Search Results (21,015)

Plant immunity research is being reshaped by integrative multi-omics approaches that connect transcriptomic, proteomic, and interactomic data to build systems-level views of plant–pathogen interactions. This review outlines the scope and methodological landscape of these approaches, with particular emphasis on how transcriptomic and proteomic insights converge through network-based analyses to elucidate defense regulation. Transcriptomics captures infection-induced transcriptional reprogramming, while proteomics reveals protein abundance changes, post-translational modifications, and signaling dynamics essential for immune activation. Network-driven computational frameworks including iOmicsPASS, WGCNA, and DIABLO enable the identification of regulatory modules, hub genes, and concordant or discordant molecular patterns that structure plant defense responses. Interactomic techniques such as yeast two-hybrid screening and affinity purification–mass spectrometry further map host–pathogen protein–protein interactions, highlighting key immune nodes such as receptor-like kinases, R proteins, and effector-targeted complexes. Recent advances in machine learning and gene regulatory network modeling enhance the predictive interpretation of transcription–translation relationships, especially under combined or fluctuating stress conditions. By synthesizing these developments, this review clarifies how integrative multi-omics and network-based frameworks deepen understanding of the architecture and coordination of plant immune networks and support the identification of molecular targets for engineering durable pathogen resistance. Full article

Global warming poses a threat to food security, particularly for essential crops like cowpea, which exhibits sensitivity to heat stress. This study aimed to evaluate the morpho-agronomic diversity of cowpea genotypes under different daily temperature regimes. The experiment was conducted in growth chambers, and biometric and productive traits were measured to quantify genetic divergence using Mahalanobis distance and UPGMA clustering. Temperature increases markedly altered trait expression. Under the 20–26–33 °C regime, 100-grain weight, leaf dry weight, pod weight, and stem dry weight accounted for 54.44% of the total variation. Under the higher temperature regime (24.8–30.8–37.8 °C), number of pods, plant height, stem fresh weight, and leaf dry weight explained 67.27% of the diversity, evidencing the impact of heat stress on vegetative and productive traits. Cluster analysis identified five distinct groups, confirming genetic variability and temperature-dependent dissimilarity patterns. Genotypes Bico de Ouro 17-53, Bico de Ouro 17-33 and BRS Tumucumaque maintained higher grain number and grain weight under elevated temperatures, whereas others showed yield reductions of up to 65%. These findings demonstrate exploitable genetic variability for heat tolerance in cowpea and support the use of morpho-agronomic traits as effective criteria for selecting genotypes adapted to warmer environments. Full article

Objectives: Kadsura coccinea fruit is a traditional medicinal plant rich in dibenzocyclooctadiene lignans, with established hepatoprotective effects. Binankadsurin A (BKA), a dibenzocyclooctadiene lignan isolated from the K. coccinea fruits. This study aims to evaluate its hepatoprotective efficacy in an acetaminophen (APAP)-induced mouse liver injury model. Methods: The structure of BKA was elucidated by HR-ESI-MS, NMR, single-crystal X-ray diffraction and comparison of their data with those of the literature. Mice were randomly divided into five groups: Control, APAP (400 mg/kg, single intraperitoneal injection), APAP + bicyclol (50 mg/kg), APAP + low-dose BKA (50 mg/kg), and APAP + high-dose BKA (100 mg/kg). Untargeted metabolomics, immunohistochemistry, Western blot analysis, and molecular docking were performed. Results: BKA was determined as a dibenzocyclooctadiene lignan, and the single-crystal structure is reported for the first time. The untargeted metabolomics revealed that metabolites and pathways are closely associated with oxidative stress. In vivo studies showed that pretreatment with BKA can mitigate liver injury. BKA reduced serum levels of aspartate aminotransferase (AST) and alanine aminotransferase (ALT) and stored hepatic glutathione (GSH) levels. Immunohistochemical analysis results also showed that CYP2E1 expression in the mouse liver could be improved through BKA pretreatment. Furthermore, Western blot analysis presented that BKA could increase the protein expression of Nrf2, HO-1, and NQO-1. Additionally, molecular docking indicated that BKA directly blocks the binding site of Nrf2 with Keap1. Conclusions: BKA reduces APAP-induced acute liver damage by inhibiting oxidative stress by activating the Keap1/Nrf2/HO-1 signaling pathway, providing a theoretical basis for BKA as a potential therapeutic agent for APAP-induced liver injury. Full article

Plant growth-promoting (PGP) bacteria are beneficial microbes that can help plants mitigate various biotic and abiotic stresses through different PGP functions. Flavins (FLs) are involved in flavoprotein-mediated reactions essential for plant metabolism and could act as PGP molecules. The aim of this study was to isolate and characterize potential FLs secreting bacteria from apple (Malus domestica [Suckow] Borkh) roots based on their fluorescence and to evaluate their PGP properties, including FLs secretion. A total of 26 bacteria with increased fluorescence in liquid culture were isolated from the apple roots. Based on 16S rRNA sequencing analysis, 11 genetically different strains mostly from Burkholderia and Rhizobia spp. were identified. All isolates secreted considerable amounts of riboflavin. In vitro plant assays showed that under nitrogen (N) limitation, inoculated alfalfa (Medicago sativa) plants yielded at least 25% more dry mass than non-inoculated plants, and inoculation with AK7 and FL112 enriched plant tissue N content compared to non-inoculated plants. This improved N acquisition was not linked to symbiotic N fixation. Additionally, the isolates exhibited some other PGP properties. However, no specific PGP functions were linked to improved plant N acquisition but could potentially be linked to the FLs secretion. For future investigation, the mechanisms underlying improved plant N uptake should be assessed to gain a more in-depth understanding. Full article

Endophytic fungi enhance plant growth and stress resilience, yet their molecular roles in the roots of the endangered tree Phoebe bournei remain unclear. A comparative RNA-seq analysis was performed on root transcriptomes from wild, endophyte-colonized adult trees (OT) and axenically grown seedlings (ST). Unmapped reads were analyzed against the NCBI nucleotide (NT) database using BLASTN (v2.17.0), revealing Rhizophagus irregularis as the predominant endophytic fungus. Differential expression analysis identified 5891 DEGs, which were significantly enriched in pathways related to plant–pathogen interactions, phenylpropanoid biosynthesis, plant hormone signal transduction, and MAPK signaling. Key upregulated genes included PbMPK3, PbCML42, PbCML41.2, and PbGSTU28, suggesting enhanced ROS scavenging, calcium signaling, and defense activation. RT-qPCR validation confirmed the transcriptomic trends for selected genes. Our findings reveal that root endophytic fungi modulate a coordinated network involving immune priming, phytohormone regulation, and redox homeostasis, thereby supporting root development and enhancing resistance to biotic and abiotic stresses in P. bournei. This study provides foundational molecular insights into beneficial plant–endophyte interactions and identifies candidate genes that are valuable for the conservation and breeding of this threatened species. Full article

Heavy metal contamination poses critical challenges for the cultivation of medicinal plants. This study explores cadmium (Cd)-induced morpho-physiological and metabolic responses in Salvia officinalis (So) and the rare endemic Salvia ceratophylloides (Sc). Plants were exposed to cadmium contamination corresponding to 5 and 10 mg kg⁻¹ Cd (100% and 200% of the Italian regulatory limit) and assessed through gas exchange, leaf anatomy, mineral profiling, polyphenol composition, antioxidant activity, and a preliminary ecotoxicological evaluation using the Artemia salina lethality bioassay. Cd predominantly accumulated in roots, reflecting a partial exclusion strategy, and caused alterations in leaf traits, water relations, and nutrient balance. While total polyphenols generally declined, species-specific responses emerged: S. ceratophylloides increased caffeic acid derivatives, whereas S. officinalis accumulated caffeic acid, lithospermic acid A, quercetin 3-O-glucuronide, and apigenin-O-pentoside at the highest Cd exposure. Polyphenol shifts were strongly associated with antioxidant capacity. Despite higher growth sensitivity, S. ceratophylloides extracts exhibited no toxicity in the A. salina assay, indicating effective metal sequestration and low bioavailability, whereas S. officinalis extracts induced moderate to high toxicity. These findings reveal contrasting Cd tolerance and detoxification strategies, highlighting the potential of integrating plant stress physiology with ecotoxicological assessment and phytostabilization approaches to safely cultivate medicinal species on contaminated soils. Full article

Sustainable agriculture increasingly relies on biostimulants like protein hydrolysates (PHs) to enhance crop resilience. This study characterized and compared three plant-derived PHs (PH1, PH2, and PH3) from the Malvaceae, Brassicaceae, and Fabaceae families, respectively, under optimal (40 µM Fe³⁺-EDTA) and iron (Fe)-deficient (4 µM Fe³⁺-EDTA) conditions. Initial assays demonstrated that the PHs possessed significant antioxidant capacity and influenced biological activity: PH2 and PH3 promoted pollen germination, while PH1 exhibited a weaker stimulatory effect. In vivo experiments on tomato plants revealed that PH application effectively modulated root architecture and biomass accumulation. Moreover, PH2 and PH3 significantly mitigated Fe deficiency’s impact, by maintaining biomass and preventing chlorosis. Interestingly, while Fe deficiency typically triggers massive root Fe³⁺-chelate reductase activity, PH treatments, particularly PH2, significantly down-regulated this response. This suggests that PHs may improve internal Fe use efficiency or facilitate alternative uptake pathways. Overall, these findings establish a link between the intrinsic bioactive properties of PHs and their biostimulant action, highlighting their potential as innovative tools for improving nutrient use efficiency and crop resilience in sustainable farming systems. Full article

Late embryogenesis abundant (LEA) proteins play an essential role in plant growth under various abiotic stresses. In this study, we identified 23 RcLEA genes in Rosa chinensis ‘Old Blush’ and subsequently grouped them into eight clades according to phylogenetic relationships and conserved domain features by bioinformatics methods. And conserved protein motifs and gene structure are also analyzed. The cis-regulatory elements of RcLEA promoter are enriched with cis-regulatory elements relevant to abiotic stress adaptation. Comparative transcriptomics between two species revealed tissue-specific and cold-induced expression differences, highlighting distinct functional roles of LEA genes in growth and abiotic stress tolerance between Rosa chinensis ‘Old Blush’ and Rosa beggeriana. Furthermore, Quantitative Real-Time PCR (qRT-PCR validation confirmed divergent cold-responsive expression profiles of LEA genes in R. chinensis ‘Old Blush’ compared with the highly cold-tolerant R. beggeriana in four LEA homologous genes. These findings indicated that LEA acts as a cold-response gene in roses and provide foundation to breed cold-tolerant varieties of roses. Full article

Drought stress severely limits wheat growth, development and yield. Endophytic fungi play a crucial role in plant growth and drought resistance. In agricultural production, they hold significant application potential as biocontrol agents capable of mitigating drought-induced damage. However, the mechanisms underlying changes in endophytic fungal community structure under drought stress remain unclear. Our study employed amplicon sequencing to investigate the structure of endophytic fungal communities in wheat roots under different water treatments, comparing structural and functional changes between different treatments. Results revealed that drought stress led to the greatest accumulation of relative abundance in the phylum Ascomycota (86.4%). At the genus level, Stachybotrys (increase 994.2%), Fusarium (increase 94.6%) and Aspergillus (increase 295.6%) showed the most significant increases in relative abundance. Co-occurrence network and Sankey diagram analysis revealed that wheat roots formed a drought-specific endophytic fungal community centered around Stachybotrys, Fusarium and Aspergillus, which indirectly enhanced crop drought tolerance. Our findings provide a theoretical foundation for future agricultural strategies to improve crop drought resistance through precise regulation of microbial communities. Full article

Alternative splicing (AS) is a crucial post-transcriptional regulatory mechanism in eukaryotes. Plants can cope with complex environmental changes through AS. In this paper, we found that AS plays an important role in plant responses to biotic and abiotic stresses. First, we note that under biotic stress (e.g., disease, insects), AS regulates the expression of immune-related genes and produces splice variants with different functions to regulate plant disease resistance. Second, under abiotic stress (e.g., drought, cold, heat, salt), plants generate functional splice variants via different AS events and change the original function of the gene. At the same time, we also found that splicing factors and regulatory elements, such as serine/arginine-rich proteins associated with AS, are also involved in the regulation of the expression of related resistance genes to improve plant stress resistance. Therefore, this review summarizes the recent progress on the main types of AS events, the functions of related splicing factors, and the action routes and regulatory mechanisms of splice variants. We hope to provide a reference for further understanding of the stress response mechanism of plant AS and provide a theoretical basis for the breeding of resistant varieties. Full article

This study tackles the stabilization and delivery challenges of oxidation-prone carrot oil by engineering tailored Zein-OSA starch hybrid complexes. The influence of complex mass ratios (1:2, 1:1, 2:1) on key structural, colloidal, and functional properties was meticulously evaluated. The complexes were analyzed through spectroscopy, thermal methods, and microscopy. Derived emulsions were assessed for stability under environmental stresses (pH, salts, storage), alongside their rheological behavior and aroma retention. The 1:1 complex emerged with optimal molecular compatibility, thermal stability, and barrier properties. In emulsions, the 1:2 formulation provided the most uniform droplets and superior salt tolerance, while the 1:1 ratio yielded the best pH stability. All emulsions were shear-thinning. Microencapsulation effectively converted the emulsion into a stable, free-flowing powder. This work demonstrates a rational approach to designing robust plant-based delivery systems for protecting and improving the functionality of sensitive lipophilic ingredients in practical applications. Full article

The excessive use of chemical fertilizers raised concerns regarding environmental sustainability and soil degradation, prompting increasing interest in biofertilizers as eco-friendly alternatives. Among these, a compound that is effective in stimulating root and plant growth is indole-3-acetic acid (IAA). In our study, we evaluated IAA production by the halotolerant bacterium Vreelandella titanicae under different and varying nutritional conditions, such as tryptophan availability, temperature, pH, salinity, etc. The bacterium showed significant IAA production under a broad range of conditions and a dependence on the presence of tryptophan for IAA biosynthesis. High salinity (1.0 M NaCl), slightly alkaline pH (8.0–9.0), and temperatures of 34 °C increased IAA production, while optimal growth occurred in the absence of NaCl at a range of temperatures of 25–28 °C, suggesting a stress-responsive regulation of its biosynthesis. Easily metabolizable carbon sources, such as glucose and mannitol, enhanced IAA yield again, whereas additions of 1.0 g L⁻¹ NH₄NO₃ and KH₂PO₄ in the basal medium, poor in these salts, inhibited both the growth of the bacterium and IAA production. Notably, V. titanicae produced relevant amounts of IAA in seawater (24.57 ± 11.28 μg⋅mL⁻¹) when used as growth medium and dairy whey (15.68 ± 2.42 μg⋅mL⁻¹), highlighting its suitability for low-cost and circular bioprocessing strategies. In conclusion, V. titanicae is a promising Plant Growth-Promoting Rhizobacterium (PGPR) candidate for sustainable IAA production and potential application in saline or marginal agricultural soils. Its ability to synthesize IAA in different growth media could allow its exploitation in environmentally friendly bioprocesses. Full article

Argania spinosa L. Skeels is an ecological pillar of the arid zones of South-West Morocco, currently threatened by the drastic climate change. This study investigates the effect of the combined application of compost (C) and subsurface water retention technology (SWRT) on field performances of one-(1Y) and two-year-old (2Y) argan seedlings. A randomized field trial was performed with four treatments: Control, C, SWRT, and C + SWRT. We evaluated soil properties, growth, and physiology, alongside biochemical parameters including stress markers, compatible solutes, antioxidant enzyme activities, and secondary metabolites. The results reveal the significant effect of C and/or SWRT on argan seedlings performances, particularly in 1Y subjects. The C + SWRT strongly stimulated stem elongation (246% vs. 163%), stomatal conductance (75% vs. 99%), photosynthetic efficiency (18% vs. 11%), and chlorophyll a content (80% vs. 65%) in 1Y and 2Y seedlings, respectively, compared to their corresponding controls. Under the same treatment, malondialdehyde levels were significantly reduced by 37% in 1Y seedlings and 23% in 2Y seedlings. In addition, catalase activity and soluble sugar, protein, and polyphenol content increased by 38, 43, 26, and 21%, respectively, in the younger seedlings and by 53, 51, 18, and 19%, respectively, in the elder seedlings. In terms of soil health, C + SWRT significantly enhanced total organic carbon and matter, available phosphorus, and reduced electrical conductivity. In summary, the C + SWRT application significantly improved argan plant performances, with a particularly marked effect on 1Y seedlings, which makes this combination an alternative solution to enhance the resilience of the argan tree in the era of climate change and promote the success of the reforestation program. Full article

Nanotechnology is becoming a key tool in plant biotechnology, enabling nanoparticles (NPs) to deliver biomolecules with high precision and to enhance plant and tissue resilience under stress. However, the literature remains fragmented across genetic delivery, in vitro regeneration, stress mitigation, and germplasm cryopreservation, and it still lacks standardized, comparable protocols and robust long-term safety assessments—particularly for NP use in cryogenic workflows. This review critically integrates recent advances in NP-enabled (i) genetic engineering and transformation, (ii) tissue culture and regeneration, (iii) nanofertilization and abiotic stress mitigation, and (iv) cryopreservation of plant germplasm. Across these areas, the most consistent findings indicate that NPs can facilitate targeted transport of DNA, RNA, proteins, and regulatory complexes; modulate oxidative and osmotic stress responses; and improve regeneration performance in recalcitrant species. In cryopreservation, selected nanomaterials act as multifunctional cryoprotective adjuvants by suppressing oxidative injury, stabilizing cellular membranes, and improving post-thaw viability and regrowth of sensitive tissues. At the same time, NP outcomes are highly context-dependent, with efficacy governed by dose, size, and surface chemistry; formulation; plant genotype; and interactions with culture media or vitrification solutions. Evidence of potential phytotoxicity, persistence, and biosafety risks highlights the need for harmonized reporting, mechanistic studies on NP–cell interfaces, and evaluation of environmental fate. Expected outcomes of this review include a consolidated framework linking NP properties to biological endpoints, identification of design principles for application-specific NP selection, and a set of research priorities to accelerate the safe and reproducible translation of nanotechnology into sustainable plant biotechnology and long-term germplasm preservation. Full article

Sustained abiotic stress severely impairs fruit crop growth and development. As plants’ primary environmental sensing organ, fruit tree roots experience disrupted morphogenesis and physiological functions, reducing yield, lowering fruit quality, and threatening orchard ecosystem stability. Abiotic stress is diverse: water deficit from drought, extreme temperature fluctuations, and salinization-induced ion imbalance, heavy metal accumulation, or nutrient disorders. Its complexity requires synergistic and crosstalk regulation of multiple root-specific signaling modules and pathways in root stress perception and transduction. When responding to stress, roots activate hormone, reactive oxygen species (ROS), and calcium ion (Ca²⁺) signaling. These pathways mediate early stress recognition and regulate downstream gene expression and physiological metabolic reprogramming via transcription factors (TFs) and other regulators, determining stress tolerance and adaptability. Using typical abiotic stresses as models, this review outlines the composition, activation mechanisms, specificity, and synergistic effects of root-specific signaling modules/pathways, along with modern biotechnologies for decoding these modules and current research limitations, aiming to reveal the root signal network’s integration mode. Full article