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24 pages, 958 KiB  
Article
Optimizing Aspergillus oryzae Inoculation Dosage and Fermentation Duration for Enhanced Protein Content in Soybean Meal and Its Influence on Dog Food Extrusion
by Youhan Chen, Thomas Weiss, Donghai Wang, Sajid Alavi and Charles Gregory Aldrich
Processes 2025, 13(8), 2441; https://doi.org/10.3390/pr13082441 - 1 Aug 2025
Viewed by 281
Abstract
This study aimed to optimize the inoculation dosage and fermentation duration to enhance the protein content and reduce soluble oligosaccharides in soybean meal using Aspergillus oryzae and assessed its performance in dog food extrusion. A 3 × 5 factorial design was used to [...] Read more.
This study aimed to optimize the inoculation dosage and fermentation duration to enhance the protein content and reduce soluble oligosaccharides in soybean meal using Aspergillus oryzae and assessed its performance in dog food extrusion. A 3 × 5 factorial design was used to determine the optimal fermentation conditions. These conditions were applied to ferment soybean meal in bulk for nutritional analysis. Finally, the impact of fermentation on extrusion processing was assessed by formulating and extruding four diets: SBM (30% soybean meal), AMF (30% soybean meal with 1% Amaferm®A. oryzae biomass), FSBM (30% fermented soybean meal), and SPI (18% soy protein isolate). Diets were extruded with a single-screw extruder, and physical characteristics of kibbles, particle size distribution, and viscosity of raw mixes were analyzed. The optimal fermentation conditions were 1 × 104 spore/g substrate for 36 h, which increased the crude protein content by 4.63% DM, methionine and cysteine total content by 0.15% DM, and eliminated sucrose, while significantly reducing stachyose, raffinose, and verbascose (95.22, 87.37, and 41.82%, respectively). The extrusion results showed that FSBM had intermediate specific mechanical energy (SME), in-barrel moisture requirements, and sectional expansion index (198.7 kJ/kg, 28.2%, and 1.80, respectively) compared with SBM (83.7 kJ/kg, 34.5%, and 1.30, respectively) and SPI (305.3 kJ/kg, 33.5%, and 2.55, respectively). The FSBM also exhibited intermediate particle size distribution and the least raw mix viscosity. These findings demonstrate that A. oryzae fermentation enhances the nutrient profile of soybean meal while improving extrusion efficiency and kibble quality, supporting its potential use as a sustainable pet food ingredient. Full article
(This article belongs to the Special Issue Feature Papers in the "Food Process Engineering" Section)
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26 pages, 3038 KiB  
Article
Profiling Hydrophilic Cucurbita pepo Seed Extracts: A Study of European Cultivar Variability
by Adina-Elena Grasu, Roman Senn, Christiane Halbsguth, Alexander Schenk, Veronika Butterweck and Anca Miron
Plants 2025, 14(15), 2308; https://doi.org/10.3390/plants14152308 - 26 Jul 2025
Viewed by 197
Abstract
Cucurbita pepo (CP) seeds are traditionally used to alleviate lower urinary tract symptoms associated with benign prostatic hyperplasia and overactive bladder. While these effects are often attributed to lipophilic constituents, recent studies have highlighted the therapeutic potential of oil-free hydroethanolic extracts. However, their [...] Read more.
Cucurbita pepo (CP) seeds are traditionally used to alleviate lower urinary tract symptoms associated with benign prostatic hyperplasia and overactive bladder. While these effects are often attributed to lipophilic constituents, recent studies have highlighted the therapeutic potential of oil-free hydroethanolic extracts. However, their composition remains insufficiently characterized, considering the species’ significant phenotypic and phytochemical variability. This study aimed to characterize the phytochemical profile of hydrophilic hydroethanolic seed extracts from ten CP cultivars originating from different European regions, with a focus on compositional variability. The elemental composition, along with primary and secondary metabolites, was analyzed using established spectroscopic and chromatographic methods. The extracts showed considerable variation in protein (45.39 to 114.58 mg/g dw) and free amino acid content (46.51 to 111.10 mg/g dw), as well as differences in elemental composition. Principal component analysis revealed distinct clustering patterns, with several samples displaying metabolite profiles comparable to the Cucurbita pepo var. styriaca variety currently recommended by the European Pharmacopoeia (Ph. Eur.) and the Committee on Herbal Medicinal Products (HMPC). These findings open the possibility of using other CP varieties as alternative sources for extract preparation and offer novel insights into the composition of less explored hydrophilic extracts derived from CP seeds. Full article
(This article belongs to the Section Phytochemistry)
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16 pages, 8038 KiB  
Article
Comparative Transcriptome and Volatile Metabolome Analysis of Gossypium hirsutum Resistance to Verticillium Wilt
by Ni Yang, Chaoli Xu, Yajun Liang, Juyun Zheng, Shiwei Geng, Fenglei Sun, Shengmei Li, Chengxia Lai, Mayila Yusuyin, Zhaolong Gong and Junduo Wang
Genes 2025, 16(8), 877; https://doi.org/10.3390/genes16080877 - 25 Jul 2025
Viewed by 198
Abstract
Background: In recent years, changes in climate conditions and long-term continuous cropping have led to the increased occurrence of Verticillium wilt in various cotton-growing regions, causing significant economic losses in cotton production. Research has shown that volatile substances are closely linked to plant [...] Read more.
Background: In recent years, changes in climate conditions and long-term continuous cropping have led to the increased occurrence of Verticillium wilt in various cotton-growing regions, causing significant economic losses in cotton production. Research has shown that volatile substances are closely linked to plant disease resistance; however, studies on their roles in the response of cotton to Verticillium wilt, including their relationship with gene regulation, are limited. Methods: In this study, the transcriptomes and metabolomes of Xinluzao 57 (a highly susceptible Verticillium wilt variety) and 192,868 (a highly resistant Verticillium wilt variety) were sequenced at different time points after inoculation with Verticillium wilt. Results: A total of 21,911 commonly differentially expressed genes (DEGs) were identified within and between the materials, and they were clustered into eight groups. Significant annotations were made in pathways related to amino acids and anthocyanins. Metabolomics identified and annotated 26,200 volatile metabolites across nine categories. A total of 158 differentially accumulated metabolites (DAMs) were found within and between the materials; three clusters were identified, and the 10 metabolites with the most significant fold changes were highlighted. Weighted gene coexpression network analysis (WGCNA) revealed that 13 genes were significantly correlated with guanosine, 6 genes were correlated with 2-deoxyerythritol, and 32 genes were correlated with raffinose. Conclusions: Our results provide a foundation for understanding the role of volatile substances in the response of cotton to Verticillium wilt and offer new gene resources for future research on Verticillium wilt resistance. Full article
(This article belongs to the Special Issue Genetic Research on Crop Stress Resistance and Quality Traits)
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21 pages, 6386 KiB  
Article
Exploring Composition and Within-Population Variation in the Phloem Exudate “Manna” in Eucalyptus viminalis
by Erin C. P. M. Bok, Geoffrey M. While, Peter A. Harrison and Julianne M. O’Reilly-Wapstra
Plants 2025, 14(15), 2294; https://doi.org/10.3390/plants14152294 - 25 Jul 2025
Viewed by 280
Abstract
Sugary phloem exudates are produced by many plant species and play key roles in carbon storage, defense, and ecological interactions. Among eucalypts, one such exudate, manna, is an important carbohydrate source for birds, mammals, and insects. Despite its ecological relevance, little is known [...] Read more.
Sugary phloem exudates are produced by many plant species and play key roles in carbon storage, defense, and ecological interactions. Among eucalypts, one such exudate, manna, is an important carbohydrate source for birds, mammals, and insects. Despite its ecological relevance, little is known about the composition and intra-specific variability of manna. Here, we investigated patterns of manna production in Eucalyptus viminalis, a widespread foundation tree species in southeastern Australia. We developed a repeatable ex situ method to extract and analyze manna, allowing us to characterize its sugar composition and examine variation within and between trees. Across years, manna contained six sugars, with sucrose and raffinose dominant. We found substantial variation in both the quality (sucrose/raffinose ratio) and quantity (mg) of manna produced. Both declined with increasing tree size (DBH), while quality increased with branch circumference. Seasonal and annual variation in manna was also evident, with quality increasing under drier conditions (positive correlation with aridity). Our findings demonstrate substantial intra-specific variation in phloem exudates (manna), shaped by temporal and tree-level factors. These patterns offer a foundation for future research into the ecological and physiological drivers of exudate variation and resource availability in foundation species like E. viminalis. Full article
(This article belongs to the Section Plant Ecology)
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10 pages, 3033 KiB  
Article
Glycosidase Isoforms in Honey and the Honey Bee (Apis mellifera L.): Differentiating Bee- and Yeast-Derived Enzymes and Implications for Honey Authentication
by Ratko Pavlović, Sanja Stojanović, Marija Pavlović, Nenad Drulović, Miroslava Vujčić, Biljana Dojnov and Zoran Vujčić
Insects 2025, 16(6), 622; https://doi.org/10.3390/insects16060622 - 12 Jun 2025
Viewed by 667
Abstract
The enzymes in honey can originate not only from bees and the plants from which the bees collect pollen and nectar but also from feed provided by beekeepers. Enzymes that hydrolyze sucrose—present in honey (α-glucosidase) or honey adulterated with invert syrup (β-fructofuranosidase)—can be [...] Read more.
The enzymes in honey can originate not only from bees and the plants from which the bees collect pollen and nectar but also from feed provided by beekeepers. Enzymes that hydrolyze sucrose—present in honey (α-glucosidase) or honey adulterated with invert syrup (β-fructofuranosidase)—can be distinguished using zymography, where enzymatic bands are detected with nitroblue tetrazolium (NBT) after sugar removal via ultrafiltration. This method enables the identification of honey produced in hives that have been improperly fed with invert syrup, leading to the mixture of natural honey and syrup, and offers a practical tool to detect indirect adulteration. The NBT assay, in combination with ultrafiltration, was used to determine the isoelectric point of honey bee α-glucosidases. The pI value of 6.63 for isoforms found in the head, midgut, and natural honey extracts during winter can be attributed to α-glucosidase III. Two additional isoforms with isoelectric points of 5.20 and 5.77 were observed in the midgut extract and may correspond to α-glucosidase I and II. The difference between α-glucosidase and β-fructofuranosidase was confirmed using a substrate specificity test, followed by thin-layer chromatography, where it was confirmed that α-glucosidase from natural honey, bee head, and bee midgut does not hydrolyze raffinose, in contrast to yeast β-fructofuranosidase. Full article
(This article belongs to the Special Issue Current Advances in Pollinator Insects)
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17 pages, 2412 KiB  
Article
Postharvest Shading Modulates Saccharide Metabolic Flux and Enhances Soluble Sugar Accumulation in Tobacco Leaves During Curing: A Targeted Glycomics Perspective
by Kesu Wei, Yan Wang, Dong Xiang, Lei Yang, Yijun Yang, Heng Wang, Jiyue Wang, Shengjiang Wu, Yonggao Tu and Chenggang Liang
Agronomy 2025, 15(6), 1375; https://doi.org/10.3390/agronomy15061375 - 4 Jun 2025
Viewed by 443
Abstract
Saccharides critically influence tobacco quality. To elucidate the effects of postharvest shading (PS) pre-curing on saccharide metabolic flux, a targeted glycomics analysis was conducted. Compared to light exposure (CK), PS delayed chlorophyll degradation during pre-curing but accelerated yellowing, ultimately resulting in similar pigment [...] Read more.
Saccharides critically influence tobacco quality. To elucidate the effects of postharvest shading (PS) pre-curing on saccharide metabolic flux, a targeted glycomics analysis was conducted. Compared to light exposure (CK), PS delayed chlorophyll degradation during pre-curing but accelerated yellowing, ultimately resulting in similar pigment levels. Additionally, PS inhibited photosynthesis, leading to reduced starch content and increased soluble sugar content before curing. Furthermore, PS altered the starch-to-sugar conversion, ultimately resulting in significantly higher soluble sugar content and lower starch content. Targeted glycomics analysis identified 21 saccharides, with glucose, D-fructose, and sucrose being dominant. Notably, PS ultimately increased glucose, D-fructose, and sucrose levels by 74.09%, 66.49%, and 17.36%, respectively. Pairwise comparisons revealed 6, 12, 5, 13, 10, and 11 differentially expressed metabolites before curing and at 38, 40, 42, 54, and 68 °C during curing, respectively, between PS and CK. Conjoint analysis identified methylgalactoside and three oligosaccharides (sucrose, raffinose, and maltose) as the central metabolites of saccharide metabolism during curing. D-mannose, D-sorbitol, and D-glucuronic acid were identified as biomarkers for assessing storage-induced metabolic perturbations using random forest algorithms. Collectively, these findings suggest that PS might enhance tobacco quality via carbohydrate metabolism modulation, providing a scientific basis for pre-curing protocol optimization and industrial application. Full article
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17 pages, 5458 KiB  
Article
Integrated Metabolome and Microbiome Analysis Reveals the Regulatory Effects of Fermented Soybean Meal on the Gut Microbiota of Late Gestation
by Yantao Li, Lele Fu, Yushi Chen, Hua Yang, Yingping Xiao, Ying Ren and Cheng Wang
Fermentation 2025, 11(6), 315; https://doi.org/10.3390/fermentation11060315 - 31 May 2025
Viewed by 770
Abstract
Late gestation is a critical period for regulating maternal peripartum physiological metabolism and gut microbiota balance. Fermented diets have been widely recognized as effective exogenous nutritional interventions capable of modulating the maintenance of gut microbiota homeostasis. However, the mechanism through which fermented diets [...] Read more.
Late gestation is a critical period for regulating maternal peripartum physiological metabolism and gut microbiota balance. Fermented diets have been widely recognized as effective exogenous nutritional interventions capable of modulating the maintenance of gut microbiota homeostasis. However, the mechanism through which fermented diets modulate the gut microbiota in late-gestation remains poorly understood. In this study, an in vitro fermentation model combined with chemical composition analysis, untargeted metabolomics, and high-throughput sequencing was employed to investigate the metabolic alterations during soybean meal (SBM) fermentation and the regulatory effects of fermented soybean meal (FSBM) on gut microbiota of late-gestation sows. The findings revealed that fermentation significantly increased the levels of crude protein, lactic acid, acid-soluble protein, lysine, histidine, and total amino acids of SBM. Conversely, the levels of crude fiber, NDF, ADF, starch, and non-starch polysaccharides were markedly reduced, compared to the unfermented group. A total of 941 differentially expressed metabolites were identified between SBM and FSBM. Specifically, FSBM elevated the levels of lactic acid, L-pyroglutamic acid, 2-aminoisobutyric acid, and tyrosine, while substantially decreasing the levels of raffinose, sucrose, and stachyose. Metabolic pathway analysis identified glutathione metabolism, tyrosine metabolism, and pantothenate and coenzyme A (CoA) biosynthesis as the key pathways involved in SBM fermentation. In vitro fermentation experiments demonstrated that FSBM substantially increased the production of short-chain fatty acids (SCFAs) and notably increased the relative abundance of sows gut commensal Lactobacillus and Limosilactobacillus in late gestation. In summary, this study demonstrated that co-fermentation with bacteria and enzymes pretreatment of soybean meal reduced fiber components and enriched bioactive metabolites, optimizing intestinal microbial composition and increasing SCFA production in late-pregnant period. The present study provides novel insights into the regulatory effects of fermented diets on gut microbiota in late-gestation period from the perspectives of nutritional composition and metabolites. Full article
(This article belongs to the Section Probiotic Strains and Fermentation)
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16 pages, 5765 KiB  
Article
Integrative Analyses of Metabolome and Transcriptome Reveal Scion–Stock Asymmetry Reduction and Shift of Sugar Metabolism During Graft Junction Formation in Malus Domestica (‘Hanfu’) Homograft
by Wenting Huang, Shengyuan Wang, Chong Mao, Ling Xiang, Xiao Zhang, Feng Jiang, Yuqin Cheng and Tianzhong Li
Int. J. Mol. Sci. 2025, 26(11), 5290; https://doi.org/10.3390/ijms26115290 - 30 May 2025
Viewed by 389
Abstract
Grafting is widely used as a breeding method to enhance productivity and resilience. However, the mechanisms of graft healing remain poorly understood. In this study, we performed Malus domestica (‘Hanfu’) homograft and observed morphological and anatomical changes during the healing process in the [...] Read more.
Grafting is widely used as a breeding method to enhance productivity and resilience. However, the mechanisms of graft healing remain poorly understood. In this study, we performed Malus domestica (‘Hanfu’) homograft and observed morphological and anatomical changes during the healing process in the graft junction within 40 days after grafting (DAG). The results showed that the healing process was divided into two phases: 0–20 days (callus proliferation phase) and 20–40 days (vascular bundle reconnection phase). During the early stage (20 DAG), gene expression exhibited asymmetry between the scion and rootstock, whereas synchronization occurred in the late stage (40 DAG). Transcriptomic and metabolomic analyses of the scion and rootstock during these two critical phases identified that differentially expressed genes (DEGs) were enriched in “Carbon fixation by Calvin cycle” and “photosynthesis-related pathways”, while differentially expressed metabolites (DEMs) were clustered in “Galactose metabolism”, implying a critical role of carbohydrates in grafting. Genes encoding enzymes involved in sugar biosynthesis, such as amylase (MdAMY), invertase (MdINV), galactinol synthase (MdGS), raffinose synthase (MdRS), and stachyose synthase (MdSS), were generally more highly expressed during Phase I than Phase II. In contrast, genes encoding enzymes related to sugar consumption, such as fructose kinases (MdSUS), cellulose synthases (MdCESA), and galacturonosyltransferase (MdGAUT), showed weak expression in Phase I but were strongly activated in Phase II. Glucose, sucrose, galactose, and melibiose levels increased significantly at 20 DAG compared with 0 DAG and subsequently decreased by 40 DAG. Exogenous application of 0.5% sucrose, raffinose, or melibiose significantly enhanced vascular bundle reconnection rates at 7 DAG compared with the control group (p < 0.01), confirming the pivotal role of sugar metabolism in graft healing. Full article
(This article belongs to the Section Molecular Plant Sciences)
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14 pages, 892 KiB  
Article
Metabolomic Analysis Provides Insights into Bud Paradormancy in Camellia sinensis cv. Huangdan
by Mingjie Chen, Zhenghua Du, Wenjie Yue, Xiangrui Kong, Quanming Xu, Dongsheng Fang and Changsong Chen
Int. J. Mol. Sci. 2025, 26(11), 5094; https://doi.org/10.3390/ijms26115094 - 26 May 2025
Viewed by 350
Abstract
Bud paradormancy has been widely studied in perennial deciduous woody species, but little attention has been paid to paradormancy set and release in perennial evergreen tree species. Here, shoot bud paradormancy in Camellia sinensis cv. Huangdan was studied by untargeted metabolomics. We found [...] Read more.
Bud paradormancy has been widely studied in perennial deciduous woody species, but little attention has been paid to paradormancy set and release in perennial evergreen tree species. Here, shoot bud paradormancy in Camellia sinensis cv. Huangdan was studied by untargeted metabolomics. We found that after removing the axillary floral buds for one day, the paradormancy of the axillary shoot buds was released. The paradormant shoot buds had lower glucose-1-phosphate, fructose, and D-(-)-tagatofuranose content but higher trehalose, raffinose, galactinol, and α-D-xylopyranose content. Meanwhile, high levels of asparagine were accumulated. Flavonoids were differentially accumulated, and higher levels of three flavone glycosides (C-diglucosylapigenin, apigenin 6-C-glucoside 8-C-arabinoside, and prunin) and four proanthocyanidins (Procyanidin trimer isomer 1, Galloylprocyanidin dimer, Procyanidin trimer isomer 3, and Galloylated trimeric proanthocyanidin) were accumulated in paradormant shoot buds. During the paradormancy-to-growth transition, all these metabolites were reversed. These data suggest that the reconfiguration of carbon, nitrogen, and flavonoid metabolism could be an important aspect for the paradormancy set and release of tea axillary shoot buds. This study provided novel insights into shoot bud paradormancy set and release in a perennial evergreen tree species. Full article
(This article belongs to the Special Issue Advances in Tea Tree Metabolism and Genetics)
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17 pages, 449 KiB  
Article
New Functional Extruded Products Based on Corn and Lentil Flour Formulated with Winemaking By-Products
by Mario Cotacallapa-Sucapuca, José de J. Berrios, James Pan, Priscila Alves, Claudia Arribas, Mercedes M. Pedrosa, Patricia Morales and Montaña Cámara
Processes 2025, 13(6), 1635; https://doi.org/10.3390/pr13061635 - 22 May 2025
Viewed by 613
Abstract
To enhance the nutritional value of food products, new functional extruded products have been developed based on combinations of corn and lentil flour (70:30), with added salt (1.25%), sugar (5%), and resistant starch V (5–20%), and fortified winemaking by-products (fermented and unfermented pomace/pomace [...] Read more.
To enhance the nutritional value of food products, new functional extruded products have been developed based on combinations of corn and lentil flour (70:30), with added salt (1.25%), sugar (5%), and resistant starch V (5–20%), and fortified winemaking by-products (fermented and unfermented pomace/pomace seeds) (5–20%). The formulations were processed through a 32 mm twin screw extruder. The developed extrudates were analyzed for bioactive content. The findings show that among the experimental formulations, those with the highest concentration (20%) presented the greatest amounts of the following functional compound total dietary fiber, total arabinoxylans, resistant starch, total phenols, total flavonols, and total anthocyanins, and the lowest content of raffinose and stachyose. These study results indicate that extrusion is an effective method for adding value to underutilized commodities, such as winemaking by-products. A future sensory evaluation study will be conducted on the extruded products with the highest amount of winemaking by-products of 20%. Full article
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19 pages, 6542 KiB  
Article
Unveiling the Cold Acclimation of Alfalfa: Insights into Its Starch-Soluble Sugar Dynamic Transformation
by Lin Zhu, Zhiyong Li, Xiaoqing Zhang, Guomei Yin, Siqi Liu, Jinmei Zhao, Ying Yun, Maowei Guo and Jiaqi Zhang
Plants 2025, 14(9), 1313; https://doi.org/10.3390/plants14091313 - 26 Apr 2025
Viewed by 416
Abstract
Alfalfa (Medicago sativa) is a globally distributed economic legume crop used for forage and ecological restoration. We aimed to explore the mechanisms underlying the cold acclimation observed in this species. Our results for fall plant growth showed that non-dormant alfalfa (SD) [...] Read more.
Alfalfa (Medicago sativa) is a globally distributed economic legume crop used for forage and ecological restoration. We aimed to explore the mechanisms underlying the cold acclimation observed in this species. Our results for fall plant growth showed that non-dormant alfalfa (SD) maintained a vigorous growth rate compared to that of fall-dormant alfalfa (ZD); however, the winter survival rate of ZD was higher than that of SD. Among the ZD samples, the starch content first accumulated and then decreased; the sucrose content was consumed first along with simultaneous raffinose accumulation, which was followed by sucrose content accumulation, with consistent changes in the corresponding related synthase and hydrolase activity. SD exhibited the opposite trend. The transcriptome data showed that most of the differentially expressed genes were involved in carbon metabolism (ko01200), amino acid biosynthesis (ko01230), and starch and sucrose metabolism (ko00500). Our data clearly show that alfalfa’s cold acclimation mechanism is a complex process, with the establishment of stable carbon homeostasis; sucrose is first converted into starch and raffinose, and then, starch is converted into sucrose, which enables alfalfa’s cold resistance. The process is accompanied by CBF/DREB1A TF regulation. This study provides important insights into the cold acclimation mechanisms of alfalfa. Full article
(This article belongs to the Special Issue Carbon Management during Plant Acclimation to Abiotic Stresses)
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19 pages, 3487 KiB  
Article
QTLs Mapping and Identification of Candidate Genes Associated with Stachyose and Sucrose in Soybean (Glycine max L.)
by Chuanrong He, Yipu Wang, Changning Li, Yue Yang, Qian You, Aiqin Yue, Jingping Niu, Lixiang Wang, Weijun Du and Min Wang
Agronomy 2025, 15(4), 972; https://doi.org/10.3390/agronomy15040972 - 17 Apr 2025
Viewed by 593
Abstract
Soluble sugars are essential components in the physiology and metabolism of soybeans (Glycine max), playing a critical role in regulating key processes such as development, germination, and flavor formation. The soluble sugar content in soybean seeds is primarily composed of stachyose, [...] Read more.
Soluble sugars are essential components in the physiology and metabolism of soybeans (Glycine max), playing a critical role in regulating key processes such as development, germination, and flavor formation. The soluble sugar content in soybean seeds is primarily composed of stachyose, raffinose, sucrose, and glucose. This study aims to elucidate the genetic mechanisms underlying variation in the composition of soluble sugars in soybean seeds. A 128 recombinant inbred line (RIL) population was used, and concentrations of these four sugars were quantified across three years (2015, 2016, and 2017 in Shanxi). The analysis revealed that Jin Da 53 exhibited significantly higher sucrose and total sugar contents compared to Ping Nan, while stachyose levels were notably elevated in Ping Nan. Except for glucose content in 2017 and 2019, the RIL population’s traits all exhibited a normal distribution, making it suitable for QTL analyses. A total of twenty QTLs were identified for the four sugar components: five for glucose, four for raffinose, four for sucrose, three for stachyose, and four for total sugar, all with LOD > 2.5. Notably, three QTLs located on chromosome 10 (S10_37101443-S10_38298307, S10_38681635-S10_39134900, and S10_36697685-S10_36697916) were found to be associated with stachyose content, identifying one candidate gene, Glyma.10g154400, which was implicated in carbohydrate metabolic processes; a QTL located on chromosome 11 (96.881–105.5 cM) was identified in 2019 as a significant locus influencing sucrose content, identifying another candidate gene, Glyma.11g136200, which was linked to sugar/inositol transporter activity. Expression analysis of these candidate genes demonstrated the Glyma.10g154400 gene exhibited higher expression levels in varieties with lower stachyose content, whereas Glyma.11g136200 showed increased expression in lines with elevated sucrose levels. This study provides an important genetic basis for the breeding of soybean varieties with increased sugar content. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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17 pages, 2531 KiB  
Article
Evaluation of Sensory Properties and Short-Chain Fatty Acid Production in Fermented Soymilk on Addition of Fructooligosaccharides and Raffinose Family of Oligosaccharides
by Minnu Sasi, Sandeep Kumar, Om Prakash, Veda Krishnan, Vinayaka, Govind Singh Tomar, Jigni Mishra, Arpitha S R, Parshant Kaushik, Virendra Singh Rana and Anil Dahuja
Fermentation 2025, 11(4), 194; https://doi.org/10.3390/fermentation11040194 - 5 Apr 2025
Cited by 2 | Viewed by 707
Abstract
High potential is attributed to the concomitant use of probiotics and prebiotics in a single food product, called “synbiotics”, where the prebiotic component distinctly favours the growth and activity of probiotic microbes. This study implemented a detailed comparison between the prebiotic effect of [...] Read more.
High potential is attributed to the concomitant use of probiotics and prebiotics in a single food product, called “synbiotics”, where the prebiotic component distinctly favours the growth and activity of probiotic microbes. This study implemented a detailed comparison between the prebiotic effect of Fructooligosaccharides (FOSs) and Raffinose family oligosaccharides (RFOs) on the viable count of bacteria, hydrolysis into monosaccharides, the biosynthesis of short-chain fatty acids and sensory attributes of soymilk fermented with 1% (v/v) co-cultures of Lacticaseibacillus rhamnosus JCM1136 and Weissella confusa 30082b. The highest viable count of 1.21 × 109 CFU/mL was observed in soymilk with 3% RFOs added as a prebiotic source compared with MRS broth with 3% RFOs (3.21 × 108) and 3% FOS (6.2 × 107 CFU/mL) when replaced against glucose in MRS broth. Raffinose and stachyose were extensively metabolised (4.75 and 1.28-fold decrease, respectively) in 3% RFOs supplemented with soymilk, and there was an increase in glucose, galactose, fructose (2.36, 1.55, 2.76-fold, respectively) in soymilk supplemented with 3% FOS. Synbiotic soymilk with 3% RFOs showed a 99-fold increase in methyl propionate, while the one supplemented with 3% FOS showed an increase in methyl butyrate. The highest acceptability based on the sensory attributes was for soymilk fermented with 2% RFOs + 2% FOS + 2% table sugar + 1% vanillin (7.87 ± 0.52) with high mouth feel, product consistency, taste, and flavour. This study shows that the simultaneous administration of soy with probiotic bacteria and prebiotic oligosaccharides like FOSs and RFOs enhance the synergistic interaction between them, which upgraded the nutritional and sensory quality of synbiotic soymilk. Full article
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27 pages, 9025 KiB  
Article
Optimization, In Vitro, and In Silico Characterization of Theophylline Inhalable Powder Using Raffinose-Amino Acid Combination as Fine Co-Spray-Dried Carriers
by Petra Party, Lomass Soliman, Attila Nagy, Árpád Farkas and Rita Ambrus
Pharmaceutics 2025, 17(4), 466; https://doi.org/10.3390/pharmaceutics17040466 - 3 Apr 2025
Cited by 2 | Viewed by 1045
Abstract
Background/Objectives: Dry powder inhalation is an attractive research area for development. Therefore, this work aimed to develop inhalable co-spray-dried theophylline (TN) microparticles, utilizing raffinose-amino acid fine carriers intended for asthma therapy. The study addressed enhancing TN’s physicochemical and aerodynamic properties to ensure [...] Read more.
Background/Objectives: Dry powder inhalation is an attractive research area for development. Therefore, this work aimed to develop inhalable co-spray-dried theophylline (TN) microparticles, utilizing raffinose-amino acid fine carriers intended for asthma therapy. The study addressed enhancing TN’s physicochemical and aerodynamic properties to ensure efficient lung deposition. Methods: The process involves spray-drying each formulation’s solution using a mini spray drier. A rigorous assessment was conducted on particle size distribution, structural and thermal analysis, morphology study, in vitro and in silico aerodynamic investigation, and aerodynamic particle counter in addition to the solubility, in vitro dissolution, and diffusion of TN. Results: The carriers containing leucine and glycine revealed superior characteristics (mass median aerodynamic diameter (MMAD): 4.6–5 µm, fine particle fraction (FPF): 30.6–35.1%, and amorphous spherical structure) as candidates for further development of TN-DPIs, while arginine was excluded due to intensive aggregation and hygroscopicity, which led to poor aerodynamic performance. TN co-spray-dried samples demonstrated fine micronized particles (D [0.5]: 3.99–5.96 µm) with predominantly amorphous structure (crystallinity index: 24.1–45.2%) and significant solubility enhancement (~19-fold). Formulations containing leucine and leucine-glycine revealed the highest FPF (45.7–47.8%) and in silico lung deposition (39.3–40.1%), rapid in vitro drug release (~100% within 10 min), and improved in vitro diffusion (2.29–2.43-fold), respectively. Moreover, the aerodynamic counter confirmed the development of fine microparticles (mean number particle size = 2.3–2.02 µm). Conclusions: This innovative formulation possesses enhanced physicochemical, morphological, and aerodynamic characteristics of low-dose TN for local asthma treatment and could be applied as a promising carrier for dry powder inhaler development. Full article
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26 pages, 3134 KiB  
Review
Seed Storability in Forest Trees: Research Progress and Future Perspectives
by Hao Cai, Jun Shao and Yongbao Shen
Forests 2025, 16(3), 467; https://doi.org/10.3390/f16030467 - 6 Mar 2025
Viewed by 936
Abstract
The long-term storage of forest tree seeds holds critical significance for ecological restoration, forest resource conservation, and the sustainable development of forestry. In the context of plant biodiversity conservation, enhancing seed storability to achieve efficient utilization has garnered widespread attention. Seed storability, as [...] Read more.
The long-term storage of forest tree seeds holds critical significance for ecological restoration, forest resource conservation, and the sustainable development of forestry. In the context of plant biodiversity conservation, enhancing seed storability to achieve efficient utilization has garnered widespread attention. Seed storability, as a complex quantitative trait, is influenced by the combined effects of intrinsic seed characteristics and external environmental factors. The complexity of this issue presents significant challenges in maintaining seed longevity, particularly in the conservation of seeds from endangered species. This review discusses the essential factors affecting seed storability and the main causes of seed aging. It emphasizes the roles of molecular mechanisms, including raffinose family oligosaccharide (RFO), heat shock protein (HSP), late embryogenesis abundant (LEA) proteins, seed storage proteins (SSPs), and hormonal regulation, in modulating seed storability. Additionally, the evaluation criteria and methodologies for assessing seed storability are elaborated. The review highlights future research challenges, aiming to provide a comprehensive scientific foundation and practical guidance to improve seed storability. This will offer theoretical support for the sustainable management of forest resources. Full article
(This article belongs to the Section Genetics and Molecular Biology)
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