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Search Results (1,223)

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25 pages, 3199 KB  
Article
Challenges in Aquaculture Hybrid Energy Management: Optimization Tools, New Solutions, and Comparative Evaluations
by Helena M. Ramos, Nicolas Soehlemann, Eyup Bekci, Oscar E. Coronado-Hernández, Modesto Pérez-Sánchez, Aonghus McNabola and John Gallagher
Technologies 2025, 13(10), 453; https://doi.org/10.3390/technologies13100453 - 7 Oct 2025
Viewed by 101
Abstract
A novel methodology for hybrid energy management in aquaculture is introduced, aimed at enhancing self-sufficiency and optimizing grid-related cash flows. Wind and solar energy generation are modeled using calibrated turbine performance curves and PVGIS data, respectively, with a photovoltaic capacity of 120 kWp. [...] Read more.
A novel methodology for hybrid energy management in aquaculture is introduced, aimed at enhancing self-sufficiency and optimizing grid-related cash flows. Wind and solar energy generation are modeled using calibrated turbine performance curves and PVGIS data, respectively, with a photovoltaic capacity of 120 kWp. The system also incorporates a 250 kW small hydroelectric plant and a wood drying kiln that utilizes surplus wind energy. This study conducts a comparative analysis between HY4RES, a research-oriented simulation model, and HOMER Pro, a commercially available optimization tool, across multiple hybrid energy scenarios at two aquaculture sites. For grid-connected configurations at the Primary site (base case, Scenarios 1, 2, and 6), both models demonstrate strong concordance in terms of energy balance and overall performance. In Scenario 1, a peak power demand exceeding 1000 kW is observed in both models, attributed to the biomass kiln load. Scenario 2 reveals a 3.1% improvement in self-sufficiency with the integration of photovoltaic generation, as reported by HY4RES. In the off-grid Scenario 3, HY4RES supplies an additional 96,634 kWh of annual load compared to HOMER Pro. However, HOMER Pro indicates a 3.6% higher electricity deficit, primarily due to battery energy storage system (BESS) losses. Scenario 4 yields comparable generation outputs, with HY4RES enabling 6% more wood-drying capacity through the inclusion of photovoltaic energy. Scenario 5, which features a large-scale BESS, highlights a 4.7% unmet demand in HY4RES, whereas HOMER Pro successfully meets the entire load. In Scenario 6, both models exhibit similar load profiles; however, HY4RES reports a self-sufficiency rate that is 1.3% lower than in Scenario 1. At the Secondary site, financial outcomes are closely aligned. For instance, in the base case, HY4RES projects a cash flow of 54,154 EUR, while HOMER Pro estimates 55,532 EUR. Scenario 1 presents nearly identical financial results, and Scenario 2 underscores HOMER Pro’s superior BESS modeling capabilities during periods of reduced hydroelectric output. In conclusion, HY4RES demonstrates robust performance across all scenarios. When provided with harmonized input parameters, its simulation results are consistent with those of HOMER Pro, thereby validating its reliability for hybrid energy management in aquaculture applications. Full article
(This article belongs to the Special Issue Innovative Power System Technologies)
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30 pages, 689 KB  
Article
Science Education and Environmental Identity: An Integrative Approach to Fostering Sustainability Practices in Primary School Students
by Rommel AlAli, Ali Al-Barakat, Tahani Alrosaa, Sarah Alotaibi, Ali Abdullatif and Sultan Almughyirah
Sustainability 2025, 17(19), 8883; https://doi.org/10.3390/su17198883 - 6 Oct 2025
Viewed by 161
Abstract
The research investigated how science education through integrated sustainability practices helps primary school students develop environmental identity while studying sustainability practices in their daily schoolwork. The research investigated methods to incorporate sustainability principles into regular school operations, which would lead students toward environmentally [...] Read more.
The research investigated how science education through integrated sustainability practices helps primary school students develop environmental identity while studying sustainability practices in their daily schoolwork. The research investigated methods to incorporate sustainability principles into regular school operations, which would lead students toward environmentally responsible conduct. The research used qualitative methods to achieve its goals. The research team conducted 60 sessions of semi-structured interviews and school observations in private schools located in Riyadh and Al-Ahsa regions of Saudi Arabia. The Grounded Theory method enabled researchers to generate concepts that directly stem from the collected data. The research results demonstrated that schools need to implement sustainability practices to teach students about nature-human connections and develop environmental values and sustainable practices and improve daily environmental practices and establish sustainable practices as school examples. The study demonstrated that students developed stronger environmental identity through daily school activities that incorporated sustainability education. Furthermore, students’ environmental behaviors improved through participation in activities such as waste sorting and tree planting. Based on these findings, the study recommends strengthening the role of science education in promoting sustainability through practical activities, training teachers in integrative environmental education strategies, developing curricula that emphasize sustainable practices, and involving parents in raising environmental awareness within the school community. Full article
(This article belongs to the Section Sustainable Education and Approaches)
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24 pages, 2871 KB  
Review
Advances in Plant Species Recognition Mediated by Root Exudates: A Review
by Fumin Meng, Renyan Duan, Hui Yang, Qian Dai, Yu Zhang and Jiaman Fu
Plants 2025, 14(19), 3076; https://doi.org/10.3390/plants14193076 - 4 Oct 2025
Viewed by 508
Abstract
Root exudates are critical signaling molecules in belowground plant–plant interactions, regulating physiological and ecological responses in adjacent plants through kinship recognition and self-/non-self-discrimination systems. This review systematically synthesizes the compositional diversity of root exudates, with particular emphasis on elucidating the ecological foundations of [...] Read more.
Root exudates are critical signaling molecules in belowground plant–plant interactions, regulating physiological and ecological responses in adjacent plants through kinship recognition and self-/non-self-discrimination systems. This review systematically synthesizes the compositional diversity of root exudates, with particular emphasis on elucidating the ecological foundations of plant recognition modalities (kin recognition, allelopathy, plant self-/non-self-identification, and growth regulation). The analyses demonstrate that exudate composition is dynamically modulated by plant species identity, rhizosphere microbial communities, and environmental stressors, with signaling functions mediated through both physical signal transduction and chemical signal decoding. This chemical communication system not only drives species-specific interaction strategies but redefines the theoretical frameworks of plant community assembly by establishing causal linkages between molecular signaling events and ecological outcomes. Full article
(This article belongs to the Section Plant Protection and Biotic Interactions)
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34 pages, 40949 KB  
Article
New Insight and Confrontation of the Internal Structure and Sensilla of the Mouthparts of Cicadomorpha (Insecta: Hemiptera)
by Jolanta Brożek, Piotr Wegierek, Mick Webb and Adam Stroiński
Insects 2025, 16(10), 1026; https://doi.org/10.3390/insects16101026 - 4 Oct 2025
Viewed by 229
Abstract
This study presents detailed microstructural observations of the mouthparts and sensory organs of adult cicadomorphan species, obtained using scanning electron microscopy (SEM). Despite microstructural variation, the overall morphology of the mouthparts, comprising a three-segmented labium and a bundle of interlocking stylets (maxillae and [...] Read more.
This study presents detailed microstructural observations of the mouthparts and sensory organs of adult cicadomorphan species, obtained using scanning electron microscopy (SEM). Despite microstructural variation, the overall morphology of the mouthparts, comprising a three-segmented labium and a bundle of interlocking stylets (maxillae and mandibles), is highly conserved across species, supporting its evolutionary significance in sap feeding from floem, xylem, or epidermis cells. Variations in the number and shape of mandibular stylet barbs likely reflect adaptations to different host plant tissues. The presence of an identical dual interlocking system between the maxillary stylets, which is found consistently across taxa, enhances functional stability during feeding and indicates a conserved mechanism among cicadomorphans. The species studied exhibit two distinct types of salivary canal closure: hooked and T-shaped. The latter potentially represents a state linked to specialised feeding strategies, such as sap xylem feeding. On the labial tip, there are different shapes of the anterior sensory fields. This area hosts a complex array of sensilla of different numbers, including gustatory (sensilla peg, PS1 and PS2, basiconica, BS3, double basiconica, DB), olfactory (finger–like, FLS) and thermo-hygroreceptive (sensillum dome-shaped, DS, and coeloconicum, CS) types, which facilitate host detection and feeding site selection. In the posterior sensory field, sensilla contact-chemosensory (sensilla basiconica, BS1 and BS2, and sensillum trichoideum, TS) are present. Mechanosensilla chaetica (CH1–CH3) are widely distributed on the last labial segment and may contribute to labium positioning. These findings emphasise the presence of both conserved and specialised morphological traits reflecting evolutionary and ecological diversification within Cicadomorpha. Full article
(This article belongs to the Section Insect Systematics, Phylogeny and Evolution)
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21 pages, 7859 KB  
Article
Arabinogalactan Proteins Mark the Generative Cell–Vegetative Cell Interface in Monocotyledonous Pollen Grains
by Małgorzata Kapusta, Magdalena Narajczyk and Bartosz J. Płachno
Cells 2025, 14(19), 1549; https://doi.org/10.3390/cells14191549 - 3 Oct 2025
Viewed by 350
Abstract
Arabinogalactan proteins (AGPs: hydroxyproline-rich glycoproteins) are ubiquitous in plants and play various functions in cases of development and reproduction. In Arabidopsis thaliana some AGPs can work as markers for gametophytic cell differentiation (among others embryological structures they mark generative cell wall and/or plasma [...] Read more.
Arabinogalactan proteins (AGPs: hydroxyproline-rich glycoproteins) are ubiquitous in plants and play various functions in cases of development and reproduction. In Arabidopsis thaliana some AGPs can work as markers for gametophytic cell differentiation (among others embryological structures they mark generative cell wall and/or plasma membrane, and also sperm cells). However, apart from Arabidopsis, this labeling of generative cell and sperm cells in pollen grains has only been observed in a few flowering plant species belonging to dicotyledons. No such studies are available in monocotyledons. The main aim of our study was to see whether AGPs would be present at the generative cell–vegetative cell interface in different monocotyledons (representatives of Asparagaceae, Amarylidaceae and Liliaceae), and we also wanted to test whether they would be the same AGPs as in dicotyledons. For the study, we selected Gagea lutea (L.) Ker Gawl., Ornithogalum nutans L. and Galanthus nivalis L. species that differ in shape and size of generative cells. Antibodies against arabinogalactan proteins AGPs were used, including JIM8, JIM13, JIM14, MAC207, LM2, LM14, JIM15 and JIM4. The localization of the examined compounds was determined using immunohistochemistry techniques. The key finding was that AGPs (detected with JIM8 and JIM13 antibodies) consistently mark the boundary between the generative cell and the surrounding vegetative cytoplasm, suggesting their association with the generative cell–vegetative cell interface in all species studied. Identifying such molecular markers in male gametophyte may enhance the understanding of gametophytic cell fate, sperm cell identity and the molecular mechanisms underlying fertilization. Such labeling may also be useful in studies on pollen development, species comparisons, or responses to environmental stresses. Full article
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26 pages, 3861 KB  
Article
Metagenomics Study of the Commercial Tomato Virome Focused on Virus Species of Epidemiological Interest
by Zafeiro Zisi, Isabel Ruiz Movilla, Nikolas Basler, Lila Close, Lucas Ghijselings, Robby Van der Hoeven, Maria Ioanna Papadaki, Ester Rabbinowitsch, Fiona Van Reeth, Jill Swinnen, Elise Vogel, Christine Vos, Inge Hanssen and Jelle Matthijnssens
Viruses 2025, 17(10), 1334; https://doi.org/10.3390/v17101334 - 30 Sep 2025
Viewed by 406
Abstract
Plant viruses have detrimental effects on commercial tomato cultivation leading to severe economic consequences. Viral metagenomics studies provide the opportunity to examine in depth the virome composition of a sample set without any pre-existing knowledge of the viral species that are present. In [...] Read more.
Plant viruses have detrimental effects on commercial tomato cultivation leading to severe economic consequences. Viral metagenomics studies provide the opportunity to examine in depth the virome composition of a sample set without any pre-existing knowledge of the viral species that are present. In the present study, 101 plant samples were collected from commercial greenhouses in 13 countries in Europe, Africa, Asia, and North America between 2017 and 2024. All samples were processed with the VLP enrichment protocol NetoVIR and the obtained data were analyzed with the ViPER pipeline. Forty-three eukaryotic viral species were identified, with a median identification of 2 species per sample. The most prevalent viral species were pepino mosaic virus (PepMV), tomato brown rugose fruit virus (ToBRFV), and southern tomato virus (STV). The obtained genome sequences were used to study the diversity and phylogeny of these viruses. The three genotypes identified for PepMV showed low diversity within each genotype (96.2–99.0% nucleotide identity). Low isolate diversity was also found for ToBRFV and STV. No significant association could be found between STV identification and the presence of symptoms, questioning the pathogenic potential of STV. Three other pathogenic viral species of particular interest due to their effects on tomato cultivation or recent emergence, namely tomato torrado virus (ToTV), tomato fruit blotch virus (ToFBV), and cucumber mosaic virus (CMV), were part of the virome with low prevalence. Our study provided a comprehensive overview of the analyzed samples’ virome, as well as the possibility to inspect the genetic diversity of the identified viral genomes and to look into their potential role in symptom development. Full article
(This article belongs to the Special Issue Advances in Plant Virus/Viroid Detection and Identification Methods)
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19 pages, 5313 KB  
Article
Gibberellin Disrupts Hormonal Homeostasis and Anther Integrity to Trigger Sex Reversal in Spinach
by Tengqi Wang, Ehsan Khalid, Haoming Mao, Yihan Tong, Xinyu Xue, Yuru Tang, Lingmin Cai and Ray Ming
Int. J. Mol. Sci. 2025, 26(19), 9505; https://doi.org/10.3390/ijms26199505 - 28 Sep 2025
Viewed by 226
Abstract
Spinach is a dioecious vegetable and an excellent model for investigating plant sex differentiation. Exogenous gibberellin treatment induced sepal hypoplasia and sex reversal, converting 42% of stamens into pistils in male plants. Transcriptome analysis identified 112 male-biased genes enriched in stamen and pollen [...] Read more.
Spinach is a dioecious vegetable and an excellent model for investigating plant sex differentiation. Exogenous gibberellin treatment induced sepal hypoplasia and sex reversal, converting 42% of stamens into pistils in male plants. Transcriptome analysis identified 112 male-biased genes enriched in stamen and pollen development, while hormone profiling revealed coordinated changes in GA, cytokinins, auxin, jasmonic acid, and abscisic acid. Functional assays demonstrated that silencing SpAMS or SpPGIP caused extensive carpelization, and in situ hybridization localized their expression to developing anthers. Dual-luciferase assays confirmed that SpAMS directly activates the B-class gene SpPI, and genomic mapping placed SpAMS in the pseudo-autosomal region of the Y chromosome. These results indicate that GA disrupts hormonal homeostasis and anther wall integrity, while the SpAMS–SpPI pathway regulates tapetal development to maintain male identity. Our findings identify SpAMS as a key male-promoting factor in spinach and provide a framework for elucidating sex determination mechanisms in dioecious plants. Full article
(This article belongs to the Section Molecular Plant Sciences)
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17 pages, 6077 KB  
Article
Identification of Chalcone Synthase Genes and Their Responses to Salt and Cold Stress in Poncirus trifoliata
by Lijuan Jiang, Yu Sheng, Chengyang Song, Teng Liu, Shuangyu Sheng and Xiaoyong Xu
Plants 2025, 14(19), 3003; https://doi.org/10.3390/plants14193003 - 28 Sep 2025
Viewed by 272
Abstract
Chalcone Synthase (CHS) plays a vital role in flavonoid synthesis, influencing plant growth, development, and responses to both biotic and abiotic stress. In this study, 11 CHS genes were identified in Poncirus trifoliata using bioinformatics methods, with their distribution across five chromosomes and [...] Read more.
Chalcone Synthase (CHS) plays a vital role in flavonoid synthesis, influencing plant growth, development, and responses to both biotic and abiotic stress. In this study, 11 CHS genes were identified in Poncirus trifoliata using bioinformatics methods, with their distribution across five chromosomes and unassigned contigs. Each gene contains 2–3 exons and 3–8 conserved motifs. In silico prediction suggested that the PtrCHS proteins are localized in the cytoplasm. PtrCHS9 and PtrCHS11 share identical protein tertiary structures. Phylogenetic analysis classified the CHS family members into four subgroups. Synteny analysis revealed one set of collinear gene pairs within Poncirus trifoliata. Between Poncirus trifoliata and Arabidopsis thaliana, two sets of collinear gene pairs were identified, while one such set was found between Poncirus trifoliata and Oryza sativa. Promoter element analysis showed the presence of various hormone response and stress response elements within PtrCHS promoters. RNA-Seq data demonstrated tissue-specific expression patterns of PtrCHSs. RT-qPCR results indicated that all CHS genes, except PtrCHS11, respond to salt stress with dynamic, member-specific patterns. Additionally, four PtrCHSs (PtrCHS3, PtrCHS5, PtrCHS7, and PtrCHS10) were significantly upregulated in response to cold treatment. Notably, PtrCHS7 and PtrCHS10 maintained high expression levels at both 6 and 12 h, implying they may be key players in cold stress response in Poncirus trifoliata. Clones of PtrCHS7 and PtrCHS10 were obtained, and overexpression vectors were constructed in preparation for gene transformation. Overall, this study provides a solid foundation for future research into the functions of the PtrCHSs. Full article
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14 pages, 3137 KB  
Article
Characterization and Phylogenetic Analysis of MADS-Box Gene Family in Magnoliids: Insights into the Evolution of Floral Morphogenesis in Angiosperms
by Haowei Chen, Haoyue Qu, Junmei Zhou, Junjie Pan, Zhoutao Wang, Liangsheng Zhang, Xiuxiu Li and Kejun Cheng
Plants 2025, 14(19), 2991; https://doi.org/10.3390/plants14192991 - 27 Sep 2025
Viewed by 309
Abstract
Magnoliids represent one of the most basal lineages within angiosperms, and their ancestral floral morphology provides crucial insights into the evolution of flowers in angiosperms. MCM1-AGAMOUS-DEFICIENS-SRF (MADS)-box transcription factors play crucial roles in specifying floral organs. To understand their evolutionary history and functional [...] Read more.
Magnoliids represent one of the most basal lineages within angiosperms, and their ancestral floral morphology provides crucial insights into the evolution of flowers in angiosperms. MCM1-AGAMOUS-DEFICIENS-SRF (MADS)-box transcription factors play crucial roles in specifying floral organs. To understand their evolutionary history and functional divergence in magnoliids, we identified MADS-box genes, and conducted phylogenetic and expression analysis in 33 magnoliids and 8 other angiosperm plants. A total of 1310 MADS-box genes were identified and classified into Type I and Type II. The expansion of MADS-box genes in magnoliids mainly arose from whole-genome duplication events. In Liriodendron chinensis and Chimonanthus praecox, we identified floral homeotic MADS-box genes that are orthologous to the ABCDE model genes of floral organ identity determination. The broad expression pattern of A and B genes in floral organs and overlapping activity of ABCDE-model genes are consistent with the “shifting−fading borders” scheme proposed in basally diverging angiosperm lineages. Our results not only elucidate the driving forces underlying the diversification of MADS-box genes in magnoliids, but also shed light on the evolutionary models of floral development in angiosperms. Full article
(This article belongs to the Special Issue Angiosperm Diversification and Phylogenetic Relationships)
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22 pages, 3172 KB  
Article
Synergistic Biocontrol of Agrobacterium tumefaciens by Phage PAT1 and Ascaphin-8: Enhanced Antimicrobial Activity and Virulence Attenuation via HupB Loss
by Miloud Sabri, Kaoutar El Handi, Cosima Damiana Calvano, Mariachiara Bianco, Angelo De Stradis and Toufic Elbeaino
Int. J. Mol. Sci. 2025, 26(19), 9355; https://doi.org/10.3390/ijms26199355 - 25 Sep 2025
Viewed by 217
Abstract
Agrobacterium tumefaciens (A. tumefaciens), the causal agent of crown gall disease on several plant species, is responsible for substantial yield losses worldwide. The limitations of conventional pesticides in controlling this disease highlight the need for alternative antibacterial solutions. Phage biocontrol can [...] Read more.
Agrobacterium tumefaciens (A. tumefaciens), the causal agent of crown gall disease on several plant species, is responsible for substantial yield losses worldwide. The limitations of conventional pesticides in controlling this disease highlight the need for alternative antibacterial solutions. Phage biocontrol can be an option, effectively managing bacterial plant diseases, by reducing pathogen loads while driving evolutionary trade-offs, often enhancing synergy with other antibacterial strategies. In this study, we aimed to explore and develop a sustainable strategy to control A. tumefaciens, by combining Agrobacterium phage PAT1 with the natural antimicrobial peptide “Ascaphin 8” and leveraging the fitness trade-offs resulting from phage resistance. In vitro and in planta investigations showed that PAT1 in combination with Ascaphin 8 at the sublethal concentration of 3 μM could effectively eradicate A. tumefaciens in YPG broth and reduce tumor formation by 46.33% on tomato plants, unlike their individual applications, indicating that the combination was synergistic against A. tumefaciens. This synergy was attributed to the fitness trade-offs in A. tumefaciens induced by phage resistance, which led to increased sensitivity to antimicrobial peptides, slower growth rate, and an 89.96% attenuation of virulence in the PAT1-resistant mutant (AT-M1). Transmission electron microscopy analyses showed that treatment with 1 µM of Ascaphin 8 induced cytoplasmic condensation in 80% of AT-M1 cells, whereas only 16% of the wild-type CFBP 5770 cells exhibited similar alterations under identical conditions. Furthermore, proteomic analyses performed on AT-M1 and CFBP 5770 revealed that the mutant AT-M1 exhibited a loss of DNA-binding protein HupB and downregulation of SDR family oxidoreductase and superoxide dismutase. These molecular alterations are potentially associated with the reduced virulence and heightened AT-M1 sensitivity. This study investigated the fitness costs associated with phage resistance in A. tumefaciens and laid the first foundation for potential biocontrol of plant bacterial diseases, particularly A. tumefaciens infections, using phage–peptide combination. Full article
(This article belongs to the Special Issue Molecular Mechanisms of Plant Virus Infection, Resistance and Control)
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11 pages, 5737 KB  
Article
Coinfection of Gynura bicolor with a New Strain of Vanilla Distortion Mosaic Virus and a Novel Maculavirus in China
by Zhengnan Li, Mengze Guo, Pingping Sun and Lei Zhang
Viruses 2025, 17(10), 1290; https://doi.org/10.3390/v17101290 - 24 Sep 2025
Viewed by 292
Abstract
In recent years, symptoms suggestive of viral infection have commonly occurred in Gynura bicolor in China. However, no viral genome infecting G. bicolor has been reported. This study applied high-throughput sequencing to plant samples with chlorotic spots in Sanya, Hainan. Viral sequences were [...] Read more.
In recent years, symptoms suggestive of viral infection have commonly occurred in Gynura bicolor in China. However, no viral genome infecting G. bicolor has been reported. This study applied high-throughput sequencing to plant samples with chlorotic spots in Sanya, Hainan. Viral sequences were confirmed using RT-PCR and RACE. Complete genomes of vanilla distortion mosaic virus (VDMV, Potyvirus vanillae) and an unknown virus were obtained. Sequence analysis indicated that the VDMV isolate from the G. bicolor is a novel variant. It shares 81.13% identity with its closest known strain. The unknown virus is phylogenetically related to maculaviruses but shares less than 76% nucleotide identity with other tymovirids. According to the ICTV, it should be classified as a new member of the genus Maculavirus. In this study, we provisionally designated the virus as gynura bicolor maculavirus (GBMV). Transmission electron microscopy revealed both filamentous and icosahedral virions in stems, but only filamentous virions in leaves. Quantitative RT-PCR showed high RNA accumulation of both viruses in the stems. GBMV levels were significantly lower in leaves. Dodder-mediated mechanical transmission successfully transferred VDMV and GBMV to Nicotiana occidentalis, Oenothera biennis, and Chenopodium amaranticolor. O. biennis developed chlorotic symptoms 15 days after dual infection. Full article
(This article belongs to the Section Viruses of Plants, Fungi and Protozoa)
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22 pages, 3795 KB  
Article
Comparative Analysis of the Chloroplast Genomes of Grewia tembensis Fresen and Closely Related Species of Grewioideae Hochr: A Phylogenetic and Conservation Perspective
by Widad S. AL-Juhani
Genes 2025, 16(10), 1124; https://doi.org/10.3390/genes16101124 - 23 Sep 2025
Viewed by 363
Abstract
Background: Grewia is a genus of flowering plants belonging to the Malvaceae family. Grewia tembensis is used in traditional medicine for the treatment of several microbial diseases as well as a livestock feed. Methods: In the current study, the complete chloroplast (cp) genome [...] Read more.
Background: Grewia is a genus of flowering plants belonging to the Malvaceae family. Grewia tembensis is used in traditional medicine for the treatment of several microbial diseases as well as a livestock feed. Methods: In the current study, the complete chloroplast (cp) genome of G. tembensis was constructed using data derived from high-throughput sequencing, followed by comprehensive analyses and comparison with phylogenetically related species. Results: The chloroplast genome of G. tembensis is 158,040 bp long and has the typical quadripartite structure found in angiosperms. The large single-copy (LSC) segment measures 86,956 bp, whereas the small single-copy (SSC) regions encompass 20,142 bp. The two inverted repeat (IRa and IRb) regions have an identical length of 25,471 bp and display a higher degree of conservation relative to the single-copy (SC) regions based on nucleotide diversity analysis. The genome of G. tembensis possesses 130 genes. The simple sequence repeat (SSR) numbers ranged between 202 and 234 repeats in Grewioideae subfamily species under this study. Furthermore, nucleotide diversity analysis demonstrated a marked elevation in polymorphism information (Pi) values across 30 genes in Grewioideae. Conclusions: cpSSRs can be used for the examination of population genetic variability within and between Grewia species, as well as the categorization of populations and their biogeographical distribution. In addition, loci with high Pi values can contribute substantial genetic variability, which is crucial for addressing taxonomic dilemmas in phylogenetic investigations. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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16 pages, 1999 KB  
Article
Molecular Identification, Pathogenicity, and Fungicide Sensitivity of Sclerotinia spp. Isolates Associated with Sclerotinia Stem Rot in Rapeseed in Germany
by Nazanin Zamani-Noor, Dorsa Daneshbakhsh and Beatrice Berger
Agriculture 2025, 15(19), 1994; https://doi.org/10.3390/agriculture15191994 - 23 Sep 2025
Viewed by 257
Abstract
(1) Background: Sclerotinia sclerotiorum is the main causal agent of Sclerotinia stem rot in rapeseed, while the related species S. subarctica has also been reported. However, its prevalence and impact in Germany remain unclear. Understanding the pathogenicity and fungicide sensitivity of Sclerotinia spp. [...] Read more.
(1) Background: Sclerotinia sclerotiorum is the main causal agent of Sclerotinia stem rot in rapeseed, while the related species S. subarctica has also been reported. However, its prevalence and impact in Germany remain unclear. Understanding the pathogenicity and fungicide sensitivity of Sclerotinia spp. is important for effective and sustainable disease management. (2) Methods: Isolates were collected from symptomatic rapeseed plants across Germany. Molecular identification was performed via ITS rRNA sequencing. Pathogenicity was assessed by stem inoculation of five rapeseed cultivars at the flowering stage. Fungicide sensitivity was tested in vitro against seven active substances, including azoles, boscalid, azoxystrobin, and fludioxonil. (3) Results: All isolates were identified as S. sclerotiorum; S. subarctica was not detected. Of the tested isolates, 23 showed low aggressiveness (relative lesion length < 15% of total plant length), 29 were moderately aggressive (15–20%), and 10 were highly aggressive (>20%). Azole fungicides were highly effective (EC50 < 1.6 μg a.s. mL−1), while reduced sensitivity was observed for boscalid, azoxystrobin, and fludioxonil (EC50 > 4.0). (4) Conclusions: This study provides insight into the molecular identity, pathogenicity, and fungicide sensitivity of Sclerotinia isolates. The observed variability in aggressiveness and mycelial growth to fungicide emphasize the need for integrated management strategies to ensure Sclerotinia stem rot control. Full article
(This article belongs to the Section Crop Protection, Diseases, Pests and Weeds)
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7 pages, 1800 KB  
Communication
Isolation and Characterization of Globisporangium glomeratum (syn. Pythium glomeratum) from Declining Holm Oak in a Historical Garden
by Anna Maria Vettraino, Michele Narduzzi and Chiara Antonelli
Pathogens 2025, 14(10), 960; https://doi.org/10.3390/pathogens14100960 - 23 Sep 2025
Viewed by 359
Abstract
Pythium-like organism species are widespread soilborne oomycetes known to cause root diseases in a wide range of plant hosts. However, their involvement in the decline of woody species in historical and urban gardens has received limited attention. This study reports the isolation [...] Read more.
Pythium-like organism species are widespread soilborne oomycetes known to cause root diseases in a wide range of plant hosts. However, their involvement in the decline of woody species in historical and urban gardens has received limited attention. This study reports the isolation and identification of a Pythium-like organism from declining Quercus ilex specimens in a historical garden, where affected trees showed symptoms of root rot and sucker dieback. Integration of morphological observations and molecular analyses of ITS, LSU, and Cox II sequences confirmed the identity of the isolates as Globisporangium glomeratum (formerly Pythium glomeratum). Pathogenicity tests confirmed the aggressiveness of these isolates on Q. ilex seedlings, resulting in significant reductions in plant height and shoot and root biomass. The detection of G. glomeratum in the soil of a historical garden underscores the risk of its unintentional dissemination through nursery stock or soil movement, particularly in urban settings where plant replacement is frequent. This is the first report of G. glomeratum as a pathogen of Q. ilex, emphasizing the importance of phytosanitary monitoring in culturally and ecologically valuable green spaces. Full article
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17 pages, 3876 KB  
Article
Rootstock Genotype Dictates Phosphorus Deficiency Tolerance and Transcriptional Plasticity in Grafted Camellia oleifera Plants
by Zhihua Ren, Juan Liu, Jin Zeng, Li Cheng, Huiyun Liu, Yunyu Zhang, Qinhua Cheng, Wenjuan Su, Huaiyuan Wu and Dongnan Hu
Life 2025, 15(9), 1489; https://doi.org/10.3390/life15091489 - 22 Sep 2025
Viewed by 252
Abstract
Rootstock choice offers a powerful lever for tailoring economically important trees to adverse environments. Camellia oleifera Abel., a premier oil-producing species cultivated widely on red-soil hills, suffers large yield losses under chronic phosphorus deficiency. We grafted a single elite scion (CL4) onto three [...] Read more.
Rootstock choice offers a powerful lever for tailoring economically important trees to adverse environments. Camellia oleifera Abel., a premier oil-producing species cultivated widely on red-soil hills, suffers large yield losses under chronic phosphorus deficiency. We grafted a single elite scion (CL4) onto three contrasting rootstocks (CL4, CL3, CL53) and monitored growth and root transcriptomes for 1.5 years under adequate (1 mM) or limiting (0 mM) P supply. Under low-P stress, the rootstock identity reshaped the root architecture: CL4/CL3 produced the longest, most extensive network, increasing the total root length by 49.7%, the surface area by 52.9%, and the volume by 42.6% relative to the control, whereas leaf morphology responded solely to P supply, not to the graft combination. CL4/CL3 also accumulated up to more than 17.5% of root biomass and 28.25% of whole-plant biomass than any other combination. Physiologically, CL4/CL3 acted as an aggressive P miner, accumulating 67.8% more P in its roots than the self-grafted control under P limitation, while CL4/CL4 maximized the internal P use efficiency, showing a 44.74% higher root P use efficiency than CL4/CL53—two contrasting yet effective strategies for coping with low-P stress. Transcriptome profiling uncovered 1733 DEGs in the CL4/CL3 and 2585 in the CL4/CL4 roots, with 150 and 255 uniquely co-expressed genes, respectively. CL4/CL3 up-regulated organic-acid and phenylpropanoid pathways; CL4/CL4 activated defense and phosphate transport networks. qRT-PCR of six genes confirmed that CL4/CL3 mounted a stronger low-P response via MAPK, hormonal, and lipid–metabolic signaling. These results provide a mechanistic framework for rootstock-mediated P efficiency and establish a foundation for the molecular breeding of C. oleifera under nutrient-limited conditions. Full article
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