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Search Results (669)

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Keywords = symbiotic systems

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13 pages, 2939 KiB  
Review
A Review of Maricultural Wastewater Treatment Using an MBR: Insights into the Mechanism of Membrane Fouling Mitigation Through a Microalgal–Bacterial Symbiotic and Microbial Ecological Network
by Yijun You, Shuyu Zhao, Binghan Xie, Zhipeng Li, Weijia Gong, Guoyu Zhang, Qinghao Li, Xiangqian Zhao, Zhaofeng Xin, Jinkang Wu, Yuanyuan Gao and Han Xiang
Membranes 2025, 15(8), 234; https://doi.org/10.3390/membranes15080234 - 1 Aug 2025
Viewed by 170
Abstract
Membrane bioreactors (MBRs) have been utilized for maricultural wastewater treatment, where high-salinity stress results in dramatic membrane fouling in the actual process. A microalgal–bacterial symbiotic system (MBSS) offers advantages for photosynthetic oxygen production, dynamically regulating the structure of extracellular polymeric substances (EPSs) and [...] Read more.
Membrane bioreactors (MBRs) have been utilized for maricultural wastewater treatment, where high-salinity stress results in dramatic membrane fouling in the actual process. A microalgal–bacterial symbiotic system (MBSS) offers advantages for photosynthetic oxygen production, dynamically regulating the structure of extracellular polymeric substances (EPSs) and improving the salinity tolerance of bacteria and algae. This study centered on the mechanisms of membrane fouling mitigation via the microalgal–bacterial interactions in the MBSS, including improving the pollutant removal, optimizing the system parameters, and controlling the gel layer formation. Moreover, the contribution of electrochemistry to decreasing the inhibitory effects of high-salinity stress was investigated in the MBSS. Furthermore, patterns of shifts in microbial communities and the impacts have been explored using metagenomic technology. Finally, this review aims to offer new insights for membrane fouling mitigation in actual maricultural wastewater treatment. Full article
(This article belongs to the Special Issue Emerging Superwetting Membranes: New Advances in Water Treatment)
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18 pages, 1587 KiB  
Article
Urban Mangroves Under Threat: Metagenomic Analysis Reveals a Surge in Human and Plant Pathogenic Fungi
by Juliana Britto Martins de Oliveira, Mariana Barbieri, Dario Corrêa-Junior, Matheus Schmitt, Luana Lessa R. Santos, Ana C. Bahia, Cláudio Ernesto Taveira Parente and Susana Frases
Pathogens 2025, 14(8), 759; https://doi.org/10.3390/pathogens14080759 (registering DOI) - 1 Aug 2025
Viewed by 194
Abstract
Coastal ecosystems are increasingly threatened by climate change and anthropogenic pressures, which can disrupt microbial communities and favor the emergence of pathogenic organisms. In this study, we applied metagenomic analysis to characterize fungal communities in sediment samples from an urban mangrove subjected to [...] Read more.
Coastal ecosystems are increasingly threatened by climate change and anthropogenic pressures, which can disrupt microbial communities and favor the emergence of pathogenic organisms. In this study, we applied metagenomic analysis to characterize fungal communities in sediment samples from an urban mangrove subjected to environmental stress. The results revealed a fungal community with reduced richness—28% lower than expected for similar ecosystems—likely linked to physicochemical changes such as heavy metal accumulation, acidic pH, and eutrophication, all typical of urbanized coastal areas. Notably, we detected an increase in potentially pathogenic genera, including Candida, Aspergillus, and Pseudoascochyta, alongside a decrease in key saprotrophic genera such as Fusarium and Thelebolus, indicating a shift in ecological function. The fungal assemblage was dominated by the phyla Ascomycota and Basidiomycota, and despite adverse conditions, symbiotic mycorrhizal fungi remained present, suggesting partial resilience. A considerable fraction of unclassified fungal taxa also points to underexplored microbial diversity with potential ecological or health significance. Importantly, this study does not aim to compare pristine and contaminated environments, but rather to provide a sanitary alert by identifying the presence and potential proliferation of pathogenic fungi in a degraded mangrove system. These findings highlight the sensitivity of mangrove fungal communities to environmental disturbance and reinforce the value of metagenomic approaches for monitoring ecosystem health. Incorporating fungal metagenomic surveillance into environmental management strategies is essential to better understand biodiversity loss, ecological resilience, and potential public health risks in degraded coastal environments. Full article
(This article belongs to the Section Fungal Pathogens)
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16 pages, 782 KiB  
Review
The Journey of the Bacterial Symbiont Through the Olive Fruit Fly: Lessons Learned and Open Questions
by Inga Siden-Kiamos, Georgia Pantidi and John Vontas
Insects 2025, 16(8), 789; https://doi.org/10.3390/insects16080789 (registering DOI) - 31 Jul 2025
Viewed by 322
Abstract
Dysbiosis is a strategy to control insect pests through disrupting symbiotic bacteria essential for their life cycle. The olive fly, Bactrocera oleae, has been considered a suitable system for dysbiosis, as the insect is strictly dependent on its unique symbiont Candidatus Erwinia [...] Read more.
Dysbiosis is a strategy to control insect pests through disrupting symbiotic bacteria essential for their life cycle. The olive fly, Bactrocera oleae, has been considered a suitable system for dysbiosis, as the insect is strictly dependent on its unique symbiont Candidatus Erwinia dacicola. Here, we review older and recent results from studies of the interaction of the symbiont and its host fly. We then discuss possible methods for disrupting the symbiosis as a means to control the fly. Specifically, we summarize studies using microscopy methods that have investigated in great detail the organs where the bacterium resides and it is always extracellular. Furthermore, we discuss how genome sequences of both host and bacterium can provide valuable resources for understanding the interaction and transcriptomic analyses that have revealed important insights that can be exploited for dysbiosis strategies. We also assess experiments where compounds have been tested against the symbiont. The hitherto limited efficacy in decreasing bacterial abundance suggests that novel molecules and/or new ways for the delivery of agents will be important for successful dysbiosis strategies. Finally, we discuss how gene drive methods could be implemented in olive fly control, though a number of hurdles would need to be overcome. Full article
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13 pages, 2088 KiB  
Article
Assessment of Effects of Storage Time on Fermentation Profile, Chemical Composition, Bacterial Community Structure, Co-Occurrence Network, and Pathogenic Risk in Corn Stover Silage
by Zhumei Du, Ying Meng, Yifan Chen, Shaojuan Cui, Siran Wang and Xuebing Yan
Fermentation 2025, 11(8), 425; https://doi.org/10.3390/fermentation11080425 - 23 Jul 2025
Viewed by 421
Abstract
In order to achieve the efficient utilization of agricultural by-products and overcome the bottleneck of animal feed shortages in dry seasons, this study utilized corn stover (CS; Zea mays L.) as a material to systematically investigate the dynamic changes in the fermentation quality, [...] Read more.
In order to achieve the efficient utilization of agricultural by-products and overcome the bottleneck of animal feed shortages in dry seasons, this study utilized corn stover (CS; Zea mays L.) as a material to systematically investigate the dynamic changes in the fermentation quality, bacterial community structure, and pathogenic risk of silage under different fermentation times (0, 3, 7, 15, and 30 days). CS has high nutritive value, including crude protein and sugar, and can serve as a carbon source and a nitrogen source for silage fermentation. After ensiling, CS silage (CSTS) exhibited excellent fermentation quality, characterized by relatively high lactic acid content, low pH, and ammonia nitrogen content within an acceptable range. In addition, neither propionic acid nor butyric acid was detected in any of the silages. CS exhibited high α-diversity, with Serratia marcescens being the dominant bacterial species. After ensiling, the α-diversity significantly (p < 0.05) decreased, and Lactiplantibacillus plantarum was the dominant species during the fermentation process. With the extension of fermentation days, the relative abundance of Lactiplantibacillus plantarum significantly (p < 0.05) increased, reaching a peak and stabilizing between 15 and 30 days. Ultimately, lactic acid bacteria dominated and constructed a microbial symbiotic network system. In the bacterial community of CSTS, the abundance of “potential pathogens” was significantly (p < 0.01) lower than that of CS. These results provide data support for establishing a microbial regulation theory for silage fermentation, thereby improving the basic research system for the biological conversion of agricultural by-products and alleviating feed shortages in dry seasons. Full article
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14 pages, 1230 KiB  
Article
Soybean (Glycine Max L.) Grain Yield Response to Inoculation with Novel Bradyrhizobia Strains Across Different Soil Fertility Conditions in Zimbabwe
by Akinson Tumbure, Grace Kanonge, Collis S. Mukungurutse, Cathrine Mushangwe, Tonny P. Tauro and Mazvita S. Chiduwa
Nitrogen 2025, 6(3), 59; https://doi.org/10.3390/nitrogen6030059 - 23 Jul 2025
Viewed by 227
Abstract
The agronomic effectiveness of biofertilizers is influenced by strain origin, genetic identity, crop genotype, soil type, and environmental conditions. For best results, both the plant and rhizobia strain must be adapted to the common harsh soil conditions in the tropics. While plant varieties [...] Read more.
The agronomic effectiveness of biofertilizers is influenced by strain origin, genetic identity, crop genotype, soil type, and environmental conditions. For best results, both the plant and rhizobia strain must be adapted to the common harsh soil conditions in the tropics. While plant varieties have changed over the years, complementary research on new strains effectiveness under varying soil fertility conditions has lagged in southern Africa. Seven field experiments were established in the main soybean-producing areas of Zimbabwe in the north, central, and north–east regions to evaluate agronomic benefits of new rhizobia strains against the current exotic commercial strain (MAR1491). One site was irrigated (site 3), and the other six sites were rainfed (sites 1, 2, 4, 5, 6, and 7). While trends in inoculation response varied from site to site due to site conditions, inoculation with the strains NAZ15, NAZ25, and NAK128 consistently yielded high grain yields, which were similar to the current commercial strain MAR1491 and to application of mineral fertilizer (51.75 and 100 kg N ha−1). Grain yield levels were generally below 2 t ha−1 for sites 2, 3, and 5 and above 2 t ha−1 for sites 1, 4, and 6, while for the irrigated site 3, they ranged upwards of 3 t ha−1. When irrigated, all strains except NAK9 performed similarly in terms of grain yields and aboveground N uptake. Further testing on the inclusion of the indigenous strains NAZ15, NAZ25, and NAK128 in multi-strain commercial inoculant production targeting application in regions and soils where they excel beyond the current exotic strain MAR1491 is recommended. Full article
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15 pages, 1006 KiB  
Review
Multifunctional Applications of Biofloc Technology (BFT) in Sustainable Aquaculture: A Review
by Changwei Li and Limin Dai
Fishes 2025, 10(7), 353; https://doi.org/10.3390/fishes10070353 - 17 Jul 2025
Viewed by 378
Abstract
Biofloc technology (BFT), traditionally centered on feed supplementation and water purification in aquaculture, harbors untapped multifunctional potential as a sustainable resource management platform. This review systematically explores beyond conventional applications. BFT leverages microbial consortia to drive resource recovery, yielding bioactive compounds with antibacterial/antioxidant [...] Read more.
Biofloc technology (BFT), traditionally centered on feed supplementation and water purification in aquaculture, harbors untapped multifunctional potential as a sustainable resource management platform. This review systematically explores beyond conventional applications. BFT leverages microbial consortia to drive resource recovery, yielding bioactive compounds with antibacterial/antioxidant properties, microbial proteins for efficient feed production, and algae biomass for nutrient recycling and bioenergy. In environmental remediation, its porous microbial aggregates remove microplastics and heavy metals through integrated physical, chemical, and biological mechanisms, addressing critical aquatic pollution challenges. Agri-aquatic integration systems create symbiotic loops where nutrient-rich aquaculture effluents fertilize plant cultures, while plants act as natural filters to stabilize water quality, reducing freshwater dependence and enhancing resource efficiency. Emerging applications, including pigment extraction for ornamental fish and the anaerobic fermentation of biofloc waste into organic amendments, further demonstrate its alignment with circular economy principles. While technical advancements highlight its capacity to balance productivity and ecological stewardship, challenges in large-scale optimization, long-term system stability, and economic viability necessitate interdisciplinary research. By shifting focus to its underexplored functionalities, this review positions BFT as a transformative technology capable of addressing interconnected global challenges in food security, pollution mitigation, and sustainable resource use, offering a scalable framework for the future of aquaculture and beyond. Full article
(This article belongs to the Section Sustainable Aquaculture)
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27 pages, 854 KiB  
Article
An Integrated Symbiotic Production System Design of Agro-Based Industries with Profit and Environmental Objectives
by Melike Kaya Akça, Mete Gündoğan and Gerçek Budak
Sustainability 2025, 17(14), 6396; https://doi.org/10.3390/su17146396 - 12 Jul 2025
Viewed by 309
Abstract
Establishing a sustainable production system requires a more efficient utilization of resources and the adoption of cleaner production methodologies. Specifically, industrial symbiosis promotes collaboration among interconnected industries by exchanging waste, byproducts, and utilities, thereby providing innovative ways to enhance the efficiency of production [...] Read more.
Establishing a sustainable production system requires a more efficient utilization of resources and the adoption of cleaner production methodologies. Specifically, industrial symbiosis promotes collaboration among interconnected industries by exchanging waste, byproducts, and utilities, thereby providing innovative ways to enhance the efficiency of production processes. However, the sustainability of agricultural products and agro-based industries is essential for human survival. This study proposed an integrated symbiotic production system that targets agro-based industries. The system includes seven plants: a sugar production plant, a corn-integrated industrial plant, an alcohol production plant, a feed production plant, a fertilizer plant, a bioethanol production plant, and a wastewater treatment plant. The study aimed to design a sustainable industrial system that shares byproducts, waste, and water reuse. Symbiotic relations between production plants are designed in a provided multi-objective optimization model that considers both the mitigation of CO2 emissions and the maximization of system profit. The multi-objective model with the epsilon-constraint method results in Pareto-efficient solutions that address the tradeoff between the objectives. This allows decision makers to select a suitable one among the solution set that prioritizes conflicting objectives. We developed ten scenarios to assess costs, revenue, profit, and CO2 emissions, offering significant insights into how model parameters affect managerial knowledge. This study also addresses environmental and economic concerns, thereby making the development of agro-based industries more sustainable. Full article
(This article belongs to the Special Issue Sustainable Production and Supply Chain Management)
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19 pages, 822 KiB  
Article
Arbuscular Mycorrhizal Fungi in Common Bean Roots: Agricultural Impact and Environmental Influence
by Ana Paula Rodiño, Olga Aguín, Juan Leonardo Tejada-Hinojoza and Antonio Miguel De Ron
Agriculture 2025, 15(13), 1452; https://doi.org/10.3390/agriculture15131452 - 5 Jul 2025
Viewed by 449
Abstract
Although many plant families are predominantly mycorrhizal, few symbiotic relationships between plants and arbuscular mycorrhizal fungi (AMF) have been thoroughly studied. Mycorrhized plants tend to exhibit greater tolerance to soil-borne pathogens and enhanced plant defence. Legumes, including common bean (Phaseolus vulgaris L.), [...] Read more.
Although many plant families are predominantly mycorrhizal, few symbiotic relationships between plants and arbuscular mycorrhizal fungi (AMF) have been thoroughly studied. Mycorrhized plants tend to exhibit greater tolerance to soil-borne pathogens and enhanced plant defence. Legumes, including common bean (Phaseolus vulgaris L.), are essential sources of protein globally. To improve common bean productivity, identifying efficient native microsymbionts is crucial. This study aimed to identify native AMF associated with common bean roots that could act as biostimulants and protect against soil diseases under varying environmental conditions. Agronomic trials were conducted at MBG-CSIC (Pontevedra, Spain) in 2021 and 2022, testing combinations of nitrogen fertilization, Burkholderia alba, Trichoderma harzianum, and a control. Traits such as nodulation, biomass, plant vigor, disease severity, nutrient content, and yield were evaluated. Four AMF species across three genera were identified. No consistent pattern was observed in AMF influence on agronomic traits. However, reduced mycorrhization in 2022 was associated with decreased nodulation, likely due to higher temperatures. Surprisingly, yields were higher in 2022 despite lower colonization. These findings suggest that intelligent use of AMF could reduce pesticide use, enhance sustainability, and promote healthier food systems. Continued research and conservation efforts are essential to optimize their benefits in legume production. Full article
(This article belongs to the Section Agricultural Systems and Management)
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19 pages, 662 KiB  
Review
Role of Gut Microbiota and Metabolite Remodeling on the Development and Management of Rheumatoid Arthritis: A Narrative Review
by Yichen Yu, Fulin Jin, Lijun Wang, Ji Cheng and Shifeng Pan
Vet. Sci. 2025, 12(7), 642; https://doi.org/10.3390/vetsci12070642 - 5 Jul 2025
Viewed by 604
Abstract
Rheumatoid arthritis (RA) is a chronic autoimmune disease that has a serious impact on both human health and animal production. The gut microbiota is a large and complex symbiotic ecosystem in animals, and the imbalance of gut microbiota is closely related to the [...] Read more.
Rheumatoid arthritis (RA) is a chronic autoimmune disease that has a serious impact on both human health and animal production. The gut microbiota is a large and complex symbiotic ecosystem in animals, and the imbalance of gut microbiota is closely related to the pathogenesis of numerous diseases, including RA. The interactions among the gut microbiota, intestinal barrier, and immune system play key roles in maintaining intestinal homeostasis and affecting the development of RA. Regulating intestinal flora and metabolites provides new ideas for the prevention and treatment of RA. Probiotics can regulate the balance of intestinal flora and metabolites, improve the immune environment, and provide novel therapeutic strategies against RA. In order to summarize the role of gut microbiota and metabolite remodeling in the development and management of RA, this review will elaborate on the role of intestinal flora imbalance in the pathogenesis of RA and assess prospective therapeutic approaches that target the gut flora. Understanding the interaction among intestinal flora, metabolites, and RA will help to clarify the pathogenesis of RA and develop innovative and personalized therapeutic interventions against chronic autoimmune diseases. Full article
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19 pages, 1898 KiB  
Article
Reducing Nitrogen Input Increases the Efficacy of Soil Nitrogen Utilization by Regulating Cotton–Arbuscular Mycorrhizal Fungi–Soil Nitrogen Interactions
by Hushan Wang, Yunzhu He, Zihui Shen, Mengjuan Liu, Wangfeng Zhang and Xiaozhen Pu
Nitrogen 2025, 6(3), 55; https://doi.org/10.3390/nitrogen6030055 - 3 Jul 2025
Viewed by 314
Abstract
Crops and arbuscular mycorrhizal (AM) fungi can enhance nitrogen (N) transformation and utilization efficiency in the soil, and this effect is regulated by soil N application rates. However, it remains unclear whether the N utilization efficiency of cotton can be improved through the [...] Read more.
Crops and arbuscular mycorrhizal (AM) fungi can enhance nitrogen (N) transformation and utilization efficiency in the soil, and this effect is regulated by soil N application rates. However, it remains unclear whether the N utilization efficiency of cotton can be improved through the symbiosis of cotton with AM fungi under reduced N application rates. Therefore, we conducted 15N labeling experiments using a compartmentalized culture system with Gossypium hirsutum L. as the experimental plant. We established three N treatments (0.15 g·kg−1, 0.10 g·kg−1 and 0 g·kg−1) to investigate the effects of different fertilization rates on N utilization, soil N priming effects, and differences in N accumulation in various parts of cotton plants within the soil–AM fungi–cotton system. The results indicate that under reduced N application, symbiosis between cotton and AM fungi increased the N fertilizer utilization efficiency and the soil N priming effect. Specifically, reducing the fertilization dosage from 0.15 g·kg−1 to 0.10 g·kg−1 increased the N fertilizer utilization efficiency and soil N priming effect by 8.87% and 11.67%, respectively, and decreased the N loss rate by 7.02%. The symbiosis between cotton and AM fungi after N reduction significantly increased N accumulation in the roots and leaves. Moreover, the N fertilizer content accounted for 5.89% of the total N content in roots. Overall, when N application was reduced, symbiosis with AM fungi effectively promoted the rhizosphere N priming effect, which reconciled the conflict in N nutrient allocation within cotton and thus enabled the efficient utilization of soil N. Full article
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21 pages, 8197 KiB  
Article
Organic Farming to Improve Soil Quality and the Functional Structure of Soil Microbial Communities
by Ruilong Huang, Wei Li, Mengting Niu and Bo Hu
Agriculture 2025, 15(13), 1381; https://doi.org/10.3390/agriculture15131381 - 27 Jun 2025
Cited by 1 | Viewed by 490
Abstract
Organic agriculture is widely regarded as an important approach to reducing biodiversity loss and promoting sustainable agricultural development compared to conventional agriculture. Notably, organic farming practices have substantially boosted the diversity of soil microbial communities. However, empirical studies on the functional structure of [...] Read more.
Organic agriculture is widely regarded as an important approach to reducing biodiversity loss and promoting sustainable agricultural development compared to conventional agriculture. Notably, organic farming practices have substantially boosted the diversity of soil microbial communities. However, empirical studies on the functional structure of soil microbial communities in organic agroecosystems and the mechanisms influencing them remain relatively scarce. Using high-throughput sequencing technology, we analyzed soil microbial communities associated with organic (orange lands) and conventional (coffee and maize lands) farming practices in the Gaoligong Mountains (GLGM) region, with the aim of revealing differences in soil properties, microbial community structure, and functional composition across different agricultural management practices. The results revealed that organic farming boosted soil organic carbon and fertility, driving changes in the microbial community composition. Organic farming notably increased the abundance of bacterial functional groups involved in the carbon and nitrogen cycles but decreased the abundance of symbiotic fungi. Furthermore, no significant differences were observed in the abundance of saprotrophic and pathogenic fungi between the organic and conventional farming systems. The present study demonstrates that organic farming enhances the functional roles of oil microorganisms in nutrient cycling and overall ecosystem processes by enhancing soil’s organic carbon content and soil fertility, thereby modifying the soil’s microbial community structure and functions. Overall, organic farming contributes to improvements in soil health and supports the sustainable development of agriculture in the GLGM region. Full article
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14 pages, 4338 KiB  
Article
Microbial Corrosion Behavior of L245 Pipeline Steel in the Presence of Iron-Oxidizing Bacteria and Shewanella algae
by Fanghui Zhu, Yiyang Liu, Chunsheng Wu, Kai Li, Yingshuai Hu, Wei Liu, Shuzhen Yu, Mingxing Li, Xiaohuan Dong and Haobo Yu
Microorganisms 2025, 13(7), 1476; https://doi.org/10.3390/microorganisms13071476 - 25 Jun 2025
Viewed by 348
Abstract
Microbiologically influenced corrosion (MIC) poses significant challenges in oilfield water injection environments, leading to substantial socioeconomic losses. L245 steel, a low-alloy steel widely used in oil and gas pipelines due to its excellent mechanical properties and cost-effectiveness, remains highly vulnerable to MIC during [...] Read more.
Microbiologically influenced corrosion (MIC) poses significant challenges in oilfield water injection environments, leading to substantial socioeconomic losses. L245 steel, a low-alloy steel widely used in oil and gas pipelines due to its excellent mechanical properties and cost-effectiveness, remains highly vulnerable to MIC during long-term service. This study uses surface characterization and electrochemical techniques to investigate the corrosion behavior of L245 pipeline steel under short-cycle conditions in a symbiotic environment of iron-oxidizing bacteria (IOB) and Shewanella algae (S. algae). Key findings revealed that localized corrosion of L245 steel was markedly exacerbated under coexisting IOB and S. algae conditions compared to monoculture systems. However, the uniform corrosion rate under symbiosis fell between the rates observed in the individual IOB and S. algae systems. Mechanistically, the enhanced corrosion under symbiotic conditions was attributed to the synergistic electron transfer interaction: IOB exploited electron carriers secreted by S. algae during extracellular electron transfer (EET), which amplified the microbial consortium’s capacity to harvest electrons from the steel substrate. These results emphasize the critical role of interspecies electron exchange in accelerating localized degradation of carbon steel under complex microbial consortia, with implications for developing targeted mitigation strategies in industrial pipelines exposed to similar microbiological environments. Full article
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13 pages, 4156 KiB  
Article
Plant Functional Traits and Soil Nutrients Drive Divergent Symbiotic Fungal Strategies in Three Urban Street Tree Species
by Yifan Xue, Yao Wang, Jiang Shi, Jingyao Wei, Qiong Wang and Wenchen Song
J. Fungi 2025, 11(6), 454; https://doi.org/10.3390/jof11060454 - 14 Jun 2025
Viewed by 555
Abstract
Understanding species-specific mechanisms governing symbiotic fungal responses to plant traits and soil factors is critical for optimizing urban tree “plant-soil-fungus” systems under pollution stress. To address this gap, we combined δ13C/δ15N isotope analysis and ITS sequencing for three common [...] Read more.
Understanding species-specific mechanisms governing symbiotic fungal responses to plant traits and soil factors is critical for optimizing urban tree “plant-soil-fungus” systems under pollution stress. To address this gap, we combined δ13C/δ15N isotope analysis and ITS sequencing for three common street trees in Beijing: Sophora japonica, Ginkgo biloba, and Populus tomentosa. In S. japonica, symbiotic fungal abundance was positively associated with leaf δ15N, indicating root exudate-mediated “plant-microbe” interactions during atmospheric NOx assimilation. G. biloba, with weak NOx assimilation, exhibited a negative correlation between fungal abundance and soil available N/P, suggesting mycorrhizal nutrient compensation under low fertility. P. tomentosa showed decreased fungal abundance with increasing soil N/P ratios and specific leaf area, reflecting carbon allocation trade-offs that limit mycorrhizal investment. These results demonstrate that symbiotic fungi respond to atmospheric and edaphic drivers in a tree species-dependent manner. Urban greening strategies should prioritize S. japonica for its NOx mitigation potential and optimize fertilization for G. biloba (nutrient-sensitive fungi) and P. tomentosa (nutrient balance sensitivity). Strategic mixed planting of P. tomentosa with S. japonica could synergistically enhance ecosystem services through complementary resource acquisition patterns. This study provides mechanism-based strategies for optimizing urban tree management under atmospheric pollution stress. Full article
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22 pages, 1107 KiB  
Review
Oxidative Stress, Gut Bacteria, and Microalgae: A Holistic Approach to Manage Inflammatory Bowel Diseases
by Shani Shoham, Noam Pintel and Dorit Avni
Antioxidants 2025, 14(6), 697; https://doi.org/10.3390/antiox14060697 - 9 Jun 2025
Viewed by 689
Abstract
Oxidative stress is a recognized contributor to the pathophysiology of inflammatory bowel disease (IBD), exacerbating chronic inflammation and tissue damage. While traditional IBD therapies primarily focus on immune modulation, alternative approaches that address oxidative stress and promote gut microbial health present new opportunities [...] Read more.
Oxidative stress is a recognized contributor to the pathophysiology of inflammatory bowel disease (IBD), exacerbating chronic inflammation and tissue damage. While traditional IBD therapies primarily focus on immune modulation, alternative approaches that address oxidative stress and promote gut microbial health present new opportunities for symptom relief and disease management. Microalgae, known for their potent antioxidant, anti-inflammatory, and prebiotic properties, show promise in alleviating oxidative damage and supporting beneficial gut bacteria. This review explores the multifaceted role of oxidative stress in IBD and highlights the therapeutic potential of microalgae-derived compounds. In addition, it examines the synergistic benefits of combining microalgal antioxidants with probiotics to promote gut homeostasis. Advances in delivery systems, including nanotechnology and symbiotic bacteria–microalgae interactions, are also discussed as emerging approaches for targeted treatment. The review concludes by identifying future research priorities focused on clinical translation and microalgae-based bioengineering innovations to enhance the efficacy and accessibility of therapeutics for IBD patients. Full article
(This article belongs to the Special Issue Oxidative Stress in Gut Microbiota)
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14 pages, 5556 KiB  
Communication
Biofabricating Three-Dimensional Bacterial Cellulose Composites Using Waste-Derived Scaffolds
by Jula Kniep, Manu Thundathil, Kurosch Rezwan and Ali Reza Nazmi
Appl. Sci. 2025, 15(12), 6396; https://doi.org/10.3390/app15126396 - 6 Jun 2025
Viewed by 451
Abstract
Microorganisms metabolising low-value carbon sources can produce a diverse range of bio-based and biodegradable materials compatible with circular economy principles. One such material is bacterial cellulose (BC), which can be obtained in high purity through the fermentation of sweetened tea by a Symbiotic [...] Read more.
Microorganisms metabolising low-value carbon sources can produce a diverse range of bio-based and biodegradable materials compatible with circular economy principles. One such material is bacterial cellulose (BC), which can be obtained in high purity through the fermentation of sweetened tea by a Symbiotic Culture of Bacteria and Yeast (SCOBY). In recent years, there has been a growing research interest in SCOBYs as a promising solution for sustainable material design. In this work, we have explored a novel method to grow SCOBYs vertically using a waste-based scaffold system. Waste sheep wool and cotton fabric were soaked in a SCOBY infusion to serve as scaffolds, carrying the infusion and facilitating vertical growth through capillary forces. Remarkably, vertical membrane growth up to 5 cm above the liquid–air interface (LAI) was observed after just one week. Membranes with different microstructures were found in sheep wool and cotton, randomly oriented between the scaffold fibre, resulting in a high surface area. This study demonstrated that vertical growth in scaffolds is possible, proving the concept of a new method of growing composite materials with potential high-value applications in biomedicine, energy storage, or filtration. Full article
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