecular OH emission spectra with shadow [...] Read more.
This work investigates spatial and temporal distributions of hydroxyl, OH, in laser-plasma in laboratory air at standard ambient temperature and pressure. Of interest are determination of temperature and density of OH and establishment of a correlation of molecular OH emission spectra with shadow graphs for time delays of 50 to 100 μs, analogous to previous work on shadow graph and emission spectroscopy correlation for cyanide, CN, in gas mixtures and for time delays of the order of 1 μs. Wavelength- and sensitivity-corrected spatiotemporal data analysis focuses on temperature inferences using molecular OH emission spectroscopy. Near-IR radiation from a Q-switched laser device initiates optical breakdown in laboratory air. The laser device provides 6 ns, up to 850 milli Joule, pulses at a wavelength of 1064 nm, and focal irradiance in the range of 1 to 10 terawatt per centimeter-squared. Frequency doubled beams are utilized for capturing shadow graphs for visualization of the breakdown kernel at time delays in the range of 0.1 to 100 μs. OH emission spectra of the laser plasma, spatially resolved along the slit dimension, are recorded in the wavelength range of 298 nm to 321 nm, and with gate widths adjusted to 10 μs for the intensified charge-coupled device that is mounted at the exit plane of a 0.64 m Czerny-Turner configuration spectrometer. Diatomic OH signals occur due to recombination of the plasma and are clearly distinguishable for time delays larger than 50 μs, but are masked by spectra of N2 early in the plasma decay. Full article
(This article belongs to the Special Issue Advances in Fundamental Physics II)
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10 pages, 3968 KiB  
Communication
Monolithic, Optically Coupled, Multi-Section Mid-IR Quantum Cascade Lasers
by Kamil Pierściński, Dorota Pierścińska, Grzegorz Sobczak, Aleksandr Kuźmicz, Krzysztof Chmielewski, Katarzyna Krajewska and Piotr Gutowski
Photonics 2021, 8(12), 583; https://doi.org/10.3390/photonics8120583 - 16 Dec 2021
Viewed by 3037
Abstract
Mid-infrared (mid-IR λ ≈ 3–12 μm), single-mode-emission Quantum Cascade Lasers (QCLs) are of significant interest for a wide range of applications, especially as the laser sources are chosen for laser absorption spectroscopy. In this work, we present the design, fabrication and characterization of [...] Read more.
Mid-infrared (mid-IR λ ≈ 3–12 μm), single-mode-emission Quantum Cascade Lasers (QCLs) are of significant interest for a wide range of applications, especially as the laser sources are chosen for laser absorption spectroscopy. In this work, we present the design, fabrication and characterization of multi-section, coupled-cavity, mid-IR quantum cascade lasers. The purpose of this work is to propose a design modification for a coupled-cavity device, yielding a single-mode emission with a longer range of continuous tuning during the pulse, in contrast to a 2-section device. This effect was obtained and demonstrated in the work. The proposed design of a 3-section coupled-cavity QCL allows for a single-mode emission with 35 dB side-mode suppression ratio. Additionally, the time-resolved spectra of the wavelength shift during pulse operation, show a continuous tuning of ~3 cm−1 during the 2 μs pulse. The devices were fabricated in a slightly modified, standard laser process using dry etching. Full article
(This article belongs to the Section Lasers, Light Sources and Sensors)
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10 pages, 1839 KiB  
Article
A Luminescent, Water-Soluble Ir(III) Complex as a Potential Photosensitizer for Two-Photon Photodynamic Therapy
by Elisabeta I. Szerb, Sharmistha Chatterjee, Massimo La Deda, Giovanna Palermo, Lucie Sancey, Giuseppe Strangi and Loredana Ricciardi
Appl. Sci. 2021, 11(24), 11596; https://doi.org/10.3390/app112411596 - 7 Dec 2021
Cited by 3 | Viewed by 2305
Abstract
This work reports the study of two-photon induced properties of a highly luminescent cyclometalated Ir(III) complex, [Ir(ppy)2(en)] OOCCH3 (1), ppy = 2-phenylpyridine, en = ethylenediamine. Steady-state and time-resolved fluorescence measurements were performed by exciting 1 at the biologically [...] Read more.
This work reports the study of two-photon induced properties of a highly luminescent cyclometalated Ir(III) complex, [Ir(ppy)2(en)] OOCCH3 (1), ppy = 2-phenylpyridine, en = ethylenediamine. Steady-state and time-resolved fluorescence measurements were performed by exciting 1 at the biologically relevant wavelength of 800 nm, whereas, the generation of singlet oxygen (1O2) was evaluated using 9,10-Anthracenediyl-bis(methylene)dimalonic acid (ABDA) as a detection probe. Preliminary in vitro experiments with U87-MG cells were performed, showing the potential of this compound as a two-photon photodynamic therapy (2P-PDT) agent at NIR wavelengths. Full article
(This article belongs to the Special Issue New Trends in Functional and Multifunctional Advanced Materials)
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16 pages, 4317 KiB  
Article
Synthesis, Biomacromolecular Interactions, Photodynamic NO Releasing and Cellular Imaging of Two [RuCl(qn)(Lbpy)(NO)]X Complexes
by Luna Song, Hehe Bai, Chenyang Liu, Wenjun Gong, Ai Wang, Li Wang, Yi Zhao, Xuan Zhao and Hongfei Wang
Molecules 2021, 26(9), 2545; https://doi.org/10.3390/molecules26092545 - 27 Apr 2021
Cited by 5 | Viewed by 2454
Abstract
Two light-activated NO donors [RuCl(qn)(Lbpy)(NO)]X with 8-hydroxyquinoline (qn) and 2,2′-bipyridine derivatives (Lbpy) as co-ligands were synthesized (Lbpy1 = 4,4′-dicarboxyl-2,2′-dipyridine, X = Cl and Lbpy2 = 4,4′-dimethoxycarbonyl-2,2′-dipyridine, X = NO3), and characterized using ultraviolet–visible (UV-vis) spectroscopy, Fourier transform [...] Read more.
Two light-activated NO donors [RuCl(qn)(Lbpy)(NO)]X with 8-hydroxyquinoline (qn) and 2,2′-bipyridine derivatives (Lbpy) as co-ligands were synthesized (Lbpy1 = 4,4′-dicarboxyl-2,2′-dipyridine, X = Cl and Lbpy2 = 4,4′-dimethoxycarbonyl-2,2′-dipyridine, X = NO3), and characterized using ultraviolet–visible (UV-vis) spectroscopy, Fourier transform infrared (FT-IR) spectroscopy, nuclear magnetic resonance (1H NMR), elemental analysis and electrospray ionization mass spectrometry (ESI-MS) spectra. The [RuCl(qn)(Lbpy2)(NO)]NO3 complex was crystallized and exhibited distorted octahedral geometry, in which the Ru–N(O) bond length was 1.752(6) Å and the Ru–N–O angle was 177.6(6)°. Time-resolved FT-IR and electron paramagnetic resonance (EPR) spectra were used to confirm the photoactivated NO release of the complexes. The binding constant (Kb) of two complexes with human serum albumin (HSA) and DNA were quantitatively evaluated using fluorescence spectroscopy, Ru-Lbpy1 (Kb~106 with HSA and ~104 with DNA) had higher affinity than Ru-Lbpy2. The interactions between the complexes and HSA were investigated using matrix assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-MS) and EPR spectra. HSA can be used as a carrier to facilitate the release of NO from the complexes upon photoirradiation. The confocal imaging of photo-induced NO release in living cells was successfully observed with a fluorescent NO probe. Moreover, the photocleavage of pBR322 DNA for the complexes and the effect of different Lbpy substituted groups in the complexes on their reactivity were analyzed. Full article
(This article belongs to the Special Issue Anticancer Compounds with Different Biological Targets)
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12 pages, 2115 KiB  
Article
Fiber-Coupled Quartz-Enhanced Photoacoustic Spectroscopy System for Methane and Ethane Monitoring in the Near-Infrared Spectral Range
by Giansergio Menduni, Fabrizio Sgobba, Stefano Dello Russo, Ada Cristina Ranieri, Angelo Sampaolo, Pietro Patimisco, Marilena Giglio, Vittorio M.N. Passaro, Sebastian Csutak, Dario Assante, Ezio Ranieri, Eric Geoffrion and Vincenzo Spagnolo
Molecules 2020, 25(23), 5607; https://doi.org/10.3390/molecules25235607 - 28 Nov 2020
Cited by 39 | Viewed by 3710
Abstract
We report on a fiber-coupled, quartz-enhanced photoacoustic spectroscopy (QEPAS) near-IR sensor for sequential detection of methane (CH4 or C1) and ethane (C2H6 or C2) in air. With the aim of developing a lightweight, compact, low-power-consumption sensor suitable for unmanned [...] Read more.
We report on a fiber-coupled, quartz-enhanced photoacoustic spectroscopy (QEPAS) near-IR sensor for sequential detection of methane (CH4 or C1) and ethane (C2H6 or C2) in air. With the aim of developing a lightweight, compact, low-power-consumption sensor suitable for unmanned aerial vehicles (UAVs)-empowered environmental monitoring, an all-fiber configuration was designed and realized. Two laser diodes emitting at 1653.7 nm and 1684 nm for CH4 and C2H6 detection, respectively, were fiber-combined and fiber-coupled to the collimator port of the acoustic detection module. No cross talk between methane and ethane QEPAS signal was observed, and the related peak signals were well resolved. The QEPAS sensor was calibrated using gas samples generated from certified concentrations of 1% CH4 in N2 and 1% C2H6 in N2. At a lock-in integration time of 100 ms, minimum detection limits of 0.76 ppm and 34 ppm for methane and ethane were achieved, respectively. The relaxation rate of CH4 in standard air has been investigated considering the effects of H2O, N2 and O2 molecules. No influence on the CH4 QEPAS signal is expected when the water vapor concentration level present in air varies in the range 0.6–3%. Full article
(This article belongs to the Special Issue Recent Advances in Photoacoustic and Photothermal Gas Spectroscopy)
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16 pages, 4175 KiB  
Article
Tracing the Photoaddition of Pharmaceutical Psoralens to DNA
by Janina Diekmann, Isabell Theves, Kristoffer A. Thom and Peter Gilch
Molecules 2020, 25(22), 5242; https://doi.org/10.3390/molecules25225242 - 10 Nov 2020
Cited by 18 | Viewed by 5024
Abstract
The psoralens 8-methoxypsoralen (8-MOP), 4,5′,8-trimethylpsoralen (TMP) and 5-methoxypsoralen (5-MOP) find clinical application in PUVA (psoralen + UVA) therapy. PUVA treats skin diseases like psoriasis and atopic eczema. Psoralens target the DNA of cells. Upon photo-excitation psoralens bind to the DNA base thymine. This [...] Read more.
The psoralens 8-methoxypsoralen (8-MOP), 4,5′,8-trimethylpsoralen (TMP) and 5-methoxypsoralen (5-MOP) find clinical application in PUVA (psoralen + UVA) therapy. PUVA treats skin diseases like psoriasis and atopic eczema. Psoralens target the DNA of cells. Upon photo-excitation psoralens bind to the DNA base thymine. This photo-binding was studied using steady-state UV/Vis and IR spectroscopy as well as nanosecond transient UV/Vis absorption. The experiments show that the photo-addition of 8-MOP and TMP involve the psoralen triplet state and a biradical intermediate. 5-MOP forms a structurally different photo-product. Its formation could not be traced by the present spectroscopic technique. Full article
(This article belongs to the Special Issue DNA Damage and Repair)
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14 pages, 3509 KiB  
Article
Probing the Proton-Loading Site of Cytochrome C Oxidase Using Time-Resolved Fourier Transform Infrared Spectroscopy
by Elena Gorbikova, Sergey A. Samsonov and Ruslan Kalendar
Molecules 2020, 25(15), 3393; https://doi.org/10.3390/molecules25153393 - 27 Jul 2020
Cited by 3 | Viewed by 3410
Abstract
Crystal structure analyses at atomic resolution and FTIR spectroscopic studies of cytochrome c oxidase have yet not revealed protonation or deprotonation of key sites of proton transfer in a time-resolved mode. Here, a sensitive technique to detect protolytic transitions is employed. In this [...] Read more.
Crystal structure analyses at atomic resolution and FTIR spectroscopic studies of cytochrome c oxidase have yet not revealed protonation or deprotonation of key sites of proton transfer in a time-resolved mode. Here, a sensitive technique to detect protolytic transitions is employed. In this work, probing a proton-loading site of cytochrome c oxidase from Paracoccus denitrificans with time-resolved Fourier transform infrared spectroscopy is presented for the first time. For this purpose, variants with single-site mutations of N131V, D124N, and E278Q, the key residues in the D-channel, were studied. The reaction of mutated CcO enzymes with oxygen was monitored and analyzed. Seven infrared bands in the “fast” kinetic spectra were found based on the following three requirements: (1) they are present in the “fast” phases of N131V and D124N mutants, (2) they have reciprocal counterparts in the “slow” kinetic spectra in these mutants, and (3) they are absent in “fast” kinetic spectra of the E278Q mutant. Moreover, the double-difference spectra between the first two mutants and E278Q revealed more IR bands that may belong to the proton-loading site protolytic transitions. From these results, it is assumed that several polar residues and/or water molecule cluster(s) share a proton as a proton-loading site. This site can be propionate itself (holding only a fraction of H+), His403, and/or water cluster(s). Full article
(This article belongs to the Special Issue Cellular and Molecular Bioengineering)
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15 pages, 907 KiB  
Article
Halogen-Bond Assisted Photoinduced Electron Transfer
by Bogdan Dereka, Ina Fureraj, Arnulf Rosspeintner and Eric Vauthey
Molecules 2019, 24(23), 4361; https://doi.org/10.3390/molecules24234361 - 29 Nov 2019
Cited by 5 | Viewed by 5323
Abstract
The formation of a halogen-bond (XB) complex in the excited state was recently reported with a quadrupolar acceptor–donor–acceptor dye in two iodine-based liquids (J. Phys. Chem. Lett. 2017, 8, 3927–3932). The ultrafast decay of this excited complex to the ground [...] Read more.
The formation of a halogen-bond (XB) complex in the excited state was recently reported with a quadrupolar acceptor–donor–acceptor dye in two iodine-based liquids (J. Phys. Chem. Lett. 2017, 8, 3927–3932). The ultrafast decay of this excited complex to the ground state was ascribed to an electron transfer quenching by the XB donors. We examined the mechanism of this process by investigating the quenching dynamics of the dye in the S1 state using the same two iodo-compounds diluted in inert solvents. The results were compared with those obtained with a non-halogenated electron acceptor, fumaronitrile. Whereas quenching by fumaronitrile was found to be diffusion controlled, that by the two XB compounds is slower, despite a larger driving force for electron transfer. A Smoluchowski–Collins–Kimball analysis of the excited-state population decays reveals that both the intrinsic quenching rate constant and the quenching radius are significantly smaller with the XB compounds. These results point to much stronger orientational constraint for quenching with the XB compounds, indicating that electron transfer occurs upon formation of the halogen bond. Full article
(This article belongs to the Special Issue Halogen Bonds: Combining Experiment and Theory)
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