Search Results (203)

Background: Salmonella infections pose a serious threat to both animal and human health worldwide. Notably, there is an increasing trend in the resistance of Salmonella to fluoroquinolones, the first-line drugs for clinical treatment. Methods: Utilizing Salmonella Typhimurium CICC 10420 as the test strain, ciprofloxacin was used for in vitro induction to develop the drug-resistant strain H1. Changes in the minimum inhibitory concentrations (MICs) of various antimicrobial agents were determined using the broth microdilution method. Transcriptomic and metabolomic analyses were conducted to investigate alterations in gene and metabolite expression. A combined drug susceptibility test was performed to evaluate the potential of exogenous metabolites to restore antibiotic susceptibility. Results: The MICs of strain H1 for ofloxacin and enrofloxacin increased by 128- and 256-fold, respectively, and the strain also exhibited resistance to ceftriaxone, ampicillin, and tetracycline. A single-point mutation of Glu469Asp in the GyrB was detected in strain H1. Integrated multi-omics analysis showed significant differences in gene and metabolite expression across multiple pathways, including two-component systems, ABC transporters, pentose phosphate pathway, purine metabolism, glyoxylate and dicarboxylate metabolism, amino sugar and nucleotide sugar metabolism, pantothenate and coenzyme A biosynthesis, pyrimidine metabolism, arginine and proline biosynthesis, and glutathione metabolism. Notably, the addition of exogenous glutamine, in combination with tetracycline, significantly reduced the resistance of strain H1 to tetracycline. Conclusion: Ciprofloxacin-induced Salmonella resistance involves both target site mutations and extensive reprogramming of the metabolic network. Exogenous metabolite supplementation presents a promising strategy for reversing resistance and enhancing antibiotic efficacy. Full article

This study integrated non-targeted metabolomics and transcriptomics to investigate dynamic changes in Antheraea pernyi pupae across five developmental stages. Metabolomic analysis identified 1246 metabolites, primarily organic acids, lipids, heterocyclic compounds, and oxygen-containing organics. Principal component analysis revealed stage-specific metabolic profiles: amino acid derivatives (pyruvate, proline, lysine) declined, while pyrimidines (cytidine, uridine, β-alanine) and monosaccharides (glucose, mannose) increased. 18β-glycyrrhetinic and ursolic acids accumulated significantly in the middle and late stages. Transcriptomic analysis identified 7230 differentially expressed genes (DEGs), with 366, 1705, and 5159 significantly differentially expressed genes in the T1, T3, and T5 comparison groups, respectively. KEGG enrichment highlighted ABC transporters, amino acid/pyrimidine metabolism, and tyrosine pathways as developmentally critical, with aminoacyl-tRNA biosynthesis upregulated in later phases. Integrated multi-omics analysis revealed coordinated shifts in metabolites and genes across developmental phases, reflecting dynamic nutrient remodeling during pupal maturation. This study systematically delineates the molecular transitions driving pupal development in Antheraea pernyi pupae, uncovering conserved pathway interactions and mechanistic insights into nutrient metabolism. These findings provide a scientific foundation for leveraging pupal resources in functional food innovation and bioactive compound discovery for pharmaceutical applications. Full article

Efficient co-utilization of glucose and xylose from lignocellulosic biomass remains a critical bottleneck limiting the viability of sustainable biorefineries. While Corynebacterium glutamicum has emerged as a promising industrial host due to its robustness, further improvements in mixed-sugar co-utilization are needed. Here, we demonstrate how a single amino acid substitution can dramatically transform cellular sugar transport capacity. By combining rational strain engineering with continuous adaptive laboratory evolution, we evolved a ptsG-deficient C. glutamicum strain in glucose–xylose mixtures for 600 h under consistent selection pressure. Whole-genome sequencing revealed a remarkable finding: a single point mutation; exchanging proline for alanine in the myo-inositol/proton symporter IolT1 was sufficient to boost glucose uptake by 83% and xylose uptake by 20%, while increasing the overall growth rate by 35%. This mutation, located in a highly conserved domain, likely disrupts an alpha helical structure, thus enhancing transport function. Reverse engineering confirmed that this single change alone reproduces the evolved phenotype, representing the first report of an engineered IolT1 variant in PTS-independent C. glutamicum that features significantly enhanced substrate uptake. These results both provide an immediately applicable engineering target for biorefinery applications and demonstrate the power of evolutionary approaches to identify non-intuitive solutions to complex metabolic engineering challenges. Full article

Chiral covalent organic frameworks (COFs) hold great promise in heterogeneous asymmetric catalysis due to their designable structures and well-defined chiral microenvironments. However, precise control over the pore size of chiral COFs to optimize asymmetric catalytic performance remains challenging. Herein, we designed a proline-derived dihydrazide chiral monomer (L-DBP-Boc), which was subjected to Schiff-base reactions with two aromatic aldehydes of different lengths, 1,3,5-triformyl phloroglucinol (BTA) and 4,4′,4″-(1,3,5-triazine-2,4,6-triyl)tribenzaldehyde (TZ), to construct two hydrazone-linked chiral COFs with distinct pore sizes (L-DBP-BTA COF and L-DBP-TZ COF). Interestingly, the Boc protecting groups were removed in situ during COF synthesis. We systematically investigated the catalytic performance of these two chiral COFs in asymmetric aldol reactions and found that their pore sizes significantly influenced both catalytic activity and enantioselectivity. The large-pore L-DBP-TZ COF (pore size: 3.5 nm) exhibited superior catalytic performance under aqueous conditions at room temperature, achieving a yield of 98% and an enantiomeric excess (ee) value of 78%. In contrast, the small-pore L-DBP-BTA COF (pore size: 2.0 nm) showed poor catalytic performance. Compared to L-DBP-BTA COF, L-DBP-TZ COF demonstrated a 1.69-fold increase in yield and a 1.56-fold enhancement in enantioselectivity, possibly attributed to the facilitated diffusion and transport of substrates and products within the larger pore, thus improving the accessibility of active sites. This study presents a facile synthesis of pyrrolidine-functionalized chiral COFs and establishes the possible structure–activity relationship in their asymmetric catalysis, offering new insights for the design of efficient chiral COF catalysts. Full article

The strain of Oceanobacillus picturae DY09, as a typical halophilic microorganism, possesses distinctive salt adaptation mechanisms that hold significant application value in the fields of agriculture, industry, and biomedicine. To deeply analyze the salt-tolerance molecular mechanism of this strain, this research disclosed its salt-tolerance strategies under diverse salt concentrations through transcriptomics. In a low-salt environment, the DY09 strain adopted a “metabolic simplification” strategy, significantly reducing the metabolic load by promoting lysine degradation and inhibiting the biosynthesis of branched-chain amino acids and glycine betaine (GB) but upregulating the expression of the GB transporter gene betH and preferentially utilizing exogenous GB to maintain basic osmotic balance. When exposed to high-salt stress, this strain activated multiple regulatory mechanisms: it upregulated the expression of Na⁺/K⁺ antiporter proteins to maintain ionic homeostasis; the synthesis genes of amino acids such as arginine and proline were significantly upregulated, and the GB synthesis genes betA/B and the transporter gene betH were upregulated concurrently, which realized the synergistic operation of endogenous synthesis and exogenous uptake of osmoprotective substances. The expression level of the antioxidant enzyme systems is upregulated to scavenge reactive oxygen species. Simultaneously, the molecular chaperones groES/groEL and GB cooperate to maintain the functional stability of the protein. In this study, a trinity salt-tolerance-integrated strategy of “dynamic perception–hierarchical response–system synergy” of halophilic bacteria was initially proposed, which provided a research idea for exploring the salt–alkali-tolerant mechanism of halophilic bacteria and a theoretical basis for the further development and application of this strain. Full article

Declining freshwater resources have spurred interest in saline–alkali (SA) water aquaculture, with species like tilapia and rainbow trout demonstrating ecological plasticity in such environments. However, the molecular mechanisms underlying fish adaptation and quality impacts remain unclear. This study investigated the hybrid fish “Xianfeng No. 1” (Erythroculter ilishaeformis × Ancherythroculter nigrocauda), a key aquaculture species in China, under 60-day SA exposure. The results showed increased levels of oxidative stress markers (MDA) and antioxidant enzymes (SOD, CAT, GSH-Px), alongside improved quality traits. Transcriptomics revealed differentially expressed genes (DEGs) in muscle tissue associated with oxidative stress (UQCRFS1, UQCR10, CYC1), ion transport (COX5A, COX7C, COX7B), and the immune response (ATG9A, ATG2B, ATG2A, ULK1, ULK2, CFI, CFH). Metabolomics identified increased non-volatile flavors (e.g., glycine, proline) and collagen-related compounds. Integrated analysis highlighted the upregulation of GSR and GGT, and the downregulation of CHDH and GBSA, potentially driving glycine accumulation. These findings suggest that SA stress enhances antioxidant capacity, activates immune pathways, and modulates ion transport, enabling adaptation while improving meat quality. This study elucidates molecular mechanisms of fish acclimation to SA environments, providing insights for sustainable aquaculture development and breeding of stress-tolerant species in SA regions. Full article

Mercury (Hg) pollution has led to a serious decline in crop yields. Methyl jasmonate (MJ), as a plant hormone, regulates plant responses to heavy metal stress. Nonetheless, the pathways by which MJ modulates Hg tolerance in plants are still not well elucidated. Our study aimed to elucidate the positive impacts of MJ in alleviating Hg-induced toxicity in maize (Zea mays L.) seedlings using an integrated approach combining physiological assessments and transcriptomic analysis. The findings indicated that exogenous MJ mitigated Hg-induced inhibition of photosynthetic performance by up-regulating photosynthesis-related and light-harvesting-related genes and increasing chlorophyll content. Under Hg stress, MJ enhances proline accumulation in maize seedlings by up-regulating essential genes in the proline biosynthesis pathway and down-regulating critical genes in the proline degradation pathway. MJ also elevates the expression of key enzymes involved in phenylpropanoid biosynthesis in maize seedlings, decreases malondialdehyde (MDA) content, and enhances root vitality. In addition, MJ may exert a detoxification effect on maize seedlings under Hg stress by regulating the expression of various genes linked to basic nutrient transport proteins, as well as those involved in the transport, influx, and distribution of metal ions. These findings indicate that MJ is essential for enhancing plant tolerance to Hg stress, thereby establishing a theoretical framework for the advancement and utilization of environmentally friendly agricultural methods involving plant hormones. Full article

6-PPD quinone (6-PPDQ) is widely distributed in environments. In Caenorhabditis elegans, we first examined the effects of 6-PPDQ on glutamate synthesis and receptor function by analyzing glutamate content, related gene expression, and phenotypes after RNAi of these genes. Moreover, we performed glutamate treatment after 6-PPDQ exposure to determine the potential pharmacological effects of glutamate against 6-PPDQ toxicity. After exposure, the glutamate content was reduced by 0.1–10 μg/L 6-PPDQ, which was due to decreased expression of W07E1.1, glna-1/2/3, and alh-6 governing glutamate synthesis from α-ketoglutarate, glutamine, and proline. RNAi of W07E1.1, glna-1/2/3, and alh-6 decreased glutamate content in 6-PPDQ-exposed nematodes, and caused susceptibility to 6-PPDQ toxicity. Among glutamate transporter genes, glt-1 expression was decreased by 0.1–10 μg/L 6-PPDQ. Moreover, 0.1–10 μg/L 6-PPDQ decreased glutamate receptor genes (glr-1, glr-2, and glr-4), and their expression was decreased by RNAi of W07E1.1, glna-1/2/3, alh-6, and glt-1. RNAi of these receptor genes resulted in susceptibility to 6-PPDQ toxicity, and daf-7, jnk-1, and dbl-1 were identified as targets of neuronal glr-1, glr-2, and glr-4. Furthermore, 5 mM glutamate suppressed 6-PPDQ toxicity and increased expression of glr-1, glr-2, and glr-4. Our results demonstrated the risk of 6-PPDQ exposure in disrupting glutamate synthesis and affecting function of glutamate receptors, which was related to 6-PPDQ toxicity induction. Full article

Dihydroartemisinin (DHA) is a bioactive phytopharmaceutical with diverse pharmacological potential, predominantly because of its established antiplasmodial efficacy. Here, we investigated the effects of DHA on metabolic homeostasis in Madin-Darby bovine kidney cells in the context of dose-specific adaptation of metabolism and regulation of biochemistry pathway changes. According to our findings, extensive changes in metabolism were revealed by PCA, accounting for a variability of 59.4% to distinguish contrasting metabolic signatures from normal cells. Metabolomic characterization demonstrated 67 constituting metabolites of baseline cellular processes, while 32 and 44 metabolites have demonstrated differential abundance in low- and high-dose treatments, respectively. Impaired metabolism of glycerophospholipid, amino acid, and nucleotide biosynthesis was reported with implications such as regulation of membrane reorganization, nitrogen metabolism, and cellular bioenergetics. Bioindicators of high-volume lysophosphatidylcholine (18:0) and choline phosphate revealed a lipid homeostatic change, in addition to imbalances in glutamic acid and proline levels. Pathway regulation further modulated ABC transporters and arachidonic acid signaling as implications of systemic phytopharmaceutical-modulated reorganization of metabolism. Hence, the study gives mechanistic insight into DHA-initiated modulation of cellular metabolism in MDBK cells, elucidating its status as a cellular metabolism regulator. Findings confirm the potential of DHA as a phytopharmaceutical in modulating diseases of metabolism, further solidifying its relevance in evidence-based traditional herbal remedies and natural compound therapeutics. Full article

The enrichment of cadmium (Cd) is an important factor threatening crop growth and food safety. However, it is unclear whether exogenous selenium (Se) can simultaneously achieve Cd reduction and promote the growth of peppers. This study used Yuefeng 750 and Hongtianhu 101 as materials and investigated the interaction effects of different Se-Cd concentrations (Cd = 2 and 5 μM; Se = 0, 0.5, and 2 μM) on the uptake and transport of Cd and Se, resistance physiology, and growth and development of pepper seedlings in a hydroponic experiment. The organ Cd content was significantly increased in pepper seedlings, inhibiting their growth and aggravating their physiological stress under Cd application. However, the growth and photosynthetic capacity of peppers were promoted after Se application under Cd stress. The superoxide anion (O₂⁻), hydrogen peroxide (H₂O₂), malondialdehyde (MDA), and abscisic acid (ABA) contents and indole-3-acetic acid oxidase (IAAO) activity in the leaves showed a significantly progressive decline, while the proline (Pro), ascorbic acid (ASA), and trans zeatin riboside (ZR) contents showed a significant rising trend. Thus, the growth, development, and dry matter accumulation of peppers were enhanced by reducing Cd stress. Meanwhile, the application of exogenous Se significantly improved the accumulation of Se in seedlings. In addition, compared to Hongtianhu 101, the Yuefeng 750 cultivars had a greater Cd and Se enrichment capacity. The cultivation of Cd-excluding cultivars combined with exogenous Se addition can be used as a recommended solution to reduce Cd toxicity and achieve Cd reduction and Se enrichment in peppers under Cd pollution. Full article

Soil salinity is a major constraint on crop cultivation, affecting millions of hectares of land and increasing drastically worldwide. Identifying sources of tolerance within the crops and their wild relatives is imperative. Recently, Solanum dasyphyllum L. has been identified as source of tolerance to drought for eggplant (S. melongena L.). In this article, the potential use of S. dasyphyllum as a source of tolerance to salinity is investigated through the characterization of young plants’ performance under three salt stress treatments, well water (control), as well as 200 mM and 400 mM NaCl. Biometric parameters such as leaf and radicular biomass, plant height, root length, and biochemical parameters—such as photosynthetic pigments, main ions accumulation, proline, total soluble sugars, malondialdehyde, total phenolics, flavonoids, and antioxidant enzymes’ activity—were quantified. The results showed a certain reduction in leaf and stem plant growth up to 60% in response to extreme salinity, while root biomass was maintained under mid-salt stress. Salt stress caused toxic ions to accumulate in plant organs, up to 1600 mmol g⁻¹ dry weight Na⁺ and a 2250 mmol g⁻¹ dry weight Cl⁻ in leaves under extreme salinity exposure. However, S. dasyphyllum maintained K⁺ levels at around 450 mmol g⁻¹ in leaves and roots and 750 mmol g⁻¹ in stems, indicating a mechanism related to ion transport to cope with ion toxicity. The biochemical response indicated osmotic adjustments and antioxidant activity without the need of activating antioxidant enzymes. S. dasyphyllum has proved to be a valuable genetic tool for new eggplant breeding programs regarding salt stress, with somewhat improved performance regarding biometric parameters and ion transport. Full article

Heavy metal pollution and soil salinization harm human health and the environment. Phytoremediation is a widely accepted soil decontamination method, with woody plants being particularly effective due to their large biomass and extensive root systems. In this study, we identified and cloned PsnMLP328 from Populus simonii × P. nigra and demonstrated its role in mitigating salt and cadmium stress. PsnMLP328 expression was up-regulated under both stress conditions, and its overexpression in tobacco enhanced resistance to these stresses, albeit through distinct mechanisms. Transgenic plants exhibited increased Cd²⁺ uptake and a higher biomass, alleviating Cd²⁺-induced growth inhibition. Additionally, PsnMLP328 boosted proline content, chlorophyll levels, and antioxidative enzyme activities (POD, SOD) under Cd²⁺ stress, likely by protecting cells from oxidative damage. Expression analysis revealed that PsnMLP328 down-regulated the cadmium transporter Nramp2 while up-regulating YSL2 (another cadmium transporter) and potassium channels (AKT1 and AKT2/3), suggesting its role in modulating K⁺ and Cd²⁺ homeostasis. These findings indicate that PsnMLP328 enhances tobacco resistance to salt and cadmium stress, particularly the latter. This study is the first to elucidate the function of poplar MLP family genes under salt and cadmium stress, advancing our understanding of MLP gene roles in heavy metal stress and offering new insights for remediating salinized and heavy metal-contaminated soils. Full article

Low temperature (LT) and low illumination (LI) are common meteorological factors posing a great risk to plants. This study aimed to clarify and quantify the effects of LT, LI, and their combined stress (LTLI) on the photosynthetic physiological processes of strawberry plants during the flowering stage. The results indicated that LI stress increased Chla and b levels in strawberry plants while lowering the chlorophyll a/b ratio. In contrast, LT and LTLI stress reduced chlorophyll content. All stress conditions (LT, LI, and LTLI) decreased net photosynthetic rate, stomatal conductance, transpiration rate, the maximum photochemical efficiency of photosystem II, photosynthetic electron transport rate, and actual photochemical quantum efficiency. These stresses also raised intercellular carbon dioxide concentration, non-photochemical quenching coefficient, and levels of malondialdehyde, proline, hydrogen peroxide, and peroxide ion content. Moreover, LI stress treatment boosted the activity of superoxide dismutase, peroxidase, and catalase, while LT and LTLI stress initially raised the activity of these enzymes before it eventually declined. Importantly, the previously mentioned photosynthetic physiological parameters showed notable changes under the combined stress conditions. Ultimately, the TOPSIS model was used to quantitatively evaluate the impact levels of different stressors and treatment durations on the photosynthetic system of strawberry plants. In conclusion, the synergistic impact of LT and LI results in a reduction in photosynthetic rate and photosystem II activity, a disruption in the equilibrium of the antioxidant system, and an intensification of photoinhibition, ultimately leading to diminished photosynthetic efficiency in plants. Full article

Salt stress poses a major threat to plant growth, and breeding for salt-tolerant varieties is not always successful to ameliorate this threat. In the present experiment, the effect of T. asperellum 22043 inoculation on the growth of salt-stressed tomatoes and the mechanisms by which it improves salt tolerance were investigated. It was observed that tomato plants treated with T. asperellum 22043 spore suspension under salt tress (50 and 100 mM NaCl) consistently exhibited higher seeds germination, seedling survival rate, plant height, and chlorophyll content, but lower malondialdehyde and proline contents than the plants treated without the Trichoderma. T. asperellum 22043 effectively improved the stress resistance of tomato through regulating the transcriptional levels of reactive oxygen species (ROS) scavenging enzyme gene expression to modulate the activity of ROS scavenging enzymes and the expression of the genes related to transporter and aquaporin to maintain the balance of cell Na⁺. In conclusion, T. asperellum 22043 can enhance tomato seedlings’ salt tolerance by activating the antioxidant system and regulating the expression of stress-resistant genes. Full article

Salt stress, as a significant adverse consequence of global climate change, severely restricts the yield and quality of watermelon. In this study, salt-tolerant cultivar T23 and salt-sensitive cultivar B2 were subjected to a 200 mM NaCl treatment (0 h, 6 h, 24 h, 48 h, and 168 h) at the three-leaf stage, and the adaptation mechanisms of the watermelon roots to salt stress were systematically investigated at the phenotypic, physiological, and gene transcription levels. Phenotypic observations revealed that salt stress inhibited seedling growth, caused leaf curling, and induced root yellowing, with the damage being significantly more severe in B2 than in T23. Compared with B2, the activities of superoxide dismutase (SOD) were increased by −7.13%, 169.15%, 34.95%, 84.87%, and 39.87% under NaCl treatment at 0 h, 6 h, 24 h, 48 h, and 168 h, respectively. Compared to the 0 h NaCl treatment, the proline content in B2 increased by 4.25%, 14.39%, and 110.00% at 24 h, 48 h, and 168 h of NaCl treatment, respectively, while T23 showed increases of 93.74%, 177.55%, and 380.56% at the corresponding time points. The provided physiological data demonstrate that T23 exhibits superior antioxidant and osmoregulatory abilities relative to B2. The transcriptome analysis identified differentially expressed genes (DEGs) between the two cultivars under salt stress, with T23 showing the highest number of DEGs at 6 h, while B2 exhibited a significant increase in DEGs at 168 h. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis revealed that metabolic pathways such as plant hormone signal transduction, terpenoid biosynthesis, mitogen-activated protein kinase (MAPK) signaling pathways, transporter activity, and transcription regulator activity play important roles in the salt stress response. Furthermore, yeast overexpression experiments preliminarily validated the critical roles of the tonoplast dicarboxylate transporter gene ClCG01G010280 and the NAC transcription factor gene ClCG05G024110 in salt stress tolerance. This study provides new molecular insights into the salt tolerance mechanism of watermelon and offers potential genetic resources for breeding salt-tolerant varieties. Full article