Search Results (139)

Genomic islands (GIs) including integrative and conjugative elements (ICEs), prophages, and integrative plasmids are central drivers of horizontal gene transfer in bacterial plant pathogens. These elements often carry cargo genes encoding virulence factors, antibiotic and metal resistance determinants, and metabolic functions that enhance environmental adaptability. In plant-pathogenic species such as Pseudomonas syringae, GIs contribute to host specificity, immune evasion, and the emergence of novel pathogenic variants. ICEclc and its homologs represent integrative and mobilizable elements whose tightly regulated excision and transfer are driven by a specialized transcriptional cascade, while ICEs in P. syringae highlight the ecological impact of cargo genes on pathogen virulence and fitness. Pathogenicity islands further modulate virulence gene expression in response to in planta stimuli. Beyond P. syringae, GIs in genera such as Erwinia, Pectobacterium, and Ralstonia underpin critical traits like toxin biosynthesis, secretion system acquisition, and topoisomerase-mediated stability. Leveraging high-throughput genomics and structural biology will be essential to dissect GI regulation and develop targeted interventions to curb disease spread. This review synthesizes the current understanding of GIs in plant-pathogenic gammaproteobacteria and outlines future research priorities for translating mechanistic insights into sustainable disease control strategies. Full article

The worldwide agriculture industry is facing increasing problems due to rapid population increase and increasingly unfavorable weather patterns. In order to reach the projected food production targets, which are essential for guaranteeing global food security, innovative and sustainable agricultural methods must be adopted. Conventional approaches, including traditional breeding procedures, often cannot handle the complex and simultaneous effects of biotic pressures such as pest infestations, disease attacks, and nutritional imbalances, as well as abiotic stresses including heat, salt, drought, and heavy metal toxicity. Applying phytohormonal approaches, particularly those involving hormonal crosstalk, presents a viable way to increase crop resilience in this context. Abscisic acid (ABA), gibberellins (GAs), auxin, cytokinins, salicylic acid (SA), jasmonic acid (JA), ethylene, and GA are among the plant hormones that control plant stress responses. In order to precisely respond to a range of environmental stimuli, these hormones allow plants to control gene expression, signal transduction, and physiological adaptation through intricate networks of antagonistic and constructive interactions. This review focuses on how the principal hormonal signaling pathways (in particular, ABA-ET, ABA-JA, JA-SA, and ABA-auxin) intricately interact and how they affect the plant stress response. For example, ABA-driven drought tolerance controls immunological responses and stomatal behavior through antagonistic interactions with ET and SA, while using SnRK2 kinases to activate genes that react to stress. Similarly, the transcription factor MYC2 is an essential node in ABA–JA crosstalk and mediates the integration of defense and drought signals. Plants’ complex hormonal crosstalk networks are an example of a precisely calibrated regulatory system that strikes a balance between growth and abiotic stress adaptation. ABA, JA, SA, ethylene, auxin, cytokinin, GA, and BR are examples of central nodes that interact dynamically and context-specifically to modify signal transduction, rewire gene expression, and change physiological outcomes. To engineer stress-resilient crops in the face of shifting environmental challenges, a systems-level view of these pathways is provided by a combination of enrichment analyses and STRING-based interaction mapping. These hormonal interactions are directly related to the United Nations Sustainable Development Goals (SDGs), particularly SDGs 2 (Zero Hunger), 12 (Responsible Consumption and Production), and 13 (Climate Action). This review emphasizes the potential of biotechnologies to use hormone signaling to improve agricultural performance and sustainability by uncovering the molecular foundations of hormonal crosstalk. Increasing our understanding of these pathways presents a strategic opportunity to increase crop resilience, reduce environmental degradation, and secure food systems in the face of increasing climate unpredictability. Full article

Urbanization poses mental health risks for urban dwellers, whereas natural environments offer mental health benefits by providing restorative experiences through visual stimuli. While urban waterfront spaces are recognized for their mental restorative potential, the specific environmental features and individual visual behaviors that drive these benefits remain inadequately understood. Grounded in restorative environments theory, this study investigates how these factors jointly influence restoration. Employing a controlled laboratory experiment, subjects viewed real-life images of nine representative spatial locations from the waterfront space of Guangzhou Long Bund. Data collected during the multimodal experiments included subjective scales data (SRRS), physiological measurement data (SCR; LF/HF), and eye-tracking data. Key findings revealed the following: (1) The element visibility rate and visual characteristics of plant and building elements significantly influence restorative benefits. (2) Spatial configuration attributes (degree of enclosure, spatial hierarchy, and depth perception) regulate restorative benefits. (3) Visual behavior patterns (attributes of fixation points, fixation duration, and moderate dispersion of fixations) are significantly associated with restoration benefits. These findings advance the understanding of the mechanisms linking environmental stimuli, visual behavior, and psychological restorative benefits. They translate into evidence-based design principles for urban waterfront spaces. This study provides a refined perspective and empirical foundation for enhancing the restorative benefits of urban waterfront spaces through design. Full article

Hydrogen sulfide (H₂S), once regarded solely as a highly toxic gas, is now recognized as a crucial signaling molecule in plants, bacteria, and mammals. In humans, H₂S signaling plays a role in numerous physiological and pathological processes, including vasodilation, neuromodulation, and cytoprotection. To exploit its biological functions and therapeutic potential, a wide range of H₂S-releasing compounds, known as H₂S donors, have been developed. These donors are designed to release H₂S under physiological conditions in a controlled manner. Among them, self-reporting H₂S donors are seen as a particularly innovative class, combining therapeutic delivery with real-time fluorescence-based detection. This dual functionality enables spatiotemporal monitoring of H₂S release in biological environments, eliminating the need for additional sensors or probes that could disrupt cellular homeostasis. This review summarizes recent advancements in self-reporting H₂S donor systems, organizing them based on their activation triggers, such as specific bioanalytes, enzymes, or external stimuli like light. The discussion covers their design strategies, performance in biological applications, and therapeutic potential. Key challenges are also highlighted, including the need for precise control of H₂S release kinetics, accurate signal quantification, and improved biocompatibility. With continued refinement, self-reporting H₂S donors offer great promise for creating multifunctional platforms that seamlessly integrate diagnostic imaging with therapeutic H₂S delivery. Full article

The AT-hook motif nuclear localized (AHL) gene family encodes transcription factors pivotal in regulating plant growth, development, and responses to abiotic stimuli, including low temperature, salinity, darkness, and drought. In this study, we systematically identified 21 BpAHL genes in birch and characterized their sequence features, evolutionary relationships, and expression dynamics. Phylogenetic analysis classified BpAHLs into two clades (Clade-A and Clade-B) and three types (Type-I, -II, and -III), based on PPC domain and AT-hook motifs. Chromosomal mapping revealed an even distribution across nine chromosomes and one contig, with dispersed duplication events recognized as the major driver of BpAHL family expansion. Tissue-specific expression profiling uncovered striking divergence: Type-I BpAHLs displayed root-predominant expression, whereas Type-II/III BpAHLs were highly expressed in plant flowers and leaves. Notably, Type-II/III BpAHL genes in leaves showed distinct expression patterns in response to cold and heat stresses, while Type-I BpAHLs in roots were down-regulated under salt stress. This study provides a comprehensive phylogenomic and functional analysis of the AHLs in birch, providing insights into their roles in enhancing abiotic stress resilience in forest trees. Full article

Ginger (Zingiber officinale Roscoe), valued both for its medicinal and culinary uses, can be adversely affected by abiotic stresses such as high temperature and drought, which can impact its growth and development. The HSP90 gene family has been recognized as a crucial element for enhancing heat and drought resistance in plants. Nevertheless, no studies have yet reported on the HSP90 gene family in ginger. This study investigates the HSP90 gene family in ginger and its crucial role in the plant’s responses to abiotic stresses. A total of 11 ZoHSP90 members were identified in the ginger genome, and these genes were unevenly distributed across five chromosomes. Bioinformatics analyses revealed that the HSP90 proteins in ginger vary in size, ranging from 306 to 886 amino acids. These proteins are predominantly located in the cytoplasm, endoplasmic reticulum, and mitochondria. Notably, ten conserved motifs were identified, with variations in motif distribution correlating with phylogenetic relationships among the genes. Furthermore, the gene structure analysis indicated differences in exon numbers, which may reflect specialized regulatory mechanisms and functional differentiation among the ZoHSP90 genes. Cis-acting elements within the promoter regions of the ZoHSP90 genes were identified, and their involvement in stress responses and hormonal signaling pathways was revealed. These elements are critical for regulating gene expression patterns in response to environmental stimuli, such as methyl jasmonate, salicylic acid, and abscisic acid. The presence of these elements indicates that ZoHSP90 genes play significant regulatory roles in plant adaptation to environmental changes. Expression profiling of the ZoHSP90 genes under various abiotic stress conditions demonstrated tissue specificity and dynamic regulation. Different ZoHSP90 genes exhibited distinct expression patterns in response to low-temperature, drought, high-temperature, and salt stresses. This suggests that the HSP90 gene family in ginger possesses both conserved functions and species-specific adaptations to optimize stress responses. Overall, this research provides valuable insights into the molecular functions of the HSP90 gene family in ginger and lays the groundwork for future studies aimed at enhancing crop resilience through genetic engineering. The findings contribute to a deeper understanding of plant adaptability to environmental stressors, which is crucial for improving agricultural productivity in the face of climate change. Full article

NAC transcription factors form a plant-specific family essential for growth, development, and stress responses. NTLs, a subfamily of the NAC transcription factor family, belong to the membrane-bound transcription factors (MTFs). These proteins contain transmembrane domains that enable rapid nuclear translocation in response to environmental stimuli, thereby regulating target gene expression. As a major sugar crop, sugar beet is primarily cultivated in arid and semi-arid regions, where drought stress significantly impairs yield and quality, underscoring the urgent need to improve its drought tolerance. This study identified the NTL gene family in sugar beet and analyzed its gene structure, evolutionary relationships, cis-regulatory elements, drought-induced expression patterns, and BvNTL2’s role in drought resistance. The BvNTLs family comprises five members located on five distinct chromosomes. Their promoters harbor cis-regulatory elements related to ABA and drought stress, and their expression is drought-responsive. Under drought stress, BvNTL2 translocates to the nucleus, where its transmembrane domain is cleaved, resulting in its direct nuclear localization. Functional validation in Arabidopsis demonstrated that BvNTL2 overexpression enhances drought tolerance by increasing antioxidant enzyme activities and promoting the expression of ABA-related genes. This study highlights BvNTL2 as a promising candidate gene for the genetic improvement of drought-resistant sugar beet. Full article

Background/Objectives: Cirsium setosum (commonly known as thistle) is a traditional Chinese medicinal plant with significant therapeutic potential, exhibiting hemostatic, antioxidant, and wound-healing properties. Electrospinning offers a versatile platform for fabricating nanoscale scaffolds with tunable functionality, making them ideal for drug delivery and tissue engineering. Methods: In this study, a bioactive extract from thistle was obtained and incorporated into a thermosensitive triblock copolymer (PNNS) and polycaprolactone (PCL) to develop a multifunctional nanofibrous scaffold for enhanced wound healing. The prepared nanofibers were thoroughly characterized using Fourier-transform infrared spectroscopy (FTIR), contact angle measurements, thermogravimetric analysis (TGA), and tensile fracture testing to assess their physicochemical properties. Results: Notably, the inclusion of PNNS imparted temperature-responsive behavior to the scaffold, enabling controlled deformation in response to thermal stimuli—a feature that may facilitate wound contraction and improve scar remodeling. Specifically, the scaffold demonstrated rapid shrinkage at a physiological temperature (38 °C) within minutes while maintaining structural integrity at ambient conditions (20 °C). In vitro studies confirmed the thistle extract’s potent antioxidant activity, while in vivo experiments revealed their effective hemostatic performance in a liver bleeding model when delivered via the composite nanofibers. Thistle extract and skin temperature-responsive contraction reduced the inflammatory outbreak at the wound site and promoted collagen deposition, resulting in an ideal wound-healing rate of above 95% within 14 days. Conclusions: The integrated strategy that combines mechanical signals, natural extracts, and electrospinning nanotechnology offers a feasible design approach and significant technological advantages with enhanced therapeutic efficacy. Full article

Plants continuously adapt to their environments by responding to various intrinsic and extrinsic signals. They face numerous biotic and abiotic stresses such as extreme temperatures, drought, or pathogens, requiring complex regulatory mechanisms to control gene activity and adapt their proteome for survival. Epigenetic regulation plays a crucial role in these adaptations, potentially leading to both heritable and non-heritable changes across generations. This process enables plants to adjust their gene expression profiles and acclimate effectively. It is also vital for plant development and productivity, affecting growth, yield, and seed quality, and enabling plants to “remember” environmental stimuli and adapt accordingly. Key epigenetic mechanisms that play significant roles include DNA methylation, histone modification, and ubiquitin ligase complex activity. These processes, which have been extensively studied in the last two decades, have led to a better understanding of the underlying mechanisms and expanded the potential for improving agriculturally and economically important plant traits. DNA methylation is a fundamental process that regulates gene expression by altering chromatin structure. The addition of methyl groups to cytosines by DNA methylases leads to gene suppression, whereas DNA demethylases reverse this effect. Histone modifications, on the other hand, collectively referred to as the “histone code”, influence chromatin structure and gene activity by promoting either gene transcription or gene silencing. These modifications are either recognized, added, or removed by a variety of enzymes that act practically as an environmental memory, having a significant impact on plant development and the responses of plants to environmental stimuli. Finally, ubiquitin ligase complexes, which tag specific histones or regulatory proteins with ubiquitin, are also crucial in plant epigenetic regulation. These complexes are involved in protein degradation and play important roles in regulating various cellular activities. The intricate interplay between DNA methylation, histone modifications, and ubiquitin ligases adds complexity to our understanding of epigenetic regulation. These mechanisms collectively control gene expression, generating a complex and branching network of interdependent regulatory pathways. A deeper understanding of this complex network that helps plants adapt to environmental changes and stressful conditions will provide valuable insights into the regulatory mechanisms involved. This knowledge could pave the way for new biotechnological approaches and plant breeding strategies aimed at enhancing crop resilience, productivity, and sustainable agriculture. Full article

Urbanization has amplified the critical role of urban green spaces in enhancing public health and well-being. While natural landscape elements are known to influence physiological and psychological states through visual perception, their mechanistic pathways remain underexplored, and existing studies often focus on singular environments. This study examines how specific landscape elements affect public health and proposes optimization strategies for urban green space planning. Focusing on five green space types in Kunming (forests, wetlands, urban parks, street green spaces, and residential green spaces), this study employed PSPNet-based semantic segmentation to quantify landscape elements and conducted human–subject experiments using paired visual stimuli. Physiological metrics and psychological questionnaires were analysed to assess health outcomes. Key findings reveal that forests and urban parks, rich in natural elements (Plant and Earth and Mountain Elements), outperformed artificial-dominated spaces (residential/street green spaces) in physiological and psychological restoration. Artificially designed green spaces achieved benefits comparable to natural counterparts when mimicking natural element composition. Notably, aggregated indices (naturalness, artificiality, and enclosure) showed negligible correlations with health outcomes, underscoring the primacy of specific elements. The Plant and Earth and Mountain Elements mediated physiological recovery, while minimizing the Building and Artificial Element and enhancing the Sky Element exposure improved attention coherence. Excessive Water Element perception impaired heart rate stabilization, while psychological restoration mechanisms were multifaceted but were consistently linked to higher natural element proportions. These results provide actionable guidelines for optimizing visual proportions of natural elements in urban green space planning and management. Full article

Dendrocalamus latiflorus, a species of giant bamboo, holds significant ecological and economic value. This review delves into the intricate interplay between phytohormones and sugar metabolism in Dendrocalamus latiflorus, emphasizing species-specific mechanisms that enhance its ecological adaptability and rapid growth. By synthesizing recent research, this work highlights how phytohormones, including auxins, cytokinins, and abscisic acid, regulate sugar metabolism pathways such as glycolysis and starch degradation in response to environmental stimuli. These hormones influence crucial plant processes, including cell division, elongation, stress responses, and sugar metabolism pathways such as glycolysis, the tricarboxylic acid cycle, and oxidative phosphorylation. Geographic variations in these processes are examined, demonstrating their role in environmental adaptation and ecological resilience. For instance, populations in nutrient-rich soils exhibit enhanced cytokinin activity and sugar transport efficiency, while those in water-limited areas display elevated abscisic acid levels, aiding drought tolerance. This targeted focus on D. latiflorus provides novel insights into its potential applications in sustainable forestry and agroforestry systems. By integrating recent advances, this review highlights the critical role of phytohormone–sugar interplay in improving the productivity and stress resilience of D. latiflorus, with implications for agroforestry systems and climate change adaptation. Full article

Plant lectin receptor-like kinases (LecRLKs) are plant membrane protein receptor kinases. Lectin-like receptor kinases play a crucial role in regulating plant growth, development, and responses to environmental stimuli. It can rapidly respond to both biotic and abiotic stresses while mediating mechanisms of plant immune responses. This study represents the first identification of the LecRLK family genes in maize. It analyzes the gene structure, chromosomal locations, phylogenetic classification, promoter homoeotropic elements, and expression patterns under both biotic and abiotic stresses. The results indicate that these genes possess kinase and transmembrane domains, along with specific L-type or G-type extracellular domains. Most ZmLecRLK gene promoters contain cis-acting elements that are responsive to known hormones and stressors. Furthermore, these genes have been identified as being sensitive to both biotic and abiotic stresses. This discovery establishes a significant theoretical foundation for the selection of corn varieties in adverse environments. Additionally, it provides a basis for further in-depth exploration of the molecular regulatory mechanisms of LecRLK family genes. Full article

The plant hormone ethylene elicits crucial regulatory effects on plant growth, development, and stress resistance. As the enzyme that catalyzes the final step of ethylene biosynthesis, 1-Aminocyclopropane-1-carboxylic acid oxidase (ACO) plays a key role in precisely controlling ethylene production. However, the functional characterization of the ACO gene family in rice remains largely unexplored. In this study, we performed a phylogenetic analysis of seven OsACO genes (OsACO1–OsACO7), which were classified into three subfamilies (Types I, II, and III). The members within the same clades exhibited similar tertiary structures and conserved protein motifs. We conducted inter/intraspecies covariance assays of OsACOs to elucidate their evolutionary and duplication events. Numerous cis-acting elements identified in OsACO promoter regions are associated with development, hormonal stimuli, and environmental responses. The expression assay by RT-qPCR revealed that OsACO genes exhibited tissue-specific expression and were significantly altered under various abiotic stresses, indicating their potential involvement in these processes regulated at the transcriptional level. Additionally, we predicted candidate-targeting miRNAs and identified putative cysteine sites of S-nitrosylation (SNO) and S-sulfhydration (SSH) in OsACOs, providing insights into their post-transcriptional and post-translational regulatory mechanisms. These findings pave the way for the further investigation of OsACO functions and their potential applications in improving rice growth and stress resilience by modulating ethylene biosynthesis. Full article

Single-cell and spatial transcriptomics technologies have significantly advanced our understanding of the molecular mechanisms underlying crop biology. This review presents an update on the application of these technologies in crop improvement. The heterogeneity of different cell populations within a tissue plays a crucial role in the coordinated response of an organism to its environment. Single-cell transcriptomics enables the dissection of this heterogeneity, offering insights into the cell-specific transcriptomic responses of plants to various environmental stimuli. Spatial transcriptomics technologies complement single-cell approaches by preserving the spatial context of gene expression profiles, allowing for the in situ localization of transcripts. Together, single-cell and spatial transcriptomics facilitate the discovery of novel genes and gene regulatory networks that can be targeted for genetic manipulation and breeding strategies aimed at enhancing crop yield, quality, and resilience. This review highlights significant findings from recent studies, discusses the expanding roles of these technologies, and explores future opportunities for their application in crop improvement. Full article

Plants exhibit diverse pathways to regulate the timing of flowering. Some plant species require a vegetative phase before being able to perceive cold stimuli for the acceleration of flowering through vernalization. This research confirms the correlation between the vernalization process and seedling age in Welsh onions. Findings from two vernalization experiments conducted at different time intervals demonstrate that seedlings must reach a vegetative phase of at least 8 weeks to consistently respond to vernalization. Notably, 8–week–old seedlings subjected to 6 weeks of vernalization displayed the shortest time to bolting, with an average duration of 138.1 days. Transcriptome analysis led to the identification of genes homologous to those in Arabidopsis thaliana that regulate flowering. Specifically, AfisC7G05578 (CO), AfisC2G05881 (AP1), AfisC1G07745 (FT), AfisC1G06473 (RAP2.7), and AfisC2G01843 (VIM1) were identified and suggested to have potential significance in age–dependent vernalization in Welsh onions. This study not only presents a rapid vernalization method for Welsh onions but also provides a molecular foundation for understanding the interplay between seedling age and vernalization. Full article