Search Results (37)

Suberinic acids (SA) derived from birch outer bark are renewable feedstocks for bio-based polyols suitable for rigid polyurethane (PU) foams. Three SA fractions were prepared under different depolymerization conditions: acidification at pH 1 (SA1), pH 5 (SA2), and FeCl₃-assisted treatment (SA3), and their chemical composition was analysed by GC–MS, Py–GC/MS, and GPC–RID. Polyols derived from tall oil fatty acids (TOFA) or epoxidized TOFA with trimethylolpropane were used as the sole polyol components in foam formulations. The SA fractions differed in molecular weight distribution, affecting polyol processability. All foams exhibited similar limiting oxygen index (19–20) and cone calorimetry results, showing no statistically significant differences in flammability. This indicates that variations in depolymerization conditions, including polyphenolic content and removal of higher-molecular-weight fractions during FeCl₃ treatment, do not dominate fire performance under the studied conditions. SA3-based polyols showed the lowest viscosity and produced foams with optimal mechanical and thermal properties, while SA1 offered higher yield with comparable performance. These results demonstrate the feasibility of converting SA fractions into functional polyols for rigid PU foams and highlight the FeCl₃-treated SA3 fraction and SA1 as the most promising candidates for further development. Full article

Broccoli (Brassica oleracea L. var. italica) is prone to rapid yellowing when stored at ambient temperature after harvest due to membrane damage. Here, freshly harvested broccoli florets were stored in a static magnetic field (5 mT) at 20 °C. The current results demonstrated that a static magnetic field lowered postharvest yellowing (chlorophyll breakdown), water loss, and oxidative stress. An integrated transcriptome and metabolome analysis suggested that static magnetic field-mediated alleviation of postharvest yellowing and senescence of broccoli florets involved the following factors: (1) downregulating the expression of genes related to organ senescence; (2) delaying the breakdown of chlorophylls through preventing the upregulation of chlorophyll degradation-related genes and the increase in oxidative stress; (3) alleviating cellular energy imbalance by upregulated fatty acid oxidation (as indicated by decreased free fatty acids) to reduce water loss and oxidative stress and to maintain membrane integrity; (4) increasing the abundances of lysophospholipids and sphingolipids and preventing the decrease in phosphatidylcholine abundance to lower water loss and oxidative stress, inhibit ethylene production, delay chlorophyll degradation, and keep membrane integrity; (5) reducing water loss via increasing cutin, suberin, and wax biosynthesis and stomatal closure brought about by upregulated expression of phospholipase D genes; and (6) preventing the increase in malondialdehyde (MDA) content, electrolyte leakage, and weight loss rate. To conclude, this work provided some novel data elucidating the underlying mechanism by which a static magnetic field delayed postharvest yellowing and senescence of broccoli florets. A static magnetic field could retard postharvest deterioration of broccoli florets, thereby providing a clean and non-thermal method for their green preservation. Full article

Maintaining stable male sterility is fundamental for ensuring the genetic purity and productivity of two-line hybrid wheat. However, unexpected heat events during the fertility-sensitive period can induce fertility restoration in photo-thermo-sensitive male sterile (PTMS) lines, posing a major threat to hybrid seed production. In this study, we identified two BS-type PTMS lines, BS166 and BS192, that consistently maintained sterility under heat stress in a seed-production environment, indicating strong heat-tolerant sterility. To uncover the molecular basis underlying this stability, we compared four BS-type PTMS lines exhibiting contrasting heat responses through field assessments, controlled heat treatments, transcriptome sequencing, and weighted gene co-expression network analysis (WGCNA). A total of 19,105 differentially expressed genes were identified, with the bisque4 module showing a significant correlation with seed setting rate. KEGG enrichment analysis revealed that starch and sucrose metabolism, cutin, suberin, and wax biosynthesis, fatty acid biosynthesis, and plant hormone signal transduction pathways were highly associated with heat-tolerant sterility. Core genes within these pathways displayed transcriptional stability in BS166 and BS192 but were strongly induced in heat-sensitive lines. In situ hybridization and RT-qPCR further confirmed tapetum-specific expression of TaBGLU32 and TaLACS1. Based on these findings, we propose a regulatory model explaining how PTMS lines maintain sterility stability under heat stress. Full article

The lacquer tree (Toxicodendron vernicifluum) possesses significant economic value due to its capability to produce raw lacquer, lacquer wax, and lacquer oil. The fruit is the primary source of lacquer wax; the primary components of lacquer wax are fatty acids, yet the synthesis mechanisms of fatty acids and wax esters remain unclear. In this study, we employed RNA-seq to analyze differentially expressed genes (DEGs) across four developmental stages in the fruit of the lacquer tree. The results revealed that, compared to the T1 stage, there were 1736, 10,228, and 12,444 DEGs in the three developmental stages. Through KEGG enrichment analysis, DEGs associated with lacquer wax synthesis were found to be primarily enriched in fatty acid metabolism, degradation, and the biosynthesis of cutin, suberin, and wax esters pathways. Furthermore, analysis of DEGs expression patterns in fatty acid synthesis pathways revealed that ACC, KAS, KAR, FATB, and FAD were significantly differentially expressed. Additionally, LACS, WSD1, CER4, CER1, and MAH1 participated in wax biosynthesis. Moreover, one co-expression network among wax biosynthesis genes, hormone signal transduction genes, and transcription factors was established. These findings provide a theoretical foundation for identifying key genes involved in regulating fatty acid and lacquer wax synthesis in Toxicodendron vernicifluum. Full article

Background: Heterosis (hybrid vigor) is a fundamental phenomenon in plant breeding, but its molecular basis remains poorly understood in perennial crops such as tea (Camellia sinensis). This study aimed to elucidate the molecular mechanisms underlying heterosis in tea and its hybrids by performing integrated transcriptomic and metabolomic analyses of F₁ hybrids derived from two elite cultivars, Fuding Dabaicha (FD) and Baojing Huangjincha 1 (HJC). Methods: Comprehensive RNA sequencing and widely targeted metabolomic profiling were conducted on the parental lines and F₁ hybrids at the one-bud-one-leaf stage. Primary metabolites (including amino acids, nucleotides, saccharides, and fatty acids) were quantified, and gene expression profiles were obtained. Transcriptomic and metabolomic datasets were integrated using KEGG pathway enrichment and co-expression network analysis to identify coordinated molecular changes underlying heterosis. Results: Metabolomic profiling detected 977 primary metabolites, many of which displayed non-additive accumulation patterns. Notably, linoleic acid derivatives (9(S)-HODE, 13(S)-HODE) and nucleotides (guanosine, uridine) exhibited significant positive mid-parent heterosis. Transcriptomic analysis revealed extensive non-additive gene expression in F₁ hybrids, and upregulated genes were enriched in fatty acid metabolism, nucleotide biosynthesis, and stress signaling pathways. Integrated analysis demonstrated strong coordination between differential gene expression and metabolite accumulation, especially in linoleic acid metabolism, cutin/suberine biosynthesis, and pyrimidine metabolism. Positive correlations between elevated fatty acid levels and transcript abundance of lipid metabolism genes suggest that the transcriptional remodeling of lipid pathways contributes to heterosis. Conclusions: These findings provide novel insights into tea plant heterosis and identify potential molecular targets for breeding high-quality cultivars. Full article

Transcriptomic analysis of fruit flesh of the cultivars ‘Trinity’ (red-fleshed) and ‘Free Redstar’ (white-fleshed) uncovered a set of ten genes involved in different metabolic pathways. Three—N3Dioxy, LAR1 and F3Mo—were mapped via phenylpropanoid and flavonoid biosynthesis (mdm00940, mdm00941); four—AlcFARed, CER1, Cyp86A4 and PalmTransf—were mapped on the cutin, suberine and wax biosynthesis pathways (mdm00073); and three—TropRed, CyP865B1 and CytP450—were mapped via the tropane/piperidine/pyridine alkaloid biosynthesis pathway and the peroxisome pathway (KEGG:mdm00960, KEGG:mdm04146). Our study highlighted the higher activity of AlcFARed, CER1, PalmTransf and CYP86A4 in red-fleshed apple fruits and allowed us to discover a specific relationship between significant reductions in fruit wax coating and anthocyanin enrichment in fruit flesh. In addition, the uncovered inhibition of the TropRed gene and the activation of both Cyp865B1 and CYP86A4 suggests that both compounds generate primary alcohols and alkanes, ultimately bound to wax formation. Our results postulate that the fatty acid degradation process is initiated in the flesh of apple fruits and depends on the relationship between anthocyanin content and lipid and wax metabolism. These findings further our understanding of the molecular mechanism linking anthocyanin and wax, making it significantly important in the context of apple fruit storage stability. Full article

This article presents a review of several non-exclusive pathways for the sequestration of soil organic carbon, which can be classified into two large classical groups: the modification of plant and microbial macromolecules and the abiotic and microbial neoformation of humic substances. Classical studies have established a causal relationship between aromatic structures and the stability of soil humus (traditional hypotheses regarding lignin and aromatic microbial metabolites as primary precursors for soil organic matter). However, further evidence has emerged that underscores the significance of humification mechanisms based solely on aliphatics. The precursors may be carbohydrates, which may be transformed by the effects of fire or catalytic dehydration reactions in soil. Furthermore, humic-type structures may be formed through the condensation of unsaturated fatty acids or the alteration of aliphatic biomacromolecules, such as cutins, suberins, and non-hydrolysable plant polyesters. In addition to the intrinsic value of understanding the potential for carbon sequestration in diverse soil types, biogeochemical models of the carbon cycle necessitate the assessment of the total quantity, nature, provenance, and resilience of the sequestered organic matter. This emphasises the necessity of applying specific techniques to gain insights into their molecular structures. The application of appropriate analytical techniques to soil organic matter, including sequential chemolysis or thermal degradation combined with isotopic analysis and high-resolution mass spectrometry, derivative spectroscopy (visible and infrared), or ¹³C magnetic resonance after selective degradation, enables the simultaneous assessment of the concurrent biophysicochemical stabilisation mechanisms of C in soils. Full article

Suberin is a cell wall-associated biopolymer that possesses both poly(phenolic) and poly(aliphatic) elements assembled into chemically and spatially distinct domains. Domain-specific monomers are formed via a branched pathway between phenolic and aliphatic metabolisms. Previous transcript accumulation data (RNAseq) from early stages of wound-induced suberization revealed highly coordinated, temporal changes in the regulation of these two branches. Notably, phenolic metabolism-associated transcripts accumulated first, indicating a preference toward phenolic production early on post-wounding. To better understand the dynamics of suberin monomer biosynthesis and assembly, we assessed carbon allocation between phenolic and aliphatic metabolisms during wound-induced suberization. To do so, [¹³C₆]-glucose was administered to wound-healing potato tuber discs at different times post-wounding, and patterns of heavy carbon incorporation into (1) primary metabolites and (2) the suberin polymer were assessed. During early stages of wound-healing, carbon from glucose was rapidly incorporated into phenolic-destined metabolites, while at later stages it was shared between phenolic- and aliphatic-destined metabolites. Similarly, the pattern of labelled carbon incorporation into the poly(aliphatic) domain reflected a greater dedication of carbon towards 18:1 w-hydroxy fatty acid and 18:1 dioic acid (the two most abundant aliphatic monomers in potato suberin) later in the wound healing time course. Full article

The synergistic optimization of yield and abiotic/biotic resistance is of great significance in plant breeding. However, the genomic mechanisms underlying the selection for environmental adaptation and yield-related traits remain poorly understood. In this study, we identified a thaumatin-like protein (TLP), AtTLP1b, which was shown to pleiotropically regulate seed oil content and resistance to Sclerotinia sclerotiorum by gene knockout and overexpressing experiments in Arabidopsis. The oil composition oleic acid (C18:1), linoleic acid (C18:2), linolenic acid (C18:3) and eicosenoic acid (C20:1) were altered significantly in overexpressing and knockout lines. RNA-seq analysis revealed that overexpression of AtTLP1b significantly downregulated the expression levels of genes involved in wax, suberin synthesis, oxylipin metabolism and plant–pathogen interaction. Furthermore, more than half of the genes involved in the circadian rhythm–plant pathway were differentially expressed in the overexpressing lines. We propose that AtTLP1b primarily inhibits fatty acid synthesis and plant immune responses via the circadian rhythm–plant pathway. Our findings suggest that AtTLP1b plays a vital role in simultaneous improvement of seed oil content and resistance to S. sclerotiorum and provides a valuable resource for molecular breeding. Full article

Rapeseed (Brassica napus L.) is one of the four major oilseed crops in the world and is rich in fatty acids. Changes in the fatty acid composition affect the quality of rapeseed. Fatty acids play various roles in plants, but the functions of the genes involved in the fatty acid composition during plant development remain unclear. β-Ketoacyl-CoA synthase (KCS) is a key enzyme involved in the elongation of fatty acids. Various types of fatty acid products are used to build lipid molecules, such as oils, suberin, wax, and membrane lipids. In B. napus, BnaKCSA8 and BnaKCSC3 belong to the KCS family, but their specific functions remain unclear. This study cloned BnaKCSA8 and BnaKCSC3 from Brassica napus L. and analyzed their functions. The gene structures of BnaKCSA8 and BnaKCSC3 were similar and they were localized to the endoplasmic reticulum (ER). In yeast, overexpression of BnaKCSA8 increased the ratios of palmitoleic acid and oleic acid, while BnaKCSC3 decreased the ratios of oleic acid. In Arabidopsis, overexpression of BnaKCSA8 and BnaKCSC3 lead to an increase in the proportion of linoleic acid and a decrease in the erucic acid. In summary, BnaKCSA8 and BnaKCSC3 altered the composition ratios of fatty acids. These findings lay the foundation for an understanding of the role of KCS in the fatty acids in rapeseed, potentially improving its health and nutritional qualities. Full article

Rotavirus (RV) is a significant contributor to diarrhea in both young children and animals, especially in piglets, resulting in considerable economic impacts on the global pig industry. Isoleucine (Ile), a branched-chain amino acid, is crucial for regulating nutrient metabolism and has been found to help mitigate diarrhea. This study aimed to assess the impact of isoleucine supplementation in feed on colonic barrier function, colonic microbiota, and metabolism in RV-infected weanling piglets. A total of thirty-two weaned piglets, aged 21 days, were randomly assigned to two dietary groups (each further divided into two subgroups, with eight replicates in each subgroup), receiving diets with either 0% or 1% isoleucine for a duration of 14 days. One group from each treatment was then challenged with RV, and the experimental period lasted for 19 days. The results showed that dietary Ile significantly increased the secretion of IL-4, IL-10, and sIgA in the colon of RV-infected weanling piglets (p < 0.05). In addition, Ile supplementation notably increased the expression of tight junction proteins, including Claudin-3, Occludin, and ZO-1 (p < 0.01), as well as the mucin protein MUC-1 in the colon of RV-infected weanling piglets (p < 0.05). Gut microbiota analysis revealed that dietary Ile increased the relative abundance of Prevotella and decreased the relative abundance of Rikenellaceae in the colons of RV-infected weanling piglets. Compared with the RV+CON, metabolic pathways in the RV+ILE group were significantly enriched in vitamin digestion and absorption, steroid biosynthesis, purine metabolism, pantothenate and CoA biosynthesis, cutin, suberine, and wax biosynthesis, as well as fatty acid biosynthesis, and unsaturated fatty acid biosynthesis. In conclusion, dietary Ile supplementation can improve immunity, colonic barrier function, colonic microbiota, and colonic metabolism of RV-infected weaned piglets. These findings provide valuable insights into the role of isoleucine in the prevention and control of RV. Full article

Aroma plays a pivotal role in defining tea quality and distinctiveness, and tea producers have often observed that specific drought conditions are closely associated with the formation and accumulation of characteristic aroma compounds in tea leaves. However, there is still limited understanding of the differential strategies employed by various tea cultivars in response to drought stress for the accumulation of key volatile aroma compounds in fresh tea leaves, as well as the associated metabolic pathways involved in aroma formation. In this study, two widely cultivated tea cultivars in China, Fuding Dabai (FD) and Wuniuzao (WNZ), were examined to assess the impact of mild field drought stress on the composition and accumulation of key volatile aroma compounds in fresh leaves using headspace gas chromatography–ion mobility spectrometry (HS-GC-IMS) and headspace solid phase micro-extraction gas chromatography–mass spectrometry (HS-SPME-GC-MS) technologies. Results revealed that drought stress led to a substantial increase in the diversity of volatile compounds (VOCs) in FD, while WNZ exhibited a notable rise in low-threshold VOC concentrations, amplifying sweet, floral, fruity, and earthy aroma profiles in post-drought fresh leaves. Through partial least squares discriminant analysis (PLS-DA) of HS-GC-IMS and HS-SPME-GC-MS data, integrating variable importance projection (VIP) scores and odor activity values (OAVs) above 1, 9, and 13, key odor-active compounds were identified as potential markers distinguishing the drought responses in the two cultivars. These compounds serve as crucial indicators of the aromatic profile shifts induced by drought, providing insights into the differential metabolic strategies of the cultivars. Additionally, KEGG enrichment analysis revealed 12 metabolic pathways, such as terpenoid biosynthesis, fatty acid synthesis, cutin, suberine, and wax biosynthesis, and phenylalanine metabolism, which may play crucial roles in the formation and accumulation of VOCs in tea leaves under drought stress. These findings provide a comprehensive framework for understanding the cultivar-specific mechanisms of aroma formation and accumulation in tea leaves under mild drought conditions. Full article

Sweet potato (Ipomoea batatas L.) is one of the most important global food crops. This crop exhibits excellent allelopathic potential against various weeds, but its allelopathic mechanism at the molecular level is unclear. Therefore, metabolomic and transcriptomic analyses were performed to explore the allelopathic effects, metabolic pathway, and associated genes for two major compounds with allelopathic activity, palmitic acid and linoleic acid. The sweet potato variety Ningshu 25 was employed in the current study. The results showed that palmitic acid and linoleic acid had strong allelopathic effects on seed germination, plant growth, antioxidant enzyme activity, and chlorophyll content of two weeds Digitaria sanguinalis and Bidens pilosa. The content of the two targeted metabolites was affected by different environmental conditions and was significantly increased under low temperature (15 °C). Five metabolic pathways involved in the two targeted metabolites of fatty acids were found: fatty acid biosynthesis, fatty acid elongation, fatty acid degradation, biosynthesis of cutin, suberine, and wax, and the linoleic acid metabolism pathway. The synthesis of palmitic acid is significantly enriched in the biosynthesis pathways of fatty acids, cutin, suberine, and wax, and the synthesis of linoleic acid is significantly enriched in the linoleic acid metabolism pathway. Under different environmental conditions, there were three key genes expressed—g4988, g11881, and g19673—located in the biosynthesis pathways of cutin, suberine, and wax; four key genes expressed—g31191, g60956, g49811, and g59542—located in the biosynthesis pathway of fatty acids; and six key expressed genes—g26575, g24787, g23517, g57649, g58562, and g4314—located in biosynthesis pathway of linoleic acid, respectively. Our study advances understanding of the molecular mechanisms behind allelopathic traits in sweet potato and provides a set of candidate genes for use in improving allelopathic potential in sweet potato germplasm resources. Full article

Chinese cordyceps (GL) is a traditional medicinal fungus, with Ophiocordyceps sinensis (O. sinensis, BL) and Paecilomyces hepiali (P. hepiali, JSB) being fungi isolated from wild Chinese cordyceps. These three species share similar chemical composition and pharmacological effects. Existing studies have primarily compared the metabolites of Chinese cordyceps and O. sinensis, overlooking the assessment of antioxidant capacity in Chinese cordyceps, P. hepiali, and O. sinensis. In this study, LC-MS/MS was employed to analyze metabolites in GL, JSB, and BL. Utilizing principal component analysis (PCA), supervised orthogonal partial least squares discriminant analysis (OPLS-DA), and hierarchical cluster analysis (HCA), it was observed that the majority of differential metabolites (DMs) primarily accumulated in organic acids and derivatives, lipids and lipid-like molecules, and organoheterocyclic compounds. Antioxidant activity analysis indicated that GL exhibited the higher 2,2-diphenyl-1-picrylhydrazyl radical scavenging ability (DPPH•, scavenging rate is 81.87 ± 0.97%), hydroxyl free radical scavenging capacity (•OH, scavenging rate is 98.10 ± 0.60%), and superoxide anion radical scavenging capacity (O₂^•−, scavenging rate is 69.74 ± 4.36%), while JSB demonstrated the higher FRAP total antioxidant capacity of 8.26 μmol Trolox/g (p < 0.05). Correlation analysis revealed a positive correlation between DMs (fatty acyls and amino acids) and DPPH•, FRAP, •OH, and O₂^•− (p < 0.05). Additionally, glycerophospholipid DMs were found to be positively correlated with FRAP (p < 0.05). Through KEGG pathway analysis, it was determined that the accumulation of DMs in pathways such as cutin, suberine and wax biosynthesis has a higher impact on influencing the antioxidant activity of the samples. These results shed light on the antioxidant capacity and metabolic characteristics of Chinese cordyceps and its substitutes and offer valuable insights into how different DMs impact the strength of antioxidant activity, aiding in the advancement and application of Chinese cordyceps and its substitutes. Full article

Drought stress is a major meteorological threat to crop growth and yield. Barley (Hordeum vulgare L.) is a vital cereal crop with strong drought tolerance worldwide. However, the underlying growth properties and metabolomic regulatory module of drought tolerance remains less known. Here, we investigated the plant height, spike length, effective tiller, biomass, average spikelets, 1000-grain weight, number of seeds per plant, grain weight per plant, ash content, protein content, starch content, cellulose content, and metabolomic regulation mechanisms of drought stress in barley. Our results revealed that the growth properties were different between ZDM5430 and IL-12 under drought stress at different growth stages. We found that a total of 12,235 metabolites were identified in two barley genotype root samples with drought treatment. More than 50% of these metabolites showed significant differences between the ZDM5430 and IL-12 roots. The Kyoto Encyclopedia of Genes and Genomes pathway analysis identified 368 differential metabolites mainly involved in starch and sucrose metabolism, the pentose phosphate pathway, pyrimidine metabolism, phenylalanine, tyrosine, and tryptophan biosynthesis in ZDM5430 under drought stress, whereas the different metabolites of IL-12 under drought stress related to starch and sucrose metabolism, the pentose phosphate pathway, 2-oxocarboxylic acid metabolism, cutin, suberine and wax biosynthesis, carbon metabolism, fatty acid biosynthesis, and C5-branched dibasic acid metabolism. These metabolites have application in the tricarboxylic cycle, the urea cycle, the met salvage pathway, amino acid metabolism, unsaturated fatty acid biosynthesis, phenolic metabolism, and glycolysis. On the other hand, the expression patterns of 13 genes related to the abovementioned bioprocesses in different barley genotypes roots were proposed. These findings afford an overview for the understanding of barley roots’ metabolic changes in the drought defense mechanism by revealing the differently accumulated compounds. Full article