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18 pages, 903 KiB  
Article
Effect of Allyl-Isothiocyanate Release from Black Mustard (Brassica nigra) Seeds During Refrigerated Storage to Preserve Fresh Tench (Tinca tinca) Fillets
by María José Rodríguez Gómez, María Alejo Martínez, Raquel Manzano Durán, Daniel Martín-Vertedor and Patricia Calvo Magro
Fishes 2025, 10(8), 381; https://doi.org/10.3390/fishes10080381 - 5 Aug 2025
Abstract
The aim of this study was to prevent the development of microorganisms in the refrigerated storage of tench by releasing allyl isothiocyanate (AITC) produced by black mustard seeds. Tench reared in an aquaculture centre were sacrificed and the fillets were separated. Different amounts [...] Read more.
The aim of this study was to prevent the development of microorganisms in the refrigerated storage of tench by releasing allyl isothiocyanate (AITC) produced by black mustard seeds. Tench reared in an aquaculture centre were sacrificed and the fillets were separated. Different amounts of defatted mustard seed (300, 400 and 500 mg) were added to hermetic polypropylene trays. Microbiological, sensory, and gas chromatography with MS detection analysis were done. AITC release increased progressively until the third day of storage, significantly delaying the development of microorganisms in samples with higher mustard seed content. The tasting panel detected positive aromas at the beginning of the study, but these decreased and negative aromas appeared. The mustard seed treatment resulted in a higher positive aroma at the end of the storage, reducing rotting and ammonia odours. A total of 31 volatile compounds were detected and grouped into hydrocarbon, alcohol, benzenoid, isothiocyanate, ketone, acetate, aldehyde, and others. Butylated hydroxytoluene, an indicator of bacterial contamination, was the major aromatic compound found during storage. The release of AITC resulted in fewer organic compounds with negative aromas appearing during storage. PCA analysis allowed us to classify the assays during storage according to their volatile profiles, confirming the differences observed between treatments. Thus, adding mustard seed to fish packaging could be a viable alternative to extending the product’s shelf life and ensuring food safety. Full article
(This article belongs to the Section Processing and Comprehensive Utilization of Fishery Products)
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27 pages, 884 KiB  
Review
Harnessing Seed Endophytic Microbiomes: A Hidden Treasure for Enhancing Sustainable Agriculture
by Ayomide Emmanuel Fadiji, Adedayo Ayodeji Lanrewaju, Iyabo Olunike Omomowo, Fannie Isela Parra-Cota and Sergio de los Santos-Villalobos
Plants 2025, 14(15), 2421; https://doi.org/10.3390/plants14152421 - 4 Aug 2025
Abstract
Microbes perform diverse and vital functions in animals, plants, and humans, and among them, plant-associated microbiomes, especially endophytes, have attracted growing scientific interest in recent years. Numerous plant species thriving in diverse environments have been shown to host endophytic microbes. While endophytic bacteria [...] Read more.
Microbes perform diverse and vital functions in animals, plants, and humans, and among them, plant-associated microbiomes, especially endophytes, have attracted growing scientific interest in recent years. Numerous plant species thriving in diverse environments have been shown to host endophytic microbes. While endophytic bacteria commonly colonize plant tissues such as stems, roots, and leaves, seed-associated endophytes generally exhibit lower diversity compared to those in other plant compartments. Nevertheless, seed-borne microbes are of particular importance, as they represent the initial microbial inoculum that influences a plant’s critical early developmental stages. The seed endophytic microbiome is of particular interest due to its potential for vertical transmission and its capacity to produce a broad array of phytohormones, enzymes, antimicrobial compounds, and other secondary metabolites. Collectively, these functions contribute to enhanced plant biomass and yield, especially under abiotic and biotic stress conditions. Despite their multifaceted roles, seed microbiomes remain underexplored in plant ecology, and their potential benefits are not yet fully understood. This review highlights recent advances in our understanding of the diversity, community composition, mechanisms of action, and agricultural significance of seed endophytic microbes. Furthermore, it synthesizes current insights into how seed endophytes promote plant health and productivity and proposes future research directions to fully harness their potential in sustainable agriculture. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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17 pages, 826 KiB  
Review
Mechanisms and Impact of Acacia mearnsii Invasion
by Hisashi Kato-Noguchi and Midori Kato
Diversity 2025, 17(8), 553; https://doi.org/10.3390/d17080553 - 4 Aug 2025
Abstract
Acacia mearnsii De Wild. has been introduced to over 150 countries for its economic value. However, it easily escapes from plantations and establishes monospecific stands across plains, hills, valleys, and riparian habitats, including protected areas such as national parks and forest reserves. Due [...] Read more.
Acacia mearnsii De Wild. has been introduced to over 150 countries for its economic value. However, it easily escapes from plantations and establishes monospecific stands across plains, hills, valleys, and riparian habitats, including protected areas such as national parks and forest reserves. Due to its negative ecological impact, A. mearnsii has been listed among the world’s 100 worst invasive alien species. This species exhibits rapid stem growth in its sapling stage and reaches reproductive maturity early. It produces a large quantity of long-lived seeds, establishing a substantial seed bank. A. mearnsii can grow in different environmental conditions and tolerates various adverse conditions, such as low temperatures and drought. Its invasive populations are unlikely to be seriously damaged by herbivores and pathogens. Additionally, A. mearnsii exhibits allelopathic activity, though its ecological significance remains unclear. These characteristics of A. mearnsii may contribute to its expansion in introduced ranges. The presence of A. mearnsii affects abiotic processes in ecosystems by reducing water availability, increasing the risk of soil erosion and flooding, altering soil chemical composition, and obstructing solar light irradiation. The invasion negatively affects biotic processes as well, reducing the diversity and abundance of native plants and arthropods, including protective species. Eradicating invasive populations of A. mearnsii requires an integrated, long-term management approach based on an understanding of its invasive mechanisms. Early detection of invasive populations and the promotion of public awareness about their impact are also important. More attention must be given to its invasive traits because it easily escapes from cultivation. Full article
(This article belongs to the Special Issue Plant Adaptation and Survival Under Global Environmental Change)
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22 pages, 3270 KiB  
Article
Deep Point Cloud Facet Segmentation and Applications in Downsampling and Crop Organ Extraction
by Yixuan Wang, Chuang Huang and Dawei Li
Appl. Sci. 2025, 15(15), 8638; https://doi.org/10.3390/app15158638 (registering DOI) - 4 Aug 2025
Abstract
To address the issues in existing 3D point cloud facet generation networks, specifically, the tendency to produce a large number of empty facets and the uncertainty in facet count, this paper proposes a novel deep learning framework for robust facet segmentation. Based on [...] Read more.
To address the issues in existing 3D point cloud facet generation networks, specifically, the tendency to produce a large number of empty facets and the uncertainty in facet count, this paper proposes a novel deep learning framework for robust facet segmentation. Based on the generated facet set, two exploratory applications are further developed. First, to overcome the bottleneck where inaccurate empty-facet detection impairs the downsampling performance, a facet-abstracted downsampling method is introduced. By using a learned facet classifier to filter out and discard empty facets, retaining only non-empty surface facets, and fusing point coordinates and local features within each facet, the method achieves significant compression of point cloud data while preserving essential geometric information. Second, to solve the insufficient precision in organ segmentation within crop point clouds, a facet growth-based segmentation algorithm is designed. The network first predicts the edge scores for the facets to determine the seed facets. The facets are then iteratively expanded according to adjacent-facet similarity until a complete organ region is enclosed, thereby enhancing the accuracy of segmentation across semantic boundaries. Finally, the proposed facet segmentation network is trained and validated using a synthetic dataset. Experiments show that, compared with traditional methods, the proposed approach significantly outperforms both downsampling accuracy and instance segmentation performance. In various crop scenarios, it demonstrates excellent geometric fidelity and semantic consistency, as well as strong generalization ability and practical application potential, providing new ideas for in-depth applications of facet-level features in 3D point cloud analysis. Full article
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16 pages, 1991 KiB  
Article
Antihypertensive Effects of Lotus Seed (Nelumbo nucifera Gaertn.) Extract via eNOS Upregulation and Oxidative Stress Reduction in L-NAME-Induced Hypertensive Rats
by Anjaree Inchan, Tippaporn Bualeong, Worasak Kaewkong, Nitra Nuengchamnong, Phapada Apaikawee, Pakaporn Sa-Nguanpong, Wiriyaporn Sumsakul, Natthawut Charoenphon, Usana Chatturong, Watcharakorn Deetud and Krongkarn Chootip
Pharmaceuticals 2025, 18(8), 1156; https://doi.org/10.3390/ph18081156 - 4 Aug 2025
Abstract
Background/Objectives: Nelumbo nucifera Gaertn. (lotus) seeds have traditionally been used to treat hypertension, though their mechanisms remain unclear. This study investigated the antihypertensive effects of lotus seed extract (LSE) and its mechanisms in rats with Nω-nitro-L-arginine methyl ester (L-NAME)-induced hypertension. [...] Read more.
Background/Objectives: Nelumbo nucifera Gaertn. (lotus) seeds have traditionally been used to treat hypertension, though their mechanisms remain unclear. This study investigated the antihypertensive effects of lotus seed extract (LSE) and its mechanisms in rats with Nω-nitro-L-arginine methyl ester (L-NAME)-induced hypertension. Methods: Male Sprague Dawley rats received L-NAME (40 mg/kg/day) in drinking water and were treated orally with LSE (5, 10, or 100 mg/kg/day), captopril (5 mg/kg/day), or a combination of LSE and captopril (2.5 mg/kg/day each) for 5 weeks. Hemodynamic parameters and histological changes in the left ventricle and aorta were assessed. Mechanistic studies included measurements of plasma nitric oxide (NO) metabolites, malondialdehyde (MDA), superoxide dismutase (SOD) activity, angiotensin II (Ang II), angiotensin-converting enzyme (ACE) activity, and protein expression via western blot. Results: L-NAME elevated systolic blood pressure and induced cardiovascular remodeling, oxidative stress, and renin-angiotensin system activation. LSE treatment reduced blood pressure, improved antioxidant status, increased NO bioavailability, and downregulated gp91phox and AT1R expression. The combination of low-dose LSE and captopril produced stronger effects than LSE alone, with efficacy comparable to captopril. Conclusions: These findings suggest that LSE exerts antihypertensive effects via antioxidant activity and inhibition of the renin-angiotensin system, supporting its potential as an adjunct therapy for hypertension. Full article
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15 pages, 642 KiB  
Article
Evaluation of the Profile of Selected Bioactive Compounds and the Potential of Barley Wort Enriched with Malted and Unmalted Hemp Seeds for Brewing Applications
by Marek Zdaniewicz, Robert Duliński, Jana Lakatošová, Janusz Gołaszewski and Krystyna Żuk-Gołaszewska
Molecules 2025, 30(15), 3261; https://doi.org/10.3390/molecules30153261 - 4 Aug 2025
Abstract
The incorporation of Cannabis sativa L. seeds into barley wort was investigated to enhance the functional profile of beer. Hemp seeds (cv. Henola) were malted via controlled steeping, germination, and kilning, then added to barley malt at 10% and 30% (w/ [...] Read more.
The incorporation of Cannabis sativa L. seeds into barley wort was investigated to enhance the functional profile of beer. Hemp seeds (cv. Henola) were malted via controlled steeping, germination, and kilning, then added to barley malt at 10% and 30% (w/w) in both malted and unmalted forms. Standard congress mashing produced worts whose physicochemical parameters (pH, extract, colour, turbidity, filtration and saccharification times) were assessed, alongside profiles of fermentable sugars, polyphenols, B-group vitamins, and cannabinoids. Addition of hemp seeds reduced extract yield without impairing saccharification or filtration and slightly elevated mash pH and turbidity. Maltose and glucose levels declined significantly at higher hemp dosages, whereas sucrose remained stable. Wort enriched with 30% unmalted seeds exhibited the highest levels of trans-ferulic (20.61 µg/g), gallic (5.66 µg/g), trans-p-coumaric (3.68 µg/g), quercetin (6.07 µg/g), and trans-cinnamic (4.07 µg/g) acids. Malted hemp addition enhanced thiamine (up to 0.302 mg/mL) and riboflavin (up to 178.8 µg/mL) concentrations. Cannabinoids (THCA-A, THCV, CBDV, CBG, CBN) were successfully extracted at µg/mL levels, with the total cannabinoid content peaking at 14.59 µg/mL in the 30% malted treatment. These findings demonstrate that hemp seeds, particularly in malted form, can enrich barley wort with bioactive polyphenols, vitamins, and non-psychoactive cannabinoids under standard mashing conditions, without compromising key brewing performance metrics. Further work on fermentation, sensory evaluation, stability, and bioavailability is warranted to realise hemp-enriched functional beers. Full article
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15 pages, 4969 KiB  
Article
Duplicated Genes on Homologous Chromosomes Decipher the Dominant Epistasis of the Fiberless Mutant in Cotton
by Yu Le, Xingchen Xiong, Zhiyong Xu, Meilin Chen, Yuanxue Li, Chao Fu, Chunyuan You and Zhongxu Lin
Biology 2025, 14(8), 983; https://doi.org/10.3390/biology14080983 (registering DOI) - 2 Aug 2025
Viewed by 100
Abstract
Cotton fiber initiation determines the fiber yield, yet the genetic basis underlying lint and fuzz initiation has still not been fully uncovered. Here, map-based cloning was carried out to identify the fiberless mutant genes derived from a cross between Gossypium hirsutum acc. WT [...] Read more.
Cotton fiber initiation determines the fiber yield, yet the genetic basis underlying lint and fuzz initiation has still not been fully uncovered. Here, map-based cloning was carried out to identify the fiberless mutant genes derived from a cross between Gossypium hirsutum acc. WT and a natural fiberless mutant, fblSHZ. The 12:3:1 segregation ratio in F2 populations (including 1848 and 3100 individuals that were developed in 2016 and 2018, respectively) revealed dominant epistasis, with the fuzz gene exerting dominance over the lint gene. Genetic linkage analysis revealed that GhMYB25like_A12 controls fuzz fiber initiation, while both GhMYB25like_A12 and GhMYB25like_D12 regulate lint fiber development. Sequencing analyses showed that the fblSHZ mutant exhibited a K104M mutation in the R2R3 domain of GhMYB25like_A12 and a transposable element insertion in GhMYB25like_D12, leading to fiberless seeds. Knockout of GhMYB25like_A12 produced fuzzless seeds, knockout of GhMYB25like_D12 led to no obvious change in seeds, and knockout of both (GhMYB25like_A12&D12) resulted in fiberless seeds. The 12:3:1 ratio reappeared in the F2 population developed from the GhMYB25like_A12&D12 mutated plants as female and Jin668 as the male, which further confirmed the genetic interaction observed in fblSHZ. RNA-seq analysis revealed that GhMYB25like regulates cotton fiber initiation through multiple pathways, especially fatty acid metabolism. This study elucidates the key genes and their genetic interaction mechanisms governing cotton fiber initiation, providing a theoretical foundation for genetic improvement of cotton fiber traits. Full article
(This article belongs to the Special Issue Cotton: Genomics, Biotechnology and Molecular Breeding)
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16 pages, 3713 KiB  
Article
Synergistic Alleviation of Saline–Alkali Stress and Enhancement of Selenium Nutrition in Rice by ACC (1-Aminocyclopropane-1-Carboxylate) Deaminase-Producing Serratia liquefaciens and Biogenically Synthesized Nano-Selenium
by Nina Zhu, Xinpei Wei, Xingye Pan, Benkang Xie, Shuquan Xin and Kai Song
Plants 2025, 14(15), 2376; https://doi.org/10.3390/plants14152376 - 1 Aug 2025
Viewed by 161
Abstract
Soil salinization and selenium (Se) deficiency threaten global food security. This study developed a composite bioinoculant combining ACC deaminase-producing Serratia liquefaciens and biogenically synthesized nano-selenium (SeNPs) to alleviate saline–alkali stress and enhance Se nutrition in rice (Oryza sativa L.). A strain of [...] Read more.
Soil salinization and selenium (Se) deficiency threaten global food security. This study developed a composite bioinoculant combining ACC deaminase-producing Serratia liquefaciens and biogenically synthesized nano-selenium (SeNPs) to alleviate saline–alkali stress and enhance Se nutrition in rice (Oryza sativa L.). A strain of S. liquefaciens with high ACC deaminase activity was isolated and used to biosynthesize SeNPs with stable physicochemical properties. Pot experiments showed that application of the composite inoculant (S3: S. liquefaciens + 40 mmol/L SeNPs) significantly improved seedling biomass (fresh weight +53.8%, dry weight +60.6%), plant height (+31.6%), and root activity under saline–alkali conditions. S3 treatment also enhanced panicle weight, seed-setting rate, and grain Se content (234.13 μg/kg), meeting national Se-enriched rice standards. Moreover, it increased rhizosphere soil N, P, and K availability and improved microbial α-diversity. This is the first comprehensive demonstration that a synergistic bioformulation of ACC deaminase PGPR and biogenic SeNPs effectively mitigates saline–alkali stress, enhances soil fertility, and enables safe Se biofortification in rice. Full article
(This article belongs to the Special Issue Nanomaterials in Plant Growth and Stress Adaptation—2nd Edition)
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21 pages, 4076 KiB  
Article
Tissue Paper-Based Hydrogels for Soil Water Maintenance and Nitrogen Release
by Ana Carla Kuneski, Hima Haridevan, Elena Ninkovic, Ena McLeary, Darren Martin and Gunnar Kirchhof
Gels 2025, 11(8), 599; https://doi.org/10.3390/gels11080599 - 1 Aug 2025
Viewed by 178
Abstract
Hydrogels are widely known for their ability to increase soil water retention and for their potential slow nutrient release mechanism. They have been constantly improved to meet the growing demand for sustainability in agriculture. Research focused on the development of biodegradable hydrogels, produced [...] Read more.
Hydrogels are widely known for their ability to increase soil water retention and for their potential slow nutrient release mechanism. They have been constantly improved to meet the growing demand for sustainability in agriculture. Research focused on the development of biodegradable hydrogels, produced from industrial cellulose waste, are an ecological and efficient alternative soil ameliorant for the improvement of agricultural land. The objective of this study was to evaluate the impacts of two types of hydrogel (processed in a glass reactor versus a twin-screw extruder) on soils with different textures (clay and sandy loam), testing their water retention capacity, nitrogen leaching, and effects on seed germination. The methodology included the evaluation of water retention capacity at different pressures with different hydrogel addition rates in the soil, leaching tests in columns filled with soil and hydrogel layers, and germination tests of sorghum and corn. The results indicated that the addition of hydrogel significantly improved water retention, especially in sandy loam soils. The hydrogels also reduced nitrogen leaching, acting as nitrification inhibitors and limiting the conversion of ammonium to nitrate, with greater effectiveness in clayey soils. In the tested formulations, it was observed that the hydrogel doses applied to the columns favored nitrogen retention in the region close to the roots, directly influencing the initial stages of germination. This behavior highlights the potential of hydrogels as tools for directing nutrients in the soil profile, indicating that adjustments to the C:N ratio, nutrient release rate, and applied doses can optimize their application for different crops. Full article
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19 pages, 3489 KiB  
Article
Impact of Nitrogen Fertilisation and Inoculation on Soybean Nodulation, Nitrogen Status, and Yield in a Central European Climate
by Waldemar Helios, Magdalena Serafin-Andrzejewska, Marcin Kozak and Sylwia Lewandowska
Agriculture 2025, 15(15), 1654; https://doi.org/10.3390/agriculture15151654 - 1 Aug 2025
Viewed by 193
Abstract
Soybean (Glycine max [L.] Merr.) cultivation is expanding in Central Europe due to the development of early-maturing cultivars and growing demand for plant-based protein produced without the use of genetically modified organisms. However, nitrogen (N) management remains a major challenge in temperate [...] Read more.
Soybean (Glycine max [L.] Merr.) cultivation is expanding in Central Europe due to the development of early-maturing cultivars and growing demand for plant-based protein produced without the use of genetically modified organisms. However, nitrogen (N) management remains a major challenge in temperate climates, where variable weather conditions can significantly affect nodulation and yield. This study evaluated the effects of three nitrogen fertilisation doses (0, 30, and 60 kg N·ha−1), applied in the form of ammonium nitrate (34% N) and two commercial rhizobial inoculants—HiStick Soy (containing Bradyrhizobium japonicum strain 532C) and Nitragina (including a Polish strain of B. japonicum)—on nodulation, nitrogen uptake, and seed yield. A three-year field experiment (2017–2019) was conducted in southwestern Poland using a two-factor randomized complete block design. Nodulation varied significantly across years, with the highest values recorded under favourable early-season moisture and reduced during drought. In the first year, inoculation with HiStick Soy significantly increased nodule number and seed yield compared to Nitragina and the uninoculated control. Nitrogen fertilisation consistently improved seed yield, although it had no significant effect on nodulation. The highest nitrogen use efficiency was observed with moderate nitrogen input (30 kg N·ha−1) combined with inoculation. These findings highlight the importance of integrating effective rhizobial inoculants with optimized nitrogen fertilisation to improve soybean productivity and nitrogen efficiency under variable temperate climate conditions. Full article
(This article belongs to the Special Issue Strategies to Enhance Nutrient Use Efficiency and Crop Nutrition)
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15 pages, 857 KiB  
Article
A Pilot Study on the Use of Pumpkin Waste as Cattle Feed
by Minori Nizuka, Hironobu Ishihara, Jun Nakahigashi, Daisaku Matsumoto and Eiji Kobayashi
Metabolites 2025, 15(8), 511; https://doi.org/10.3390/metabo15080511 - 31 Jul 2025
Viewed by 268
Abstract
Background/Objectives: Pumpkin seed pulp from processing plants offers high nutritional value due to its rich β-carotene content, making it a potential functional feed ingredient. This study investigated the effects of pumpkin seed pulp, which has already been administered as livestock feed, on [...] Read more.
Background/Objectives: Pumpkin seed pulp from processing plants offers high nutritional value due to its rich β-carotene content, making it a potential functional feed ingredient. This study investigated the effects of pumpkin seed pulp, which has already been administered as livestock feed, on key physiological parameters in cattle, including the concentration of β-carotene in the blood measured during routine health monitoring. Methods: Here, pumpkin waste cultivated in various fields was processed into cattle feed (pumpkin seed pulp flakes, PSPFs) by grinding and drying, and residual pesticide (heptachlor) and β-carotene contents were measured. A pilot feeding trial was conducted with 13 cattle (7 in the treatment group and 6 in the control group) and blood component analysis was performed, and findings were contextualized with a literature review. Results: Heptachlor concentrations varied depending on the cultivation site of raw pumpkins. Among the six lots produced using raw materials sourced from fields not contracted by the Air Water Group—a collective of companies in which Air Water Inc. holds more than 51% ownership—three exceeded the regulatory limits for animal feed established in Japan. PSPFs contained high levels of β-carotene, as expected. Blood tests before and after the feeding trial indicated absorption of β-carotene in the cattle. Maintaining high plasma β-carotene concentrations in cattle has been associated with improved immune function and reproductive performance. Conclusions: Our study demonstrates that PSPFs are a promising, environmentally friendly, and natural β-carotene-rich feed ingredient. Tracing the cultivation fields of raw pumpkins can help ensure feed safety. Full article
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14 pages, 3668 KiB  
Article
Infrasound-Altered Pollination in a Common Western North American Plant: Evidence from Wind Turbines and Railways
by Lusha M. Tronstad, Madison Mazur, Lauren Thelen-Wade, Delina Dority, Alexis Lester, Michelle Weschler and Michael E. Dillon
Environments 2025, 12(8), 266; https://doi.org/10.3390/environments12080266 - 31 Jul 2025
Viewed by 264
Abstract
Anthropogenic noise can have diverse effects on natural ecosystems, but less is known about the degree to which noise can alter organisms in comparison to other disturbances. A variety of frequencies are produced by man-made objects, ranging from high to low frequencies, and [...] Read more.
Anthropogenic noise can have diverse effects on natural ecosystems, but less is known about the degree to which noise can alter organisms in comparison to other disturbances. A variety of frequencies are produced by man-made objects, ranging from high to low frequencies, and we studied infrasound (<20 Hz) produced by wind turbines and trains. We estimated the number, mass and viability of seeds produced by flowers of Plains pricklypear (Opuntia polyacantha Haw.) that were left open to pollinators, hand-pollinated or bagged to exclude pollinators. Each pollination treatment was applied to plants at varying distances from wind turbines and railways (≤25 km). Self-pollinated Opuntia polyacantha and plants within the wind facility produced ≥1.6 times more seeds in the bagged treatments compared to more distant sites. Seed mass and the percent of viable seeds decreased with distance from infrasound. Viability of seeds was >70% for most treatments and sites. If wind facilities, railways and other man-made structures produce infrasound that increases self-pollination, crops and native plants near sources may produce heavier seeds with higher viability in the absence of pollinators, but genetic diversity of plants may decline due to decreased cross-pollination. Full article
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15 pages, 1273 KiB  
Article
Fungal Pretreatment of Alperujo for Bioproduct Recovery and Detoxification: Comparison of Two White Rot Fungi
by Viviana Benavides, Gustavo Ciudad, Fernanda Pinto-Ibieta, Elisabet Aranda, Victor Ramos-Muñoz, Maria A. Rao and Antonio Serrano
Agronomy 2025, 15(8), 1851; https://doi.org/10.3390/agronomy15081851 - 31 Jul 2025
Viewed by 198
Abstract
Alperujo, a solid by-product from the two-phase olive oil extraction process, poses significant environmental challenges due to its high organic load, phytotoxicity, and phenolic content. At the same time, it represents a promising feedstock for recovering value-added compounds such as phenols and volatile [...] Read more.
Alperujo, a solid by-product from the two-phase olive oil extraction process, poses significant environmental challenges due to its high organic load, phytotoxicity, and phenolic content. At the same time, it represents a promising feedstock for recovering value-added compounds such as phenols and volatile fatty acids (VFAs). When used as a substrate for white rot fungi (WRF), it also produces ligninolytic enzymes. This study explores the use of two native WRF, Anthracophyllum discolor and Stereum hirsutum, for the biotransformation of alperujo under solid-state fermentation conditions, with and without supplementation of copper and manganese, two cofactors known to enhance fungal enzymatic activity. S. hirsutum stood out for its ability to release high concentrations of phenolic compounds (up to 6001 ± 236 mg gallic acid eq L−1) and VFAs (up to 1627 ± 325 mg L−1) into the aqueous extract, particularly with metal supplementation. In contrast, A. discolor was more effective in degrading phenolic compounds within the solid matrix, achieving a 41% reduction over a 30-day period. However, its ability to accumulate phenolics and VFAs in the extract was limited. Both WRF exhibited increased enzymatic activities (particularly Laccase and Manganese Peroxidase) with the addition of Cu-Mn, highlighting the potential of the aqueous extract as a natural source of biocatalysts. Phytotoxicity assays using Solanum lycopersicum seeds confirmed a partial detoxification of the treated alperujo. However, none of the fungi could entirely eliminate inhibitory effects on their own, suggesting the need for complementary stabilization steps before agricultural reuse. Overall, the results indicate that S. hirsutum, especially when combined with metal supplementation, is better suited for valorizing alperujo through the recovery of bioactive compounds. Meanwhile, A. discolor may be more suitable for detoxifying the solid phase strategies. These findings support the integration of fungal pretreatment into biorefinery schemes that valorize agroindustrial residues while mitigating environmental issues. Full article
(This article belongs to the Section Agricultural Biosystem and Biological Engineering)
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15 pages, 6331 KiB  
Article
Integrative Analysis of Iso-Seq and RNA-Seq Identifies Key Genes Related to Fatty Acid Biosynthesis and High-Altitude Stress Adaptation in Paeonia delavayi
by Qiongji He, Wenjue Yuan, Rui Wang, Wengao Yang, Guiqing He, Jinglong Cao, Yan Li, Lei Ye, Zhaoguang Li and Zhijiang Hou
Genes 2025, 16(8), 919; https://doi.org/10.3390/genes16080919 (registering DOI) - 30 Jul 2025
Viewed by 167
Abstract
Background/Objectives: Paeonia delavayi, a high-altitude-adapted medicinal and oil-producing plant, exhibits broad elevational distribution. Understanding how environmental factors regulate its growth across altitudes is critical for optimizing cultivation and exploiting its economic potential. Methods: In this study, we conducted a comprehensive Iso-Seq [...] Read more.
Background/Objectives: Paeonia delavayi, a high-altitude-adapted medicinal and oil-producing plant, exhibits broad elevational distribution. Understanding how environmental factors regulate its growth across altitudes is critical for optimizing cultivation and exploiting its economic potential. Methods: In this study, we conducted a comprehensive Iso-Seq and RNA-seq analysis to elucidate the transcriptional profile across diverse altitudes and three seed developmental stages. Results: Using Pacbio full-length cDNA sequencing, we identified 39,267 full-length transcripts, with 80.03% (31,426) achieving successful annotation. RNA-seq analysis uncovered 11,423 and 9565 differentially expressed genes (DEGs) in response to different altitude and developmental stages, respectively. KEGG analysis indicated that pathways linked to fatty acid metabolism were notably enriched during developmental stages. In contrast, pathways associated with amino acid and protein metabolism were significantly enriched under different altitudes. Furthermore, we identified 34 DEGs related to fatty acid biosynthesis, including genes encoding pivotal enzymes like biotin carboxylase, carboxyl transferase subunit alpha, malonyl-CoA-acyl carrier protein transacylase, 3-oxoacyl-ACP reductase, 3-hydroxyacyl-ACP dehydratase, and stearoyl-ACP desaturase enoyl-ACP reductase. Additionally, ten DEGs were pinpointed as potentially involved in high-altitude stress response. Conclusions: These findings provide insights into the molecular mechanisms of fatty acid biosynthesis and adaptation to high-altitude stress in peony seeds, providing a theoretical foundation for future breeding programs aimed at enhancing seed quality. Full article
(This article belongs to the Section Genes & Environments)
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17 pages, 2601 KiB  
Article
Tree Selection of Vernicia montana in a Representative Orchard Cluster Within Southern Hunan Province, China: A Comprehensive Evaluation Approach
by Juntao Liu, Zhexiu Yu, Xihui Li, Ling Zhou, Ruihui Wang and Weihua Zhang
Plants 2025, 14(15), 2351; https://doi.org/10.3390/plants14152351 - 30 Jul 2025
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Abstract
With the objective of identifying superior Vernicia montana trees grounded in phenotypic and agronomic traits, this study sought to develop and implement a comprehensive evaluation method which would provide a practical foundation for future clonal breeding initiatives. Using the Vernicia montana propagated from [...] Read more.
With the objective of identifying superior Vernicia montana trees grounded in phenotypic and agronomic traits, this study sought to develop and implement a comprehensive evaluation method which would provide a practical foundation for future clonal breeding initiatives. Using the Vernicia montana propagated from seedling forests grown in the Suxian District of Chenzhou City in southern Hunan Province, we conducted pre-selection, primary selection, and re-selection of Vernicia montana forest stands and took the nine trait indices of single-plant fruiting quantity, single-plant fruit yield, disease and pest resistance, fruit ripening consistency, fruit aggregation, fresh fruit single-fruit weight, fresh fruit seed rate, dry seed kernel rate, and seed kernel oil content rate as the optimal evaluation indexes and carried out cluster analysis and a comprehensive evaluation in order to establish a comprehensive evaluation system for superior Vernicia montana trees. The results demonstrated that a three-stage selection process—consisting of pre-selection, primary selection, and re-selection—was conducted using a comprehensive analytical approach. The pre-selection phase relied primarily on sensory evaluation criteria, including fruit count per plant, tree size, tree morphology, and fruit clustering characteristics. Through this rigorous screening process, 60 elite plants were selected. The primary selection was based on phenotypic traits, including single-plant fruit yield, pest and disease resistance, and uniformity of fruit ripening. From this stage, 36 plants were selected. Twenty plants were then selected for re-selection based on key performance indicators, such as fresh fruit weight, fresh fruit seed yield, dry seed kernel yield, and oil content of the seed kernel. Then the re-selected optimal trees were clustered and analyzed into three classes, with 10 plants in class I, 7 plants in class II, and 3 plants in class III. In class I, the top three superior plants exhibited outstanding performance across key traits: their fresh fruit weight per fruit, fresh fruit seed yield, dry seed yield, and seed kernel oil content reached 41.61 g, 42.80%, 62.42%, and 57.72%, respectively. Compared with other groups, these figures showed significant advantages: 1.17, 1.09, 1.12, and 1.02 times the average values of the 20 reselected superior trees; 1.22, 1.19, 1.20, and 1.08 times those of the 36 primary-selected superior trees; and 1.24, 1.25, 1.26, and 1.19 times those of the 60 pre-selected trees. Fruits counts per plant and the number of fruits produced per plant of the best three plants in class I were 885 and 23.38 kg, respectively, which were 1.13 and 1.18 times higher than the average of 20 re-selected superior trees, 1.25 and 1.30 times higher than the average of 36 first-selected superior trees, and 1.51 and 1.58 times higher than the average of 60 pre-selected superior trees. Class I superior trees, especially the top three genotypes, are suitable for use as mother trees for scion collection in grafting. The findings of this study provide a crucial foundation for developing superior clonal varieties of Vernicia montana through selective breeding. Full article
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