Search Results (181)

The textile industry’s reliance on synthetic dyes contributes significantly to pollution, highlighting the need for sustainable alternatives like biopigments. This study investigates the production and application of the biopigment prodigiosin, which was produced by Pseudomonas putida with a yield of 1.85 g/L. Prodigiosin was prepared under acidic, neutral, and alkaline conditions, resulting in varying protonation states that influenced its affinity for cotton and polyester fibers. Three surfactants (anionic, cationic, non-ionic) were tested, with non-ionic Tween 80 yielding a promising color strength (above 4) and fastness results with neutral prodigiosin at 1.3 g/L. Cotton and polyester demonstrated good washing (color difference up to 14 for cotton, 5 for polyester) and light fastness (up to 15 for cotton, 16 for polyester). Cellulose acetate, used in the conventional printing process as a thickener, produced superior color properties compared to commercial thickeners. Neutral prodigiosin achieved higher color strength, and cotton fabrics displayed halochromic properties, distinguishing them from polyester, which showed excellent fastness. Prodigiosin-printed samples also exhibited strong antimicrobial activity against Pseudomonas aeruginosa and retained halochromic properties over 10 pH cycles. These findings suggest prodigiosin as a sustainable dye alternative and pH sensor, with potential applications in biomedical materials, such as antimicrobial and pH-responsive wound dressings. Full article

Background/Objectives: Chloroquine (CQ) and hydroxychloroquine (HCQ) have been the subject of debate in the treatment of COVID-19 due to the lack of conclusive evidence regarding their efficacy and safety. Our study aims to investigate the molecular interaction between the enantiomers of CQ and HCQ with angiotensin-converting enzyme 2 (ACE2), focusing on the binding mechanism, affinity, and selectivity. Methods: We used in silico methods, including molecular docking, molecular dynamics, and binding free energy calculations using the MM-PBSA method, to evaluate the interaction between the enantiomers of CQ and HCQ with ACE2. Results: We identified three main interaction sites on ACE2 (α, β, and γ) with distinct characteristics based on the pocket size, hydrophilic/hydrophobic characteristics, and affinity energy. We observed that protonation states and ionic strength significantly influence the binding affinity and specificity. In particular, the selectivity of the β-site, characterized by its smaller size and hydrophilic residues, is preferential for species with the (R) configuration, whereas the α and γ binding sites, with a larger size and amphiphilic residues, have greater affinity for the (S) enantiomer of CQ and HCQ. Furthermore, ionic strength can affect ligand binding by modulating electrostatic interactions, molecular conformation, solvation, and the stability of the complex. Conclusions: Our findings reveal that protonation states and the ionic strength substantially impact the binding affinity and specificity, regulated by spatial and polar–electrostatic complementarity, as well as hydrophobic contributions. These results suggest that understanding the interaction between CQ and HCQ enantiomers with ACE2 could be useful for the design of novel therapies against COVID-19. Full article

The imidazo[4,5-b]pyridine scaffold, a versatile heterocyclic system, is renowned for its biological and chemical significance, yet its coordination chemistry with biologically relevant metal dications remains underexplored. This study investigates the proton and metal dication affinities of twelve tetracyclic organic molecules based on the imidazo[4,5-b]pyridine core, focusing on their interactions with Ca(II), Mg(II), Zn(II), and Cu(II). Employing a dual approach of electrospray ionization mass spectrometry (ESI-MS) and density functional theory (DFT) calculations, we characterized the formation, stability, and structural features of metal–ligand complexes. ESI-MS revealed distinct binding behaviors, with Cu(II) and Zn(II) forming stable mono- and dinuclear complexes, often accompanied by reduction processes (e.g., Cu(II) to Cu(I)), while Ca(II) and Mg(II) exhibited lower affinities. DFT analysis elucidated the electronic structures and thermodynamic stabilities, highlighting the imidazole nitrogen as the primary binding site and the influence of regioisomeric variations on affinity. Substituent effects were found to modulate binding strength, with electron-donating groups enhancing basicity and metal coordination. These findings provide a comprehensive understanding of the coordination chemistry of imidazo[4,5-b]pyridine derivatives, offering insights into their potential applications in metalloenzyme modulation, metal-ion sensing, and therapeutic chelation. Full article

The genome is continuously exposed to different harmful factors whose activity causes different types of lesions. On the other hand, during the DNA replication process, a ribonucleoside (rN) can be inserted more frequently than the occurrence of DNA damage in the genome. Notably, it can be expected that their presence and chemical lability change the electronic properties of the double helix. In this study, a short ds-oligo with a single rN was taken into consideration. The ground-state molecular geometry was obtained at the M06-2x/D95* level of theory in the aqueous phase, while the energy and vertical and adiabatic electron affinity and ionisation potential were obtained at M06-2x/6-31++G**. The obtained results indicate that the 3′,5′-phosphodiester bond cleavage is favourable after the adiabatic cation and anion states are achieved by ds-DNA. Moreover, the lowest ionisation potential and highest electron affinity of 2.76 and 5.55 eV, respectively, which make it a suitable endpoint for electrons and holes, have been found for the final product that contains a single-strand break. Additionally, after the internucleotide 3′,5′→2′,5′ bond migration process, proton-coupled electron transfer was found to occur. In this article, the electronic properties of short ds-DNA fragments with ribonucleoside inserts are reported for the first time. The obtained results suggest that rNs can play a significant role in the communication of repair and replication proteins via electron transfer, especially after rearrangement. Moreover, the discussed internucleotide bond stability changes after one-electron oxidation or reduction and can support new radiotherapy strategies that are safer and more effective. Further theoretical and experimental studies are highly warranted. Full article

This study presents a novel Basalt-based grafted graphitic carbon nitride composite (Basalt–MTES/g-C₃N₄) for the efficient pretreatment of Cr(VI) in ethylene wastewater. The composite was synthesized by the acid purification of natural Basalt, surface modification with hydroxymethyl triethoxysilane (MTES), and the subsequent grafting of g-C₃N₄. Characterization confirmed the uniform distribution of nano-sized g-C₃N₄ particles on a Basalt surface with intact chemical bonding, where 82.63% of melamine participated in g-C₃N₄ crystallization. The material exhibited a high specific surface area (403.55 m²/g) and mesoporous structure (34.29 nm). Acidic conditions promoted the protonation of amino groups in g-C₃N₄, significantly enhancing Cr(VI) adsorption via ion exchange. Adsorption kinetics followed the pseudo-second-order model, while isotherm data fitted the Langmuir monolayer adsorption mechanism. The composite achieved 97% Cr(VI) recovery through chromatographic extraction and retained 96.87% removal efficiency after five regeneration cycles. This work demonstrates a cost-effective, recyclable green pretreatment material for high-sensitivity Cr(VI) monitoring in ethylene industry wastewater, offering dual benefits in environmental remediation and regulatory compliance. The design synergizes natural Basalt’s stability with g-C₃N₄’s adsorption affinity, showing practical potential for sustainable wastewater treatment technologies. Full article

The effective management of High-Level Liquid Waste (HLLW) is critical for environmental and human health protection. The presence of platinum group metals (PGMs) in HLLW, particularly their refractory nature due to their high melting points, complicates vitrification processes. This study presents a targeted adsorption strategy using COF-42 for Pd²⁺ sequestration in HLLW systems. The comprehensive characterization of COF-42 and its Pd-loaded counterpart (Pd@COF-42) via PXRD, FT-IR, TGA, XPS, and SEM confirms structural robustness and successful Pd²⁺ incorporation. Kinetic and thermodynamic analyses reveal pseudo-second-order adsorption behavior with a maximum capacity of 170.6 mg/g, highlighting the exceptional Pd²⁺ affinity. Systematic optimization identifies HNO₃ concentration (≤3 M) and adsorbent dosage (≤30 mg) as critical parameters governing adsorption efficiency through protonation–deprotonation equilibria. Furthermore, COF-42 exhibits superior selectivity for Pd²⁺ over 13 competing metal ions and maintains ~80% adsorption efficiency after four regeneration cycles. These performance metrics originate from the synergistic interplay of (1) framework flexibility enabling adaptive Pd²⁺ coordination, (2) hierarchical porosity facilitating ion diffusion, and (3) dense –NH/–NH₂ groups acting as electron-rich chelation sites. Full article

A nanostructured sensing platform was developed by integrating gold-decorated lignin nanoparticles (AuLNPs) into electrospun polylactic acid (PLA) fibre mats. The composite material combines the high surface-to-volume ratio of PLA nanofibres with the chemical functionality of lignin—a polyphenolic biopolymer rich in hydroxyl and aromatic groups—enabling selective interactions with volatile amines through hydrogen bonding and Van der Waals forces. The embedded gold nanoparticles (AuNPs) further enhance the sensor’s electrical conductivity and provide catalytic sites for improved analyte interaction. The sensor exhibited selective adsorption of amine vapours, showing particularly strong affinity for dimethylamine (DMA), with a limit of detection (LOD) of approximately 440 ppb. Relative humidity (RH) was found to significantly influence sensor performance by facilitating amine protonation, thus promoting interaction with the sensing surface. The developed sensor demonstrated excellent selectivity, sensitivity and reproducibility, highlighting its potential for real-time detection of amines in environmental monitoring, industrial safety and healthcare diagnostics. Full article

Utilizing isomeric monomers to construct covalent organic frameworks (COFs) could easily and precisely regulate their structure in order to raise the photocatalytic performance towards two-step single-electron oxygen reduction reaction (ORR) to hydrogen peroxide (H₂O₂). Herein, isomeric anthraquinone (AQ)-based COFs (designated as 1,4-DQTP and 2,6-DQTP) were successfully fabricated through a simple yet effective one-step solvothermal synthesis approach, only utilizing isomeric monomers with alterations in the catalysts. Specifically, the black 1,4-DQTP displayed a high photocatalytic H₂O₂ production rate of 865.4 µmol g⁻¹ h⁻¹, with 2.44-fold enhancement compared to 2,6-DQTP (354.7 µmol g⁻¹ h⁻¹). Through a series of experiments such as electron paramagnetic resonance (EPR) spectroscopy and the free radical quenching experiments, as well as density functional theory (DFT) calculations, the photocatalytic mechanism revealed that compared with 2,6-DQTP, 1,4-DQTP possessed a stronger and broader visible light absorption capacity, and thus generated more photogenerated e⁻-h⁺ pairs. Ultimately, more photogenerated electrons were enriched on the AQ motif via a more apparent electron push–pull effect, which provided a stable transfer channel for e⁻ and thus facilitated the generation of superoxide anion radical intermediates (•O₂⁻). On the other hand, the negative charge region of AQ’s carbonyl group evidently overlapped with that of TP, indicating that 1,4-DQTP had a higher chemical affinity for the uptake of protons, and thus afforded a more favorable hydrogen donation for H⁺. As a consequence, the rational design of COFs utilizing isomeric monomers could synergistically raise the proton-coupled electron transfer (PCET) kinetics for two-step single-electron ORR to H₂O₂ under visible light illumination. This work provides some insights for the design and fabrication of COFs through rational isomer engineering to modulate their photocatalytic activities. Full article

The coordination chemistry, structural characterization, and biomolecular interactions of europium(III) and iron(III) complexes with the pyridoxal-semicarbazone (PLSC) ligand were thoroughly examined using experimental and computational approaches. Single-crystal X-ray diffraction revealed that the europium complex exhibits a nine-coordinate geometry with one protonated and one deprotonated PLSC ligand and nitrato and aqua ligands. In contrast, the iron complex adopts a six-coordinate structure featuring a monoprotonated PLSC, two chlorido, and an aqua ligand. Hirshfeld surface analysis confirmed the significance of intermolecular contacts in stabilizing the crystal lattice. Theoretical geometry optimizations using DFT methods demonstrated excellent agreement with experimental bond lengths and angles, thereby validating the reliability of the chosen computational levels for subsequent quantum chemical analyses. Quantum Theory of Atoms in Molecules (QTAIM) analysis was employed to investigate the nature of metal–ligand interactions, with variations based on the identity of the donor atom and the ligand’s protonation state. The biological potential of the complexes was evaluated through spectrofluorimetric titration and molecular docking. Eu-PLSC displayed stronger binding to human serum albumin (HSA), while Fe-PLSC showed higher affinity for calf thymus DNA (CT-DNA), driven by intercalation. Thermodynamic data confirmed spontaneous and enthalpy-driven interactions. These findings support using PLSC-based metal complexes as promising candidates for future biomedical applications, particularly in drug delivery and DNA targeting. Full article

Gas-phase basicity and basicity in acetonitrile solvent were investigated for a series of proton sponges derived from phosphazenyl phosphines. A range of aromatic and aliphatic scaffolds bearing phosphazenyl phosphine substituents were employed to modulate the basicity of these compounds, primarily by varying the distance between the phosphazenyl phosphine units. These proton sponges were shown to be exceptionally strong organic bases, with pK_a values in acetonitrile reaching up to 42.0 units and gas-phase proton affinities (PA) up to 307.0 kcal mol⁻¹. However, none exhibited higher basicity than the closely related phosphazenylphosphine systems, for which a pK_a value of 43.8 and PA value of 307.5 kcal mol⁻¹ was previously reportedIt was found that the proton-chelating effect, typically defined as the difference in proton affinity between bis- and mono-substituted systems (ΔPA), moderately influences basicity. However, it was also established that ΔPA should not be attributed exclusively to the elimination of electron-pair repulsion and the formation of hydrogen bond upon protonation, as has been commonly assumed in most previous studies of proton sponges, but must also account for mesomeric and inductive effects, as well as dispersion interactions. Full article

Laccases are versatile enzymes capable of oxidizing a wide variety of antibiotics. In this study, the mechanism of catalytic oxidation of first-generation tetracyclines, namely, oxytetracycline, tetracycline, and chlortetracycline, by the Melanocarpus albomyces laccase enzyme was investigated using molecular docking and DFT calculations. Molecular docking studies revealed that all three substrates exhibit negative interaction energies, indicating stable enzyme–substrate complexes, with tetracycline and chlortetracycline showing the highest binding affinities. Global reactivity indices obtained by DFT confirmed the high electrophilicity of the enzyme active site, particularly the aminoacidic residues Glu235 and His508, favoring electron transfer from the substrates. In addition, NBO analysis allowed quantification of the energy of hydrogen bonds in enzyme–substrate interactions, evidencing their key role in the stabilization of the complex. Proton transfer analysis suggested two possible mechanisms: (1) a direct concerted transfer and (2) a process mediated by water molecules. The results provide insights into the thermodynamics, electronic structure, and nature of intermolecular interactions governing the oxidation of tetracyclines by the enzyme, highlighting their potential in bioremediation strategies for antibiotic degradation. Full article

Background/Objectives: The thiazolo [5,4-d]pyrimidine scaffold is a class of drugs known for its anticancer, antitumor, anti-inflammatory, and antimicrobial properties. In this study, the electrochemical properties of novel thiazolo [5,4-d]pyrimidine derivatives and their interactions with DNA were characterized for the first time using voltammetric methods. Determining the interactions of new drug candidate molecules with DNA is crucial for drug development studies and is the main objective of this research. Methods: Both molecules were immobilized on the surface of the electrodes by passive adsorption, and their electrochemical properties were determined by voltammetric methods through reduction currents. Their interactions with DNA were carried out in the solution phase and examined by the changes in the oxidation peak potential and current of the guanine base. Results: For both molecules, it was determined that the electrochemical reduction processes are diffusion-controlled and irreversible, with an equal number of protons and electrons being transferred during this process. The detection limits for TP-NB (4-chloro-N-(5-chlorothiazolo [5,4-d]pyrimidin-2-yl)-3-nitrobenzamide) and TP-PC (1-(2-(4-(4-carbamoylpiperidin-1-yl)-3-nitrobenzamido)thiazolo [5,4-d]pyrimidin-5-yl)piperidine-4-carboxamide) were determined to be 12 µg/mL and 16 µg/mL, respectively. As a result of the interaction between both molecules with DNA, the guanine oxidation current decreased. It was found that TP-NB could act as an intercalator, while TP-PC could affect DNA electrostatically, both showing toxic effects on DNA. Conclusions: An electrochemical method was developed for the rapid, cost-effective, and sensitive detection of both molecules and their DNA interactions. Both compounds exhibited notable affinity towards DNA, as evidenced by significant changes in oxidation peak currents, shifts in peak potentials, and calculated toxicity values. These findings suggest their potential use as DNA-interacting drugs, such as anticancer and antimicrobial agents. Our study offers a quick, cost-effective, and reliable electrochemical approach for the evaluation of drug–DNA interactions. Full article

Comparative studies using lysophosphatidic acid (LPA) and the synthetic agonist, oleoyl-methoxy glycerophosphothionate (OMPT), in cells expressing the LPA₃ receptor revealed differences in the action of these agents. The possibility that more than one recognition cavity might exist for these ligands in the LPA₃ receptor was considered. We performed agonist docking studies exploring the whole protein to obtain tridimensional details of the ligand–receptor interaction. Functional in cellulo experiments using mutants were also executed. Our work includes blind docking using the unrefined and refined proteins subjected to hot spot predictions. Distinct ligand protonation (charge −1 and −2) states were evaluated. One LPA recognition cavity is located near the lower surface of the receptor close to the cytoplasm (Lower Cavity). OMPT displayed an affinity for an additional identification cavity detected in the transmembrane and extracellular regions (Upper Cavity). Docking targeted to Trp102 favored binding of both ligands in the transmembrane domain near the extracellular areas (Upper Cavity), but the associating amino acids were not identical due to close sub-cavities. A receptor model was generated using AlphaFold3, which properly identified the transmembrane regions of the sequence and co-modeled the lipid environment accordingly. These two models independently generated (with and without the membrane) and adopted essentially the same conformation, validating the data obtained. A DeepSite analysis of the model predicted two main binding pockets, providing additional confidence in the predicted ligand-binding regions and support for the relevance of the docking-based interaction models. In addition, mutagenesis was performed of the amino acids of the two detected cavities. In the in cellulo studies, LPA action was much less affected by the distinct mutations than that of OMPT (which was almost abolished). Therefore, docking and functional data indicate the presence of distinct agonist binding cavities in the LPA₃ receptor. Full article

This study elucidates the structural determinants and optogenetic potential of Archaerhodopsin HeAR, a proton pump from Halorubrum sp. Ejinoor isolated from Inner Mongolian salt lakes. Through heterologous expression in E. coli BL21 (DE3) and integrative biophysical analyses, we demonstrate that HeAR adopts a stable trimeric architecture (129 kDa) with detergent-binding characteristics mirroring bacteriorhodopsin (BR); however, it exhibits a 10 nm bathochromic spectral shift (λmax = 550 nm) and elevated proton affinity (Asp-95 pKa = 3.5 vs. BR Asp-85 pKa = 2.6), indicative of evolutionary optimization in its retinal-binding electrostatic microenvironment. Kinetic profiling reveals HeAR’s prolonged photocycle (100 ms vs. BR’s 11 ms), marked by rapid M-state decay (3.3 ms) and extended dark-adaptation half-life (160 min), a bistable behavior attributed to enhanced hydrogen bond persistence (80%) and reduced conformational entropy (RMSD = 2.0 Å). Functional assays confirm light-driven proton extrusion (0.1 ng H⁺/mg·s) with DCCD-amplified flux (0.3 ng H⁺/mg·s) and ATP synthesis (0.3 nmol/mg·s), underscoring its synergy with H⁺-ATPase. Phylogenetic and structural analyses reveal 95% homology with Halorubrum AR4 and conservation of 11 proton-wire residues, despite divergent Trp/Tyr/Ser networks that redefine chromophore stabilization. AlphaFold-predicted models (TM-score > 0.92) and molecular docking identify superior retinoid-binding affinity (ΔG = −12.27 kcal/mol), while spectral specificity (550–560 nm) and acid-stable photoresponse highlight its adaptability for low-irradiance neuromodulation. These findings position HeAR as a precision optogenetic tool, circumventing spectral overlap with excitatory opsins and enabling sustained hyperpolarization with minimized phototoxicity. By bridging microbial energetics and optobioengineering, this work expands the archaeal rhodopsin toolkit and provides a blueprint for designing wavelength-optimized photoregulatory systems. Full article

Nitrogen donor-based ligands are highly promising extractants for palladium separation from high-level liquid waste (HLLW). However, the electronic effect of these ligands, a critical factor influencing their complexation ability with Pd(II), remains largely unexplored. Herein, three picolinamide-based ligands were designed and synthesized, each featuring substituents with distinct electronic effects at the para-position of the pyridine (electro-donating methoxyl group for L-I, hydrogen for L-II, and electro-withdrawing ester group for L-III). The concurrent processes of Pd(II) coordination and ligand protonation enable the manipulation of pyridine nitrogen electronegativity, resulting in a tunable Pd(II) extraction performance. Notably, L-I exhibits the highest extraction efficiency at low acidities (≤1 M HNO₃) but the lowest extraction at high acidities (≥3 M HNO₃), whereas L-III shows the poorest efficiency at low acidities but the best performance at high acidities. The Job plot analysis and ESI-HRMS results reveal a 1:1 and 2:1 (L/Pd) stoichiometry in the Pd(II) complexation process. The single crystal X-ray analysis of Pd(NO₃)₂(L-II)₂ complex confirms a four-coordinated Pd(II) center, with two pyridine nitrogen atoms and two monodentate nitrate oxygens forming a quadrangular geometry. Density functional theory (DFT) calculations further indicate that the formation of 2:1 (L/Pd) complexes is energetically favored, and the stronger basicity of the nitrogen atoms correlates with a higher Pd(II) binding affinity and increased susceptibility to protonation. Full article